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Search of human proteins with 239743246
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743246 PREDICTED: hypothetical protein XP_002342778 [Homo
sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743246 PREDICTED: hypothetical protein XP_002342778 [Homo ... 516 e-147
gi|169170512 PREDICTED: similar to Postmeiotic segregation incre... 516 e-147
gi|4505913 PMS2 postmeiotic segregation increased 2 isoform a [H... 316 1e-86
gi|189458898 postmeiotic segregation 1 isoform c [Homo sapiens] 125 5e-29
gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens] 125 5e-29
gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens] 125 5e-29
gi|4557757 MutL protein homolog 1 [Homo sapiens] 98 8e-21
gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens] 58 7e-09
gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens] 58 7e-09
gi|119120861 formin-like 3 isoform 2 [Homo sapiens] 32 0.54
gi|119120874 formin-like 3 isoform 1 [Homo sapiens] 32 0.54
gi|169211534 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|169218016 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|169210726 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|239755250 PREDICTED: chromosome 10 open reading frame 112 [Ho... 28 5.9
gi|239749752 PREDICTED: chromosome 10 open reading frame 112 [Ho... 28 5.9
gi|239744011 PREDICTED: chromosome 10 open reading frame 112 [Ho... 28 5.9
>gi|239743246 PREDICTED: hypothetical protein XP_002342778 [Homo
sapiens]
Length = 255
Score = 516 bits (1328), Expect = e-147
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MLSVFKKEDTIIAKDFGNLRDTITEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGN 60
MLSVFKKEDTIIAKDFGNLRDTITEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGN
Sbjct: 1 MLSVFKKEDTIIAKDFGNLRDTITEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGN 60
Query: 61 SLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKHHTSKIREFADLTRVETFG 120
SLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKHHTSKIREFADLTRVETFG
Sbjct: 61 SLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKHHTSKIREFADLTRVETFG 120
Query: 121 FQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFST 180
FQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFST
Sbjct: 121 FQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFST 180
Query: 181 LPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQPAKLTPRSTPPHPCSLEDNV 240
LPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQPAKLTPRSTPPHPCSLEDNV
Sbjct: 181 LPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQPAKLTPRSTPPHPCSLEDNV 240
Query: 241 ITVFSSVKNGPGSSR 255
ITVFSSVKNGPGSSR
Sbjct: 241 ITVFSSVKNGPGSSR 255
>gi|169170512 PREDICTED: similar to Postmeiotic segregation
increased 4-like protein [Homo sapiens]
Length = 255
Score = 516 bits (1328), Expect = e-147
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MLSVFKKEDTIIAKDFGNLRDTITEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGN 60
MLSVFKKEDTIIAKDFGNLRDTITEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGN
Sbjct: 1 MLSVFKKEDTIIAKDFGNLRDTITEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGN 60
Query: 61 SLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKHHTSKIREFADLTRVETFG 120
SLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKHHTSKIREFADLTRVETFG
Sbjct: 61 SLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKHHTSKIREFADLTRVETFG 120
Query: 121 FQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFST 180
FQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFST
Sbjct: 121 FQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFST 180
Query: 181 LPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQPAKLTPRSTPPHPCSLEDNV 240
LPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQPAKLTPRSTPPHPCSLEDNV
Sbjct: 181 LPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQPAKLTPRSTPPHPCSLEDNV 240
Query: 241 ITVFSSVKNGPGSSR 255
ITVFSSVKNGPGSSR
Sbjct: 241 ITVFSSVKNGPGSSR 255
