Guide to the Human Genome
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Search of human proteins with 239745187

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo
sapiens]
         (339 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo ...   686   0.0  
gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo ...   686   0.0  
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ...    34   0.16 
gi|239748288 PREDICTED: hypothetical protein [Homo sapiens]            34   0.16 
gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo ...    34   0.16 
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]              32   0.81 
gi|239756135 PREDICTED: similar to AGAP002076-PA [Homo sapiens]        31   1.8  
gi|239750666 PREDICTED: hypothetical protein XP_002347503 [Homo ...    31   1.8  
gi|239744976 PREDICTED: hypothetical protein XP_002343322 [Homo ...    31   1.8  
gi|149773449 zinc finger protein 862 [Homo sapiens]                    30   2.4  
gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]         30   3.1  
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]              29   5.3  
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]              29   5.3  
gi|6912676 SKI-interacting protein [Homo sapiens]                      29   6.9  
gi|239748426 PREDICTED: hypothetical protein, partial [Homo sapi...    28   9.0  
gi|239742359 PREDICTED: hypothetical protein XP_002342501, parti...    28   9.0  
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s...    28   9.0  

>gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo
           sapiens]
          Length = 339

 Score =  686 bits (1771), Expect = 0.0
 Identities = 339/339 (100%), Positives = 339/339 (100%)

Query: 1   MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60
           MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM
Sbjct: 1   MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60

Query: 61  CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120
           CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA
Sbjct: 61  CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120

Query: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180
           AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD
Sbjct: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180

Query: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240
           SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP
Sbjct: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240

Query: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300
           IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL
Sbjct: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300

Query: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339
           ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST
Sbjct: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339


>gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo
           sapiens]
          Length = 339

 Score =  686 bits (1771), Expect = 0.0
 Identities = 339/339 (100%), Positives = 339/339 (100%)

Query: 1   MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60
           MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM
Sbjct: 1   MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60

Query: 61  CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120
           CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA
Sbjct: 61  CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120

Query: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180
           AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD
Sbjct: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180

Query: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240
           SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP
Sbjct: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240

Query: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300
           IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL
Sbjct: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300

Query: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339
           ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST
Sbjct: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339


>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
           sapiens]
          Length = 186

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
           ED +D     V ++ E   A+  +VS    G+H+HV+ LE  GLGKLG
Sbjct: 95  EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 142


>gi|239748288 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
           ED +D     V ++ E   A+  +VS    G+H+HV+ LE  GLGKLG
Sbjct: 38  EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 85


>gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo
           sapiens]
          Length = 129

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
           ED +D     V ++ E   A+  +VS    G+H+HV+ LE  GLGKLG
Sbjct: 38  EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 85


>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
          Length = 2063

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 191  FALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLTFHE 250
            F+ A +P   L + P    Q    L+L + A P+++        PC +SP++PS    H 
Sbjct: 1708 FSSAPVPPNALSSSPAPNIQTGRPLVLSSRATPVQLPSP-----PCTSSPVVPS----HP 1758

Query: 251  DHQDVQELSEGQVAIAILVSQREHGL 276
              Q V+EL+  + +  +  S  ++ L
Sbjct: 1759 PVQQVKELNPDEASPQVNTSADQNTL 1784


>gi|239756135 PREDICTED: similar to AGAP002076-PA [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 56  DARVMCGKGVVLGPLQEKPPSDGVEHGHAADVAP-VVLNEALELLHRLVETAALELLSAQ 114
           DAR+       LG L     + G +  H A V P V+L  ALELL ++   A +E+L+AQ
Sbjct: 258 DARLRGRAQGALGAL-----ASGAQPPHGALVGPNVLLVLALELLRQVAHHAVVEVLTAQ 312

Query: 115 VPAA 118
           V  A
Sbjct: 313 VGVA 316


>gi|239750666 PREDICTED: hypothetical protein XP_002347503 [Homo
           sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 56  DARVMCGKGVVLGPLQEKPPSDGVEHGHAADVAP-VVLNEALELLHRLVETAALELLSAQ 114
           DAR+       LG L     + G +  H A V P V+L  ALELL ++   A +E+L+AQ
Sbjct: 258 DARLRGRAQGALGAL-----ASGAQPPHGALVGPNVLLVLALELLRQVAHHAVVEVLTAQ 312

