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Search of human proteins with 239743480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 186 3e-48
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 160 2e-40
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 159 3e-40
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 80 3e-16
gi|83699414 beta-defensin 130 [Homo sapiens] 80 3e-16
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 75 1e-14
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 75 1e-14
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 75 1e-14
gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 72 9e-14
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 72 9e-14
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 72 9e-14
gi|8923890 defensin, beta 103A precursor [Homo sapiens] 36 0.006
gi|125656159 beta-defensin 103B precursor [Homo sapiens] 36 0.006
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 33 0.037
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 33 0.037
gi|50344744 beta-defensin 108B [Homo sapiens] 30 0.53
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 29 0.91
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 29 0.91
gi|83582794 beta-defensin 110 [Homo sapiens] 28 1.2
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|221316654 neuropeptide FF receptor 2 isoform 1 [Homo sapiens] 27 4.5
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 27 4.5
gi|31377715 solute carrier family 13 member 3 isoform a [Homo sa... 26 5.9
gi|17402931 sperm associated antigen 11B isoform C preproprotein... 26 5.9
gi|154816178 chemokine (C-X-C motif) ligand 16 [Homo sapiens] 26 7.7
gi|154816176 chemokine (C-X-C motif) ligand 16 [Homo sapiens] 26 7.7
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 186 bits (473), Expect = 3e-48
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC
Sbjct: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
Query: 61 RAWWILMPIPTPLIMSDYQEPLKPNLK 87
RAWWILMPIPTPLIMSDYQEPLKPNLK
Sbjct: 61 RAWWILMPIPTPLIMSDYQEPLKPNLK 87
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 160 bits (405), Expect = 2e-40
Identities = 78/88 (88%), Positives = 81/88 (92%), Gaps = 2/88 (2%)
Query: 1 MRLHLLLLILLLFSILLSPV-RGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKC 59
MRLHLLLLILL FSILLSP +GGLGPAEGHCLNL GVCR DVC +VEDQIGACRR+MKC
Sbjct: 1 MRLHLLLLILL-FSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKC 59
Query: 60 CRAWWILMPIPTPLIMSDYQEPLKPNLK 87
CRAWWILMPIPTPLIMSDYQEPLKP LK
Sbjct: 60 CRAWWILMPIPTPLIMSDYQEPLKPKLK 87
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 159 bits (403), Expect = 3e-40
Identities = 74/83 (89%), Positives = 78/83 (93%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+RLH+LLLILLLFSILLSPVRG LGPAE HCL+L GVCR DVC +VEDQIGACRRRMKCC
Sbjct: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
Query: 61 RAWWILMPIPTPLIMSDYQEPLK 83
RAWWILMPIPTPLIMSDYQEPLK
Sbjct: 124 RAWWILMPIPTPLIMSDYQEPLK 146
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 79
Score = 80.1 bits (196), Expect = 3e-16
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C KCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 61 RRWWILEPYPTPV 73
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 80.1 bits (196), Expect = 3e-16
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C KCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 61 RRWWILEPYPTPV 73
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 74.7 bits (182), Expect = 1e-14
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 2 RLHLLLLILLLFSILLSPVR-GGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C KCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 110 RRWWILEPYPTPV 122
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 74.7 bits (182), Expect = 1e-14
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 2 RLHLLLLILLLFSILLSPVR-GGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C KCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 110 RRWWILEPYPTPV 122
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 74.7 bits (182), Expect = 1e-14
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 2 RLHLLLLILLLFSILLSPVR-GGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C KCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 110 RRWWILEPYPTPV 122
>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 72.0 bits (175), Expect = 9e-14
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 72.0 bits (175), Expect = 9e-14
