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Search of human proteins with 116534900
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116534900 dopamine beta hydroxylase precursor [Homo sapiens]
(617 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116534900 dopamine beta hydroxylase precursor [Homo sapiens] 1276 0.0
gi|118421087 monooxygenase, DBH-like 1 isoform 2 [Homo sapiens] 294 1e-79
gi|21070984 peptidylglycine alpha-amidating monooxygenase isofor... 94 5e-19
gi|21070982 peptidylglycine alpha-amidating monooxygenase isofor... 94 5e-19
gi|21070980 peptidylglycine alpha-amidating monooxygenase isofor... 94 5e-19
gi|21070974 peptidylglycine alpha-amidating monooxygenase isofor... 94 5e-19
gi|18079321 V-set and transmembrane domain containing 2 like [Ho... 32 1.3
gi|37620181 hect domain and RLD 4 isoform b [Homo sapiens] 32 2.3
gi|38327039 heat shock 70kDa protein 4 [Homo sapiens] 31 3.8
gi|148368962 NKF3 kinase family member [Homo sapiens] 31 3.8
gi|11415040 matriptase [Homo sapiens] 30 6.6
gi|209863030 transient receptor potential cation channel, subfam... 30 6.6
gi|209863028 transient receptor potential cation channel, subfam... 30 6.6
gi|209863026 transient receptor potential cation channel, subfam... 30 6.6
gi|209863024 transient receptor potential cation channel, subfam... 30 6.6
gi|7706747 transient receptor potential cation channel, subfamil... 30 6.6
gi|40548375 T-cell leukemia/lymphoma 1B [Homo sapiens] 30 8.6
gi|4759220 T-cell leukemia/lymphoma 1B [Homo sapiens] 30 8.6
>gi|116534900 dopamine beta hydroxylase precursor [Homo sapiens]
Length = 617
Score = 1276 bits (3302), Expect = 0.0
Identities = 617/617 (100%), Positives = 617/617 (100%)
Query: 1 MPALSRWASLPGPSMREAAFMYSTAVAIFLVILVAALQGSAPRESPLPYHIPLDPEGSLE 60
MPALSRWASLPGPSMREAAFMYSTAVAIFLVILVAALQGSAPRESPLPYHIPLDPEGSLE
Sbjct: 1 MPALSRWASLPGPSMREAAFMYSTAVAIFLVILVAALQGSAPRESPLPYHIPLDPEGSLE 60
Query: 61 LSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENADLVVLWTDGDTAYFADAWSDQK 120
LSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENADLVVLWTDGDTAYFADAWSDQK
Sbjct: 61 LSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENADLVVLWTDGDTAYFADAWSDQK 120
Query: 121 GQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDYLIEDGTVHLVYGILEEPFRSL 180
GQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDYLIEDGTVHLVYGILEEPFRSL
Sbjct: 121 GQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDYLIEDGTVHLVYGILEEPFRSL 180
Query: 181 EAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAPNIQIPSQETTYWCYIKELPKG 240
EAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAPNIQIPSQETTYWCYIKELPKG
Sbjct: 181 EAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAPNIQIPSQETTYWCYIKELPKG 240
Query: 241 FSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHFSGPCDSKMKPDRLNYCRHVLA 300
FSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHFSGPCDSKMKPDRLNYCRHVLA
Sbjct: 241 FSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHFSGPCDSKMKPDRLNYCRHVLA 300
Query: 301 AWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLVIEGRNDSSGIRLYYTAKLRRF 360
AWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLVIEGRNDSSGIRLYYTAKLRRF
Sbjct: 301 AWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLVIEGRNDSSGIRLYYTAKLRRF 360
Query: 361 NAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKV 420
NAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKV
Sbjct: 361 NAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKV 420
Query: 421 VTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGG 480
VTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGG
Sbjct: 421 VTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGG 480
Query: 481 FGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLINRFNNEDVCTCPQASVSQQFT 540
FGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLINRFNNEDVCTCPQASVSQQFT
Sbjct: 481 FGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLINRFNNEDVCTCPQASVSQQFT 540
