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Search of human proteins with 239745442
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756499 PREDICTED: hypothetical protein [Homo sapiens] 229 3e-61
gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo ... 229 3e-61
gi|239755308 PREDICTED: hypothetical protein [Homo sapiens] 60 3e-10
gi|239749801 PREDICTED: hypothetical protein [Homo sapiens] 60 3e-10
gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo ... 60 3e-10
gi|239753906 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-08
gi|239748450 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-08
gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo ... 54 2e-08
gi|239753701 PREDICTED: hypothetical protein [Homo sapiens] 49 9e-07
gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo ... 49 9e-07
gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo ... 49 9e-07
gi|38524614 zinc finger protein 773 [Homo sapiens] 27 2.7
gi|209693426 Sma- and Mad-related protein 2 isoform 2 [Homo sapi... 27 4.6
gi|5174513 mothers against decapentaplegic homolog 3 isoform 1 [... 26 6.0
gi|149944540 zinc finger protein 506 isoform 1 [Homo sapiens] 26 7.8
gi|224028219 zinc finger protein 506 isoform 2 [Homo sapiens] 26 7.8
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 26 7.8
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap... 26 7.8
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap... 26 7.8
gi|118600985 zinc finger protein 91 [Homo sapiens] 26 7.8
gi|16933557 dachsous 1 precursor [Homo sapiens] 26 7.8
>gi|239756499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 229 bits (585), Expect = 3e-61
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQN 60
MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQN
Sbjct: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQN 60
Query: 61 RKELPSTAYCRGWLVWPAFIPLFGPTHILLIGPFYRVLIGLFYRVLIGPF 110
RKELPSTAYCRGWLVWPAFIPLFGPTHILLIGPFYRVLIGLFYRVLIGPF
Sbjct: 61 RKELPSTAYCRGWLVWPAFIPLFGPTHILLIGPFYRVLIGLFYRVLIGPF 110
>gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo
sapiens]
Length = 110
Score = 229 bits (585), Expect = 3e-61
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQN 60
MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQN
Sbjct: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQN 60
Query: 61 RKELPSTAYCRGWLVWPAFIPLFGPTHILLIGPFYRVLIGLFYRVLIGPF 110
RKELPSTAYCRGWLVWPAFIPLFGPTHILLIGPFYRVLIGLFYRVLIGPF
Sbjct: 61 RKELPSTAYCRGWLVWPAFIPLFGPTHILLIGPFYRVLIGLFYRVLIGPF 110
>gi|239755308 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 60.5 bits (145), Expect = 3e-10
Identities = 32/58 (55%), Positives = 38/58 (65%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLS 58
MV P FVP DV+ EFLPSG F+VSLTSR KLQ F+ SVTAHK +++S
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVS 58
>gi|239749801 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 60.5 bits (145), Expect = 3e-10
Identities = 32/58 (55%), Positives = 38/58 (65%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLS 58
MV P FVP DV+ EFLPSG F+VSLTSR KLQ F+ SVTAHK +++S
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVS 58
>gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo
sapiens]
Length = 77
Score = 60.5 bits (145), Expect = 3e-10
Identities = 32/58 (55%), Positives = 38/58 (65%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLS 58
MV P FVP DV+ EFLPSG F+VSLTSR KLQ F+ SVTAHK +++S
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVS 58
>gi|239753906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 54.3 bits (129), Expect = 2e-08
Identities = 29/44 (65%), Positives = 31/44 (70%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHK 44
MV FVPSDV+ PEFLP FVVSLTS KLQ F+ SVT HK
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHK 44
>gi|239748450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 54.3 bits (129), Expect = 2e-08
Identities = 29/44 (65%), Positives = 31/44 (70%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHK 44
MV FVPSDV+ PEFLP FVVSLTS KLQ F+ SVT HK
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHK 44
>gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo
sapiens]
Length = 129
Score = 54.3 bits (129), Expect = 2e-08
Identities = 29/44 (65%), Positives = 31/44 (70%)
Query: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHK 44
MV FVPSDV+ PEFLP FVVSLTS KLQ F+ SVT HK
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHK 44
>gi|239753701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 48.9 bits (115), Expect = 9e-07
