Guide to the Human Genome
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Name: TMEM170A Sequence: fasta or formatted (144aa) NCBI GI: 21687072
Description:

transmembrane protein 170A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         12           2
 C cysteine            2.1          3           1
 D aspartate           0.0          0           0
 E glutamate           3.5          5           1
 F phenylalanine       6.2          9           2
 G glycine            12.5         18           2
 H histidine           2.1          3           2
 I isoleucine          5.6          8           1
 K lysine              2.1          3           1
 L leucine            15.3         22           2
 M methionine          3.5          5           1
 N asparagine          1.4          2           1
 P proline             4.2          6           1
 Q glutamine           2.1          3           2
 R arginine            4.2          6           1
 S serine              9.0         13           2
 T threonine           6.2          9           1
 V valine              8.3         12           2
 W tryptophan          1.4          2           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 170A 
TMEM170B              0.352   transmembrane protein 170B 
TLCD2                 0.023   PREDICTED: TLC domain containing 2 
TLCD2                 0.023   PREDICTED: hypothetical protein 
TLCD2                 0.023   PREDICTED: TLC domain containing 2 
ADCY6                 0.019   adenylate cyclase 6 isoform a 
NR6A1                 0.011   nuclear receptor subfamily 6, group A, member 1 isof...
NR6A1                 0.011   nuclear receptor subfamily 6, group A, member 1 isof...
HTR5A                 0.008   5-hydroxytryptamine receptor 5A 
NMUR2                 0.008   neuromedin U receptor 2 
PKHD1                 0.008   fibrocystin isoform 2 
PKHD1                 0.008   fibrocystin isoform 1 
C9orf150              0.008   hypothetical protein LOC286343 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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