Search of human proteins with 239744520

Search of human proteins with 239744520

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744520 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
         (95 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239744520 PREDICTED: hypothetical protein isoform 1 [Homo sap...   184   2e-47
gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]            96   5e-21
gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]            96   5e-21
gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo sap...    96   5e-21
gi|239742514 PREDICTED: similar to Putative POM121-like protein ...    28   1.6  
gi|239742580 PREDICTED: similar to Putative POM121-like protein ...    28   2.1  
gi|56237021 fibrillin 3 precursor [Homo sapiens]                       27   4.6  
gi|24497589 aristaless related homeobox [Homo sapiens]                 27   4.6  
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    26   6.0  
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          26   7.8  

>gi|239744520 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 95

 Score =  184 bits (466), Expect = 2e-47
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDD 60
          MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDD
Sbjct: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDD 60

Query: 61 PVGRMVHLDAAVLSAAGLATASAAATAAAFLCAEF 95
          PVGRMVHLDAAVLSAAGLATASAAATAAAFLCAEF
Sbjct: 61 PVGRMVHLDAAVLSAAGLATASAAATAAAFLCAEF 95


>gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 50/56 (89%), Positives = 50/56 (89%)

Query: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCR 56
          MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPV     S R
Sbjct: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLR 56


>gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 50/56 (89%), Positives = 50/56 (89%)

Query: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCR 56
          MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPV     S R
Sbjct: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLR 56


>gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 155

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 50/56 (89%), Positives = 50/56 (89%)

Query: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCR 56
          MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPV     S R
Sbjct: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLR 56


>gi|239742514 PREDICTED: similar to Putative POM121-like protein
           1-like [Homo sapiens]
          Length = 896

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 6   SQATRVTRSSMVHLQ-VALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDDPVGR 64
           SQA+R   +S +H++  A+S CR    S  L  +A+    G PV +      ++D P  +
Sbjct: 463 SQASRPHINSALHVEDKAISDCRPSRPSHTLSSLATGASRGPPVSKAPTMDAQQDRPKSQ 522

Query: 65  -MVHLDAAVLSAAGLATAS 82
             + L A + SAA L + +
Sbjct: 523 DCLGLLAPLASAAELPSTA 541



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 6   SQATRVTRSSMVHLQ-VALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDDPVGR 64
           SQA+R   +S +H++  A+S CR    S  L  +A+    G PV +      ++D P  +
Sbjct: 735 SQASRPRINSALHVEDKAISDCRPSRPSHTLSSLATGASGGPPVSKAPTMDAQQDRPKSQ 794

Query: 65  -MVHLDAAVLSAAGLATAS 82
             + L A + SAA +++ +
Sbjct: 795 DCLGLVAPLASAAEVSSTA 813


>gi|239742580 PREDICTED: similar to Putative POM121-like protein
           1-like [Homo sapiens]
          Length = 897

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 6   SQATRVTRSSMVHLQ-VALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDDPVGR 64
           SQA+R   +S +H++  A+S CR    S  L  +A+    G PV +      ++D P  +
Sbjct: 736 SQASRPRINSALHVEDKAISDCRPSRPSHTLSSLATGASGGPPVSKAPTMDAQQDRPKSQ 795

Query: 65  -MVHLDAAVLSAAGLATAS 82
             + L A + SAA +++ +
Sbjct: 796 DCLGLLAPLASAAEVSSTA 814


>gi|56237021 fibrillin 3 precursor [Homo sapiens]
          Length = 2809

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 20   QVALSP--CRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDDPVGRMVHLDAAVLSAAG 77
            + ALSP  C + +    LG       +G   D+  G C+  D+  GR            G
Sbjct: 2571 ECALSPPTCGSASCRNTLGGFRCVCPSGFDFDQALGGCQEVDECAGR-----------RG 2619

Query: 78   LATASAAATAAAFLC 92
              + S A T   FLC
Sbjct: 2620 PCSYSCANTPGGFLC 2634


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 24  SPCRTVTLSIALGKVASPLRTGTPVDEEQGSCRREDDPVGRMVHLD-----------AAV 72
           SPC+   L  A    A       P    QGS +    P    +HL              +
Sbjct: 37  SPCKMRLLGAAQSLPAPLTSRADPEKAVQGSPKSSSAPFEAELHLPPKLRRLYGPGGGRL 96

Query: 73  LSAAGLATASAAATAAA 89
           L  A  A A+AAA AAA
Sbjct: 97  LQGAAAAAAAAAAAAAA 113


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 54   SCRREDDPVGRMVHLDAAVLSAAGLATAS 82
            S   E  P  R +H    V+SA GLA ++
Sbjct: 2023 SSEEESSPTSRYIHFPVTVVSAPGLAPSA 2051


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 61  PVGRMVHLDAAVLSAAGLATASAAATAAA 89
           P+ R     AA+ +AA  A A+AAA AAA
Sbjct: 488 PLKRPFSAAAAIAAAAAAAAAAAAAAAAA 516


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,909,388
Number of Sequences: 37866
Number of extensions: 111464
Number of successful extensions: 551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 18
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.