Identities = 29/50 (58%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 17 FLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQNRKELPS 66
F+P G FVV KLQ F+ SVTAHK S DP SEQQQ L Q KE S
Sbjct: 39 FVPPGGFVV------KLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSS 82
>gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo
sapiens]
Length = 176
Score = 48.9 bits (115), Expect = 9e-07
Identities = 29/50 (58%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 17 FLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQNRKELPS 66
F+P G FVV KLQ F+ SVTAHK S DP SEQQQ L Q KE S
Sbjct: 39 FVPPGGFVV------KLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSS 82
>gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo
sapiens]
Length = 176
Score = 48.9 bits (115), Expect = 9e-07
Identities = 29/50 (58%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 17 FLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQNRKELPS 66
F+P G FVV KLQ F+ SVTAHK S DP SEQQQ L Q KE S
Sbjct: 39 FVPPGGFVV------KLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSS 82
>gi|38524614 zinc finger protein 773 [Homo sapiens]
Length = 442
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 17 FLPSGEFVVSLTSRGKLQNFSASVTAHKRSA--DPTSEQQQYLSQNRKELP 65
F+P+ E V S RG Q A A + ++ P+S QQ+ Q+ E P
Sbjct: 74 FMPAWEVVTSAILRGSWQGAKAEAAAEQSASVEVPSSNVQQHQKQHCGEKP 124
>gi|209693426 Sma- and Mad-related protein 2 isoform 2 [Homo
sapiens]
Length = 437
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 24 VVSLTSRGKLQNFSASVTAHKRSAD----PTSEQQQYLSQNRKELPSTAYCRGWLVWP 77
V L G+L ++T + P S + +RK LP YCR W WP
Sbjct: 49 VKKLKKTGRLDELEKAITTQNCNTKCVTIPRSLDGRLQVSHRKGLPHVIYCRLWR-WP 105
>gi|5174513 mothers against decapentaplegic homolog 3 isoform 1
[Homo sapiens]
Length = 425
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 24 VVSLTSRGKLQNFSASVTAHKRSAD----PTSEQQQYLSQNRKELPSTAYCRGWLVWP 77
V L G+L ++T + P S + +RK LP YCR W WP
Sbjct: 39 VKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWR-WP 95
>gi|149944540 zinc finger protein 506 isoform 1 [Homo sapiens]
Length = 444
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 3 GPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKR 45
G F+ S E + +GE GK N S+++T HKR
Sbjct: 291 GKAFISSSTLTKHEIIHTGEKPYKCEECGKAFNRSSNLTKHKR 333
>gi|224028219 zinc finger protein 506 isoform 2 [Homo sapiens]
Length = 412
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 3 GPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKR 45
G F+ S E + +GE GK N S+++T HKR
Sbjct: 259 GKAFISSSTLTKHEIIHTGEKPYKCEECGKAFNRSSNLTKHKR 301
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
Length = 1826
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 49 PTSEQQQYLSQNRKELPSTAYCRG-----WLVWPAFIPLFGPTHILLIGPFYR 96
P + QQQ ++ +P A G ++++P F+P PT+ L P R
Sbjct: 1680 PMTSQQQAVAPMSISVPPLALSPGAYGPTYMIYPGFLPTVLPTNALQPTPIAR 1732
>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
Length = 1826
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 49 PTSEQQQYLSQNRKELPSTAYCRG-----WLVWPAFIPLFGPTHILLIGPFYR 96
P + QQQ ++ +P A G ++++P F+P PT+ L P R
Sbjct: 1680 PMTSQQQAVAPMSISVPPLALSPGAYGPTYMIYPGFLPTVLPTNALQPTPIAR 1732
>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
Length = 1826
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 49 PTSEQQQYLSQNRKELPSTAYCRG-----WLVWPAFIPLFGPTHILLIGPFYR 96
P + QQQ ++ +P A G ++++P F+P PT+ L P R
Sbjct: 1680 PMTSQQQAVAPMSISVPPLALSPGAYGPTYMIYPGFLPTVLPTNALQPTPIAR 1732
>gi|118600985 zinc finger protein 91 [Homo sapiens]
Length = 1191
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 3 GPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKR 45
G F S +F+ +GE GK N+S+S+T HKR
Sbjct: 412 GKAFNRSSNLTIHKFIHTGEKPYKCEECGKAFNWSSSLTKHKR 454
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 3 GPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKR 45
G F S +F+ +GE GK N+S+S+T HKR
Sbjct: 720 GKAFNRSSNLTIHKFIHTGEKPYKCEECGKAFNWSSSLTKHKR 762
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 25.8 bits (55), Expect = 7.8
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 10 DVQMY-PEFLPS----GEFVVSLTSRGKLQNFSASVT--------AHKRSADPTS 51
D Q+Y PE LP G FVV +T+R Q + VT H S DPTS
Sbjct: 473 DRQLYRPEPLPEVALPGSFVVRVTARDPDQGTNGQVTYSLAPGAHTHWFSIDPTS 527
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.142 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,562,324
Number of Sequences: 37866
Number of extensions: 186531
Number of successful extensions: 743
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 29
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.