Query: 541 SVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVISTLEEPTPQCPTSQ 600
SVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVISTLEEPTPQCPTSQ
Sbjct: 541 SVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVISTLEEPTPQCPTSQ 600
Query: 601 GRSPAGPTVVSIGGGKG 617
GRSPAGPTVVSIGGGKG
Sbjct: 601 GRSPAGPTVVSIGGGKG 617
>gi|118421087 monooxygenase, DBH-like 1 isoform 2 [Homo sapiens]
Length = 613
Score = 294 bits (753), Expect = 1e-79
Identities = 193/595 (32%), Positives = 289/595 (48%), Gaps = 37/595 (6%)
Query: 30 LVILVAALQGSAPRES--PLPYHIPLDPEGSLELSWNVSYTQEAIHFQLLVRRLKAGVLF 87
L++L L G+A S P+ LD EG L W+ +Q A Q+ R V F
Sbjct: 6 LLLLWGLLPGTAAGGSGRTYPHRTLLDSEGKYWLGWSQRGSQIAFRLQV---RTAGYVGF 62
Query: 88 GMSDRGELENADLVVLWTDGDTAYFADAWSDQKGQIHLDPQQDYQLLQVQRTPEGLTLLF 147
G S G + +AD+VV Y D +++ ++ D QQDY L + F
Sbjct: 63 GFSPTGAMASADIVVGGVAHGRPYLQDYFTNANRELKKDAQQDYHLEYAMENSTHTIIEF 122
Query: 148 KRPFGTCDPKDYLIEDGTVHLVYGILEEPFRSLEAINGSGLQMGLQRVQLLKPNIPEPEL 207
R TCD D I D TV +++ E G + ++LL P L
Sbjct: 123 TRELHTCDINDKSITDSTVRVIWAYHHEDAGEAGPKYHDS-NRGTKSLRLLNPE-KTSVL 180
Query: 208 PSDACTMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVF 267
+ ++ ++ IP+++TTYWC + ++P +HH+IK EP++ +G+E+LVHH+ ++
Sbjct: 181 STALPYFDLVNQDVPIPNKDTTYWCQMFKIPVFQEKHHVIKVEPVIQRGHESLVHHILLY 240
Query: 268 QCAPEM-DSVPHFSGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAFGGPGSSR 326
QC+ DSV C PD C V+ AWA+G + F YP GL+ G P
Sbjct: 241 QCSNNFNDSVLESGHECYHPNMPDAFLTCETVIFAWAIGGEGFSYPPHVGLSLGTPLDPH 300
Query: 327 YLRLEVHYHNPLVIEGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIPPRETAFIL 386
Y+ LEVHY NP EG D+SG+RL+YT +R+++AG++E GL + IPP F
Sbjct: 301 YVLLEVHYDNPTYEEGLIDNSGLRLFYTMDIRKYDAGVIEAGLWVSLFHTIPPGMPEFQS 360
Query: 387 TGYCTDKCTQLAL---PPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDNHYSPH 443
G+CT +C + AL PSGIH+FA LH HL GR + R G+E +++ D+ + +
Sbjct: 361 EGHCTLECLEEALEAEKPSGIHVFAVLLHAHLAGRGIRLRHFRKGKEMKLLAYDDDFDFN 420
Query: 444 FQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQTQLELC 503
FQE + LK+ ++ PGD LIT C YNT+DR T GG EMC++Y+ YYP+ L C
Sbjct: 421 FQEFQYLKEEQTILPGDNLITECRYNTKDRAEMTWGGLSTRSEMCLSYLLYYPRINLTRC 480
Query: 504 KSAVDAGFLQKYFHLINRFNNEDVCTCP----------QASVSQQFTSVPWN-----SFN 548
S D +++ + + V T P S W SFN
Sbjct: 481 ASIPD--IMEQLQFIGVKEIYRPVTTWPFIIKSPKQYKNLSFMDAMNKFKWTKKEGLSFN 538
Query: 549 RDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVISTLEEPTPQCPTSQGRS 603
+ VL P+++ C+K+ EW++Q + + +E P P G S
Sbjct: 539 KLVLS-----LPVNVRCSKTD----NAEWSIQGMTALPPDIERPYKAEPLVCGTS 584
>gi|21070984 peptidylglycine alpha-amidating monooxygenase isoform a
preproprotein [Homo sapiens]
Length = 974
Score = 93.6 bits (231), Expect = 5e-19
Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 33/301 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P +P D+ ++++ P + P Q TY+C +P +I ++P + + VH
Sbjct: 48 PVVPIDSSDFALDIRMPGVT-PKQSDTYFCMSMRIPVD-EEAFVIDFKP---RASMDTVH 102
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 103 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 153
Query: 320 GGPGSSRYLRLEVHYHNPLVIEGRN-DSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + N D SG+ L+ T + AG+ + V T IP
Sbjct: 154 GGETGSKYFVLQVHYGDISAFRDNNKDCSGVSLHLTRLPQPLIAGMYLMMSVDT---VIP 210
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
E C K + H+FA ++HTH G+ V VR+G +W ++ + +
Sbjct: 211 AGEKVVNSDISCHYKNYPM-------HVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQS 262
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q + V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 263 PQLP--QAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 320
Query: 499 Q 499
+
Sbjct: 321 K 321
>gi|21070982 peptidylglycine alpha-amidating monooxygenase isoform d
preproprotein [Homo sapiens]
Length = 887
Score = 93.6 bits (231), Expect = 5e-19
Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 33/301 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P +P D+ ++++ P + P Q TY+C +P +I ++P + + VH