>gi|4505913 PMS2 postmeiotic segregation increased 2 isoform a [Homo
sapiens]
Length = 862
Score = 316 bits (810), Expect = 1e-86
Identities = 157/174 (90%), Positives = 168/174 (96%)
Query: 24 TEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEV 83
TEPAKAIKPIDRKSVHQICSG VVLSLSTAVK++V NSLDAGATNIDLKLKDYG+DLIEV
Sbjct: 9 TEPAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEV 68
Query: 84 SGNGCGVEEENFEGLTLKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVS 143
S NGCGVEEENFEGLTLKHHTSKI+EFADLT+VETFGF+G+ALSSLCALSDVTISTCH S
Sbjct: 69 SDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHAS 128
Query: 144 AKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRA 197
AKVGTRL+FDH+GKIIQKTPYP PRGTTVSV+QLFSTLPVRHKEFQRNIKK+ A
Sbjct: 129 AKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYA 182
>gi|189458898 postmeiotic segregation 1 isoform c [Homo sapiens]
Length = 770
Score = 125 bits (313), Expect = 5e-29
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 30 IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 89
+K + +V + S ++ S+ + VK+++ NSLDAGAT++D+KL++YG D IEV NG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 90 VEEENFEGLTLKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKVGTR 149
++ + + +K++TSKI DL + T+GF+G+AL S+C +++V I+T + T+
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 150 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKK 194
V D G I+ + P +GTTV+ +LF LPVR K+F KK
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVR-KQFYSTAKK 164
>gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens]
Length = 893
Score = 125 bits (313), Expect = 5e-29
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 30 IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 89
+K + +V + S ++ S+ + VK+++ NSLDAGAT++D+KL++YG D IEV NG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 90 VEEENFEGLTLKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKVGTR 149
++ + + +K++TSKI DL + T+GF+G+AL S+C +++V I+T + T+
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 150 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKK 194
V D G I+ + P +GTTV+ +LF LPVR K+F KK
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVR-KQFYSTAKK 164
>gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens]
Length = 932
Score = 125 bits (313), Expect = 5e-29
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 30 IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 89
+K + +V + S ++ S+ + VK+++ NSLDAGAT++D+KL++YG D IEV NG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 90 VEEENFEGLTLKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKVGTR 149
++ + + +K++TSKI DL + T+GF+G+AL S+C +++V I+T + T+
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 150 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKK 194
V D G I+ + P +GTTV+ +LF LPVR K+F KK
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVR-KQFYSTAKK 164
>gi|4557757 MutL protein homolog 1 [Homo sapiens]
Length = 756
Score = 97.8 bits (242), Expect = 8e-21
Identities = 56/164 (34%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
Query: 27 AKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGN 86
A I+ +D V++I +G V+ + A+K+++ N LDA +T+I + +K+ G+ LI++ N
Sbjct: 5 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDN 64
Query: 87 GCGVEEENFEGLTLKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKV 146
G G+ +E+ + + + TSK++ F DL + T+GF+G+AL+S+ ++ VTI+T K
Sbjct: 65 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKC 124
Query: 147 GTRLVFDHDGKIIQKTPYPHP----RGTTVSVKQLFSTLPVRHK 186
R + DGK+ K P P P +GT ++V+ LF + R K
Sbjct: 125 AYRASYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNIATRRK 164
>gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens]
Length = 1453
Score = 58.2 bits (139), Expect = 7e-09
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 43 SGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKH 102
SG + SL V+++ NS+DA A + +++ ++V NG G+ ++ E + ++
Sbjct: 15 SGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETFQ-VQVIDNGFGMGSDDVEKVGNRY 73
