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Search of human proteins with 239745578
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745578 PREDICTED: hypothetical protein XP_002344151 [Homo
sapiens]
(81 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756597 PREDICTED: hypothetical protein [Homo sapiens] 168 1e-42
gi|239751089 PREDICTED: hypothetical protein XP_002347701 [Homo ... 168 1e-42
gi|239745578 PREDICTED: hypothetical protein XP_002344151 [Homo ... 168 1e-42
gi|134053883 intestinal facilitative glucose transporter 7 [Homo... 30 0.32
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 27 3.5
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 27 3.5
gi|35493853 otoferlin isoform c [Homo sapiens] 27 4.6
gi|35493868 otoferlin isoform b [Homo sapiens] 27 4.6
gi|35493860 otoferlin isoform d [Homo sapiens] 27 4.6
gi|34740331 otoferlin isoform a [Homo sapiens] 27 4.6
gi|210147475 zinc finger protein 92 homolog [Homo sapiens] 27 4.6
gi|19923437 adenylate kinase 3 [Homo sapiens] 26 6.0
gi|240255430 hypothetical protein LOC100289135 [Homo sapiens] 26 7.8
gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens] 26 7.8
gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo ... 26 7.8
>gi|239756597 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 168 bits (425), Expect = 1e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60
MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL
Sbjct: 169 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 228
Query: 61 ERAQGCGVVVCCEAHWAYGVA 81
ERAQGCGVVVCCEAHWAYGVA
Sbjct: 229 ERAQGCGVVVCCEAHWAYGVA 249
>gi|239751089 PREDICTED: hypothetical protein XP_002347701 [Homo
sapiens]
Length = 81
Score = 168 bits (425), Expect = 1e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60
MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL
Sbjct: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60
Query: 61 ERAQGCGVVVCCEAHWAYGVA 81
ERAQGCGVVVCCEAHWAYGVA
Sbjct: 61 ERAQGCGVVVCCEAHWAYGVA 81
>gi|239745578 PREDICTED: hypothetical protein XP_002344151 [Homo
sapiens]
Length = 81
Score = 168 bits (425), Expect = 1e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60
MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL
Sbjct: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60
Query: 61 ERAQGCGVVVCCEAHWAYGVA 81
ERAQGCGVVVCCEAHWAYGVA
Sbjct: 61 ERAQGCGVVVCCEAHWAYGVA 81
>gi|134053883 intestinal facilitative glucose transporter 7 [Homo
sapiens]
Length = 512
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 6 ELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL 46
ELE + A+ARA RAEG H +HL R+ R QLL
Sbjct: 252 ELEDMRAEARAERAEG-------HLSVLHLCALRSLRWQLL 285
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/65 (29%), Positives = 25/65 (38%)
Query: 8 EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCG 67
EG+G +A G E HL + AR +L Q Q+ R G + G G
Sbjct: 352 EGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRG 411
Query: 68 VVVCC 72
V C
Sbjct: 412 VCGKC 416
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/65 (29%), Positives = 25/65 (38%)
Query: 8 EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCG 67
EG+G +A G E HL + AR +L Q Q+ R G + G G
Sbjct: 352 EGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRG 411
Query: 68 VVVCC 72
V C
Sbjct: 412 VCGKC 416
>gi|35493853 otoferlin isoform c [Homo sapiens]
Length = 1307
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 5 RELEGIGAQARAVRAEGVQHRV 26
RELE +G QAR +RA+ +H V
Sbjct: 110 RELENMGQQARMLRAQVKRHTV 131
>gi|35493868 otoferlin isoform b [Homo sapiens]
Length = 1230
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 5 RELEGIGAQARAVRAEGVQHRV 26
RELE +G QAR +RA+ +H V
Sbjct: 53 RELENMGQQARMLRAQVKRHTV 74
>gi|35493860 otoferlin isoform d [Homo sapiens]
Length = 1230
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 5 RELEGIGAQARAVRAEGVQHRV 26
RELE +G QAR +RA+ +H V
Sbjct: 53 RELENMGQQARMLRAQVKRHTV 74
>gi|34740331 otoferlin isoform a [Homo sapiens]
Length = 1997
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 5 RELEGIGAQARAVRAEGVQHRV 26
RELE +G QAR +RA+ +H V
Sbjct: 800 RELENMGQQARMLRAQVKRHTV 821
>gi|210147475 zinc finger protein 92 homolog [Homo sapiens]
Length = 416
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 37 QGRAARRQLLQRGVQ-LGRSGCAHLERAQGCGVVVCCE 73
+G+AAR +LQRG Q LG+S A + +G C+
Sbjct: 118 EGQAARSSVLQRGAQGLGQSSAAGPQGPKGAEKRYLCQ 155
>gi|19923437 adenylate kinase 3 [Homo sapiens]
Length = 227
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 10 IGAQARAVRAE----------GVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAH 59
+GA AR +RA V R+ H E HL+ G R +L RG ++G A
Sbjct: 1 MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML-RGTEIGVLAKAF 59
Query: 60 LERAQ 64
+++ +
Sbjct: 60 IDQGK 64
>gi|240255430 hypothetical protein LOC100289135 [Homo sapiens]
Length = 215
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 14 ARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLER 62
A+ RA + H A+ L GR R + RG+ + R+ C HL+R
Sbjct: 58 AQTCRATWASGDLDHGADAGELRLGRQRTRGRV-RGLSVQRARCRHLQR 105
>gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens]
Length = 229
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 14 ARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLER 62
A+ RA + H A+ L GR R + RG+ + R+ C HL+R
Sbjct: 72 AQTCRATWASGDLDHGADAGELRLGRQRTRGRV-RGLSVQRARCRHLQR 119
>gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo
sapiens]
Length = 229
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 14 ARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLER 62
A+ RA + H A+ L GR R + RG+ + R+ C HL+R
Sbjct: 72 AQTCRATWASGDLDHGADAGELRLGRQRTRGRV-RGLSVQRARCRHLQR 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,733,327
Number of Sequences: 37866
Number of extensions: 87627
Number of successful extensions: 372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 15
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.