Sbjct: 48 PVVPIDSSDFALDIRMPGVT-PKQSDTYFCMSMRIPVD-EEAFVIDFKP---RASMDTVH 102
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 103 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 153
Query: 320 GGPGSSRYLRLEVHYHNPLVIEGRN-DSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + N D SG+ L+ T + AG+ + V T IP
Sbjct: 154 GGETGSKYFVLQVHYGDISAFRDNNKDCSGVSLHLTRLPQPLIAGMYLMMSVDT---VIP 210
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
E C K + H+FA ++HTH G+ V VR+G +W ++ + +
Sbjct: 211 AGEKVVNSDISCHYKNYPM-------HVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQS 262
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q + V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 263 PQLP--QAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 320
Query: 499 Q 499
+
Sbjct: 321 K 321
>gi|21070980 peptidylglycine alpha-amidating monooxygenase isoform c
preproprotein [Homo sapiens]
Length = 866
Score = 93.6 bits (231), Expect = 5e-19
Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 33/301 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P +P D+ ++++ P + P Q TY+C +P +I ++P + + VH
Sbjct: 48 PVVPIDSSDFALDIRMPGVT-PKQSDTYFCMSMRIPVD-EEAFVIDFKP---RASMDTVH 102
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 103 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 153
Query: 320 GGPGSSRYLRLEVHYHNPLVIEGRN-DSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + N D SG+ L+ T + AG+ + V T IP
Sbjct: 154 GGETGSKYFVLQVHYGDISAFRDNNKDCSGVSLHLTRLPQPLIAGMYLMMSVDT---VIP 210
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
E C K + H+FA ++HTH G+ V VR+G +W ++ + +
Sbjct: 211 AGEKVVNSDISCHYKNYPM-------HVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQS 262
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q + V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 263 PQLP--QAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 320
Query: 499 Q 499
+
Sbjct: 321 K 321
>gi|21070974 peptidylglycine alpha-amidating monooxygenase isoform b
preproprotein [Homo sapiens]
Length = 905
Score = 93.6 bits (231), Expect = 5e-19
Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 33/301 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P +P D+ ++++ P + P Q TY+C +P +I ++P + + VH
Sbjct: 48 PVVPIDSSDFALDIRMPGVT-PKQSDTYFCMSMRIPVD-EEAFVIDFKP---RASMDTVH 102
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 103 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 153
Query: 320 GGPGSSRYLRLEVHYHNPLVIEGRN-DSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + N D SG+ L+ T + AG+ + V T IP
Sbjct: 154 GGETGSKYFVLQVHYGDISAFRDNNKDCSGVSLHLTRLPQPLIAGMYLMMSVDT---VIP 210
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
E C K + H+FA ++HTH G+ V VR+G +W ++ + +
Sbjct: 211 AGEKVVNSDISCHYKNYPM-------HVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQS 262
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q + V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 263 PQLP--QAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 320
Query: 499 Q 499
+
Sbjct: 321 K 321
>gi|18079321 V-set and transmembrane domain containing 2 like [Homo
sapiens]
Length = 204
Score = 32.3 bits (72), Expect = 1.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 224 PSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAP 271
P+ E TY C + + G +RHH +K V G +++H E AP
Sbjct: 134 PTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAAP 181
>gi|37620181 hect domain and RLD 4 isoform b [Homo sapiens]
Length = 1049
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 393 KCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVR-DGREWEIVNQDNHYSPHFQE----- 446
K ++ +PPS IF S LHT L KV+ +L R + + +I+ D Y QE
Sbjct: 572 KLYKIGIPPSERRIFNSFLHTAL---KVLEILHRVNEKMGQIIQYDKFYIHEVQELIDIR 628
Query: 447 ---IRMLKKVVSVHPGDVLITSCTY 468
I +++ D+ +T CTY
Sbjct: 629 NDYINWVQQQAYGMLADIPVTICTY 653
>gi|38327039 heat shock 70kDa protein 4 [Homo sapiens]
Length = 840
Score = 30.8 bits (68), Expect = 3.8