Query: 103 HTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKT 162
TSK DL +GF+G+AL+++ ++ + + + T + GK ++
Sbjct: 74 FTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTFVKLFQSGKALKAC 133
Query: 163 PYPHPR---GTTVSVKQLFSTLPVRHK 186
R GTTV+V LF LPVR K
Sbjct: 134 EADVTRASAGTTVTVYNLFYQLPVRRK 160
>gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens]
Length = 1429
Score = 58.2 bits (139), Expect = 7e-09
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 43 SGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLTLKH 102
SG + SL V+++ NS+DA A + +++ ++V NG G+ ++ E + ++
Sbjct: 15 SGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETFQ-VQVIDNGFGMGSDDVEKVGNRY 73
Query: 103 HTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKVGTRLVFDHDGKIIQKT 162
TSK DL +GF+G+AL+++ ++ + + + T + GK ++
Sbjct: 74 FTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTFVKLFQSGKALKAC 133
Query: 163 PYPHPR---GTTVSVKQLFSTLPVRHK 186
R GTTV+V LF LPVR K
Sbjct: 134 EADVTRASAGTTVTVYNLFYQLPVRRK 160
>gi|119120861 formin-like 3 isoform 2 [Homo sapiens]
Length = 976
Score = 32.0 bits (71), Expect = 0.54
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 211 EGSPAMLPVQPAKLTPRSTP-PHPCSLEDNVITVFSSVKNGPGSSR 255
EG P P P L P P P PC LE+ V SS+ P +R
Sbjct: 8 EGVPGEPPSVPLLLPPGKMPMPEPCELEERFALVLSSMNLPPDKAR 53
>gi|119120874 formin-like 3 isoform 1 [Homo sapiens]
Length = 1027
Score = 32.0 bits (71), Expect = 0.54
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 211 EGSPAMLPVQPAKLTPRSTP-PHPCSLEDNVITVFSSVKNGPGSSR 255
EG P P P L P P P PC LE+ V SS+ P +R
Sbjct: 8 EGVPGEPPSVPLLLPPGKMPMPEPCELEERFALVLSSMNLPPDKAR 53
>gi|169211534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 31.6 bits (70), Expect = 0.70
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 162 TPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQP 221
TP PH G V+ + S P E + + A F ++ R C L G AM+P Q
Sbjct: 66 TPVPHSAGPQVT--RFHSPSPPHISELSQTL---HAPFQGSWPRPCHALSGPRAMVPNQL 120
Query: 222 AKLTP-RSTPPHPCSLEDNVITVFS 245
TP + PH C++ +F+
Sbjct: 121 HPGTPCPAHVPHSCTMPAGTCPLFT 145
>gi|169218016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 31.6 bits (70), Expect = 0.70
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 162 TPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQP 221
TP PH G V+ + S P E + + A F ++ R C L G AM+P Q
Sbjct: 66 TPVPHSAGPQVT--RFHSPSPPHISELSQTL---HAPFQGSWPRPCHALSGPRAMVPNQL 120
Query: 222 AKLTP-RSTPPHPCSLEDNVITVFS 245
TP + PH C++ +F+
Sbjct: 121 HPGTPCPAHVPHSCTMPAGTCPLFT 145
>gi|169210726 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 31.6 bits (70), Expect = 0.70
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 162 TPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQP 221
TP PH G V+ + S P E + + A F ++ R C L G AM+P Q
Sbjct: 66 TPVPHSAGPQVT--RFHSPSPPHISELSQTL---HAPFQGSWPRPCHALSGPRAMVPNQL 120
Query: 222 AKLTP-RSTPPHPCSLEDNVITVFS 245
TP + PH C++ +F+
Sbjct: 121 HPGTPCPAHVPHSCTMPAGTCPLFT 145
>gi|239755250 PREDICTED: chromosome 10 open reading frame 112 [Homo
sapiens]
Length = 1542
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 206 DCQFLEGS-PAMLPVQPAKLTPRSTPPHPCS 235
DC G+ PA LP P P + PPH C+
Sbjct: 386 DCTLYPGNLPADLPTPPETSVPVTLPPHNCT 416
>gi|239749752 PREDICTED: chromosome 10 open reading frame 112 [Homo
sapiens]
Length = 1817
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 206 DCQFLEGS-PAMLPVQPAKLTPRSTPPHPCS 235
DC G+ PA LP P P + PPH C+
Sbjct: 661 DCTLYPGNLPADLPTPPETSVPVTLPPHNCT 691
>gi|239744011 PREDICTED: chromosome 10 open reading frame 112 [Homo
sapiens]
Length = 1817
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 206 DCQFLEGS-PAMLPVQPAKLTPRSTPPHPCS 235
DC G+ PA LP P P + PPH C+
Sbjct: 661 DCTLYPGNLPADLPTPPETSVPVTLPPHNCT 691
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,399,772
Number of Sequences: 37866
Number of extensions: 465601
Number of successful extensions: 1207
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 17
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.