Query: 115 VPAA 118
           V  A
Sbjct: 313 VGVA 316


>gi|239744976 PREDICTED: hypothetical protein XP_002343322 [Homo
           sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 56  DARVMCGKGVVLGPLQEKPPSDGVEHGHAADVAP-VVLNEALELLHRLVETAALELLSAQ 114
           DAR+       LG L     + G +  H A V P V+L  ALELL ++   A +E+L+AQ
Sbjct: 258 DARLRGRAQGALGAL-----ASGAQPPHGALVGPNVLLVLALELLRQVAHHAVVEVLTAQ 312

Query: 115 VPAA 118
           V  A
Sbjct: 313 VGVA 316


>gi|149773449 zinc finger protein 862 [Homo sapiens]
          Length = 1169

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 268 LVSQREHGLHKHVLGLEAQGLGKLGPAQLTAALISSCSRSSHSWMLNP 315
           ++ +R+  L++ V+ +  + L  LGPA     LIS   R +  W+ +P
Sbjct: 349 MLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDP 396


>gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]
          Length = 931

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 151 LEISMKD-LGLGERNHPALTGACDPDTGHTDSIAPSSLSHLFALASLP--------WPIL 201
           +E S+K+ + +G+ N+P +  +   D   +D+++P   +   +  S+P         P+L
Sbjct: 91  VESSLKEAIIVGQVNYPKVADSSSFDEDSSDALSPEQPASHESQGSVPSPLEARVSEPLL 150

Query: 202 LAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLT 247
            A   +  Q   +L +G ++  +  +  +    P P  P++P SLT
Sbjct: 151 SATSASPTQVVSQLPMGRDSREMLFLAEQ---PPLPPPPLLPPSLT 193


>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
          Length = 1523

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 17/74 (22%)

Query: 138 STTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTDSIAPSSLSHLFALASLP 197
           ST S     +R  LE   K LG+  +N   LT  CDP TGH   +A   +          
Sbjct: 49  STASEETVQNRVSLE---KVLGITAQNSSGLT--CDPGTGHVAYLAGCVV---------- 93

Query: 198 WPILLAVPENKPQH 211
             ++L   ENK QH
Sbjct: 94  --VILDPKENKQQH 105


>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
          Length = 1518

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 17/74 (22%)

Query: 138 STTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTDSIAPSSLSHLFALASLP 197
           ST S     +R  LE   K LG+  +N   LT  CDP TGH   +A   +          
Sbjct: 49  STASEETVQNRVSLE---KVLGITAQNSSGLT--CDPGTGHVAYLAGCVV---------- 93

Query: 198 WPILLAVPENKPQH 211
             ++L   ENK QH
Sbjct: 94  --VILDPKENKQQH 105


>gi|6912676 SKI-interacting protein [Homo sapiens]
          Length = 536

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 2   EVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAP 44
           E   G++ HV  E+G ++E DE+  H  +   +H+R+    AP
Sbjct: 333 ERRAGIKTHVEKEDGEARERDEI-RHDRRKERQHDRNLSRAAP 374


>gi|239748426 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 333

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 189 HLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLTF 248
           H++    +   IL A     PQ  + LI G  A+P ++VH  HK          PS+L  
Sbjct: 181 HIYVCMCIYTYILKAYIWTSPQAKNHLIPGIPAVPPQLVHTLHK----------PSALDA 230

Query: 249 HEDHQD 254
             D +D
Sbjct: 231 RVDFED 236


>gi|239742359 PREDICTED: hypothetical protein XP_002342501, partial
           [Homo sapiens]
          Length = 333

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 189 HLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLTF 248
           H++    +   IL A     PQ  + LI G  A+P ++VH  HK          PS+L  
Sbjct: 181 HIYVCMCIYTYILKAYIWTSPQAKNHLIPGIPAVPPQLVHTLHK----------PSALDA 230

Query: 249 HEDHQD 254
             D +D
Sbjct: 231 RVDFED 236


>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
           sapiens]
          Length = 4911

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 204 VPENKPQHPDELILGNEAIPIKVVHAEHK--ISPCPASPIIPSSLTFHEDHQDVQELSEG 261
           V   +   P +L++ +  +P++ + + H+  IS CP   ++   L   ++ ++  ELS G
Sbjct: 676 VVSREESRPPKLVMESVTLPLETLVSPHEESISLCPEEQLVIERLQGEKEQKENSELSTG 735


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,280,813
Number of Sequences: 37866
Number of extensions: 688698
Number of successful extensions: 1426
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1419
Number of HSP's gapped (non-prelim): 18
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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