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 373 PVMAIPPRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRD----- 427
P + PR F+ G+ + + A + + A+ T L GRK VLV
Sbjct: 189 PALEEKPRNVVFVDMGHSAYQVSVCAFNRGKLKVLATAFDTTLGGRKFDEVLVNHFCEEF 248
Query: 428 GREW--EIVNQDNHYSPHFQEIRMLKKVVSVHPGDV-LITSCTYNTEDRELATVGGFGIL 484
G+++ +I ++ QE LKK++S + D+ L C N D +++ G
Sbjct: 249 GKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLSIECFMN--DVDVSGTMNRGKF 306
Query: 485 EEMC 488
EMC
Sbjct: 307 LEMC 310
>gi|148368962 NKF3 kinase family member [Homo sapiens]
Length = 1746
Score = 30.8 bits (68), Expect = 3.8
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 548 NRDVLKALYSFAPISMHCNKSSAVRFQGEWN-----LQPLPKVISTLEEPTPQCPTSQG- 601
N V + + IS H KSSA+R+Q W Q +PKV P P +
Sbjct: 506 NSPVTSSSLTPGQISAHFQKSSAIRYQEVWTSSTSPRQKIPKVELITSGTGPNVPPRKNC 565
Query: 602 --RSPAGPTVVSI 612
+P PT +I
Sbjct: 566 HKSAPTSPTATNI 578
>gi|11415040 matriptase [Homo sapiens]
Length = 855
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 512 LQKYFHLINRFNNEDVCTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAV 571
+QK F+ R NE+ + S S +F S+ S +D LK LYS P +K SAV
Sbjct: 86 VQKVFNGYMRITNENFVDAYENSNSTEFVSLA--SKVKDALKLLYSGVPFLGPYHKESAV 143
>gi|209863030 transient receptor potential cation channel, subfamily
C, member 4 isoform delta [Homo sapiens]
Length = 836
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKV-- 585
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 586 --ISTLEEPTPQC 596
S EE + QC
Sbjct: 236 EFKSEYEELSRQC 248
>gi|209863028 transient receptor potential cation channel, subfamily
C, member 4 isoform gamma [Homo sapiens]
Length = 828
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKV-- 585
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 586 --ISTLEEPTPQC 596
S EE + QC
Sbjct: 236 EFKSEYEELSRQC 248
>gi|209863026 transient receptor potential cation channel, subfamily
C, member 4 isoform beta [Homo sapiens]
Length = 893
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKV-- 585
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 586 --ISTLEEPTPQC 596
S EE + QC
Sbjct: 236 EFKSEYEELSRQC 248
>gi|209863024 transient receptor potential cation channel, subfamily
C, member 4 isoform epsilon [Homo sapiens]
Length = 982
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKV-- 585
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 586 --ISTLEEPTPQC 596
S EE + QC
Sbjct: 236 EFKSEYEELSRQC 248
>gi|7706747 transient receptor potential cation channel, subfamily
C, member 4 isoform alpha [Homo sapiens]
Length = 977
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKV-- 585
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 586 --ISTLEEPTPQC 596
S EE + QC
Sbjct: 236 EFKSEYEELSRQC 248
>gi|40548375 T-cell leukemia/lymphoma 1B [Homo sapiens]
Length = 128
Score = 29.6 bits (65), Expect = 8.6
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 391 TDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVR---DGREWEIVNQDNHYSP 442
++ +L +PP + I ++ GR VTV+VR REW +Q + Y P
Sbjct: 3 SEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEP 57
>gi|4759220 T-cell leukemia/lymphoma 1B [Homo sapiens]
Length = 128
Score = 29.6 bits (65), Expect = 8.6
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 391 TDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVR---DGREWEIVNQDNHYSP 442
++ +L +PP + I ++ GR VTV+VR REW +Q + Y P
Sbjct: 3 SEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEP 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,630,106
Number of Sequences: 37866
Number of extensions: 1299499
Number of successful extensions: 2853
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2833
Number of HSP's gapped (non-prelim): 19
length of query: 617
length of database: 18,247,518
effective HSP length: 108
effective length of query: 509
effective length of database: 14,157,990
effective search space: 7206416910
effective search space used: 7206416910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.