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 72.0 bits (175), Expect = 9e-14
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
Length = 67
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGL--GPAEGHCLNLFGVCRTDVCNIVEDQIGACRRR-M 57
MR+H LL LL ++ P GG+ + +C G C C E+QIG C R
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 58 KCCR 61
KCCR
Sbjct: 61 KCCR 64
>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
Length = 67
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGL--GPAEGHCLNLFGVCRTDVCNIVEDQIGACRRR-M 57
MR+H LL LL ++ P GG+ + +C G C C E+QIG C R
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 58 KCCR 61
KCCR
Sbjct: 61 KCCR 64
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
MR L L +L F L+P + + C L G C+ + C E+ I C++ +KCC
Sbjct: 1 MRTFLFLFAVLFF---LTPAKNAF--FDEKCNKLKGTCKNN-CGKNEELIALCQKSLKCC 54
Query: 61 R 61
R
Sbjct: 55 R 55
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
MR L L +L F L+P + + C L G C+ + C E+ I C++ +KCC
Sbjct: 1 MRTFLFLFAVLFF---LTPAKNAF--FDEKCNKLKGTCKNN-CGKNEELIALCQKSLKCC 54
Query: 61 R 61
R
Sbjct: 55 R 55
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 29.6 bits (65), Expect = 0.53
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
MR+ +LL + F + P RG C G CR D C E +G C CC
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSQPCC 56
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
MR+ +LL + F + P RG C G CR D C E +G C CC
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSRPCC 56
>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
Length = 121
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 6 LLLILLLFSILLSPVRGGLGPAEGHCLNLFGVC-RTDVCNIVEDQIGACRRRMKCCRA 62
LLL+ LLF L RG L P + + L L C R C + G C+R C +
Sbjct: 7 LLLLFLLFFFLFLLTRGSLSPTKYNLLELKESCIRNQDC-----ETGCCQRAPDNCES 59
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 3 LHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+ LL L L + + PV +GHC L C ED I CR R +CC
Sbjct: 1 MKLLYLFLAILLAIEEPVISVECWMDGHCRLL--------CKDGEDSIIRCRNRKRCC 50
>gi|83582794 beta-defensin 110 [Homo sapiens]
Length = 62
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 6 LLLILLLFSILLSPVRGGLGPAEG--HCLNLFGVCRTDVCNIVEDQIGAC-RRRMKCC 60
L +L F + + P R P C + G+C+T C+ VE G C + R +CC
Sbjct: 5 LFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKT-FCDDVEYDYGYCIKWRSQCC 61
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+R+ +LL + F + P RG C G CR D C E +G C CC
Sbjct: 11 VRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSRPCC 66
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+R+ +LL + F + P RG C G CR D C E +G C CC
Sbjct: 11 VRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSRPCC 66
>gi|221316654 neuropeptide FF receptor 2 isoform 1 [Homo sapiens]
Length = 522
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 54 RRRMKCCR-AWWILMP 68
R R CCR AWWIL+P
Sbjct: 76 RDRTCCCRRAWWILVP 91
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 3 LHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
+++L+L ++ +L +G P + N+ G CR C E I CR ++ CC
Sbjct: 1 MNILMLTFIICGLLTRVTKGSFEPQKCWKNNV-GHCRRR-CLDTERYILLCRNKLSCC 56
>gi|31377715 solute carrier family 13 member 3 isoform a [Homo
sapiens]
Length = 602
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 7 LLILLLFSILLSPVRGGLGPAEGHCL 32
LL+LL + L PV L P EG CL
Sbjct: 17 LLVLLFTPLALLPVVFALPPKEGRCL 42
>gi|17402931 sperm associated antigen 11B isoform C preproprotein
[Homo sapiens]
Length = 113
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 31 CLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
C G C+ + CN +E Q+G C ++ C
Sbjct: 82 CRRSEGFCQ-EYCNYMETQVGYCSKKKDAC 110
>gi|154816178 chemokine (C-X-C motif) ligand 16 [Homo sapiens]
Length = 273
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 5 LLLLILLLFSILLSPVRGGLGPAEGHC 31
LLLL+LLL L P G G G C
Sbjct: 31 LLLLLLLLLVYLTQPGNGNEGSVTGSC 57
>gi|154816176 chemokine (C-X-C motif) ligand 16 [Homo sapiens]
Length = 273
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 5 LLLLILLLFSILLSPVRGGLGPAEGHC 31
LLLL+LLL L P G G G C
Sbjct: 31 LLLLLLLLLVYLTQPGNGNEGSVTGSC 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.148 0.507
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,878,914
Number of Sequences: 37866
Number of extensions: 157515
Number of successful extensions: 395
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 28
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Search sequences |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.