Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239742771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742771 PREDICTED: hypothetical protein XP_002342648 [Homo
sapiens]
(81 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742771 PREDICTED: hypothetical protein XP_002342648 [Homo ... 162 5e-41
gi|153252198 septin 14 [Homo sapiens] 112 6e-26
gi|169172800 PREDICTED: similar to Putative uncharacterized prot... 94 2e-20
gi|239742767 PREDICTED: hypothetical protein XP_002342632 [Homo ... 94 2e-20
gi|239741480 PREDICTED: hypothetical protein XP_002342211 [Homo ... 94 2e-20
gi|239740988 PREDICTED: hypothetical protein XP_002342052 [Homo ... 94 2e-20
gi|239740978 PREDICTED: hypothetical protein XP_002344292 [Homo ... 94 2e-20
gi|149363664 septin 8 isoform d [Homo sapiens] 54 3e-08
gi|149363638 septin 8 isoform c [Homo sapiens] 54 3e-08
gi|149363689 septin 8 isoform a [Homo sapiens] 54 3e-08
gi|149363661 septin 8 isoform b [Homo sapiens] 54 3e-08
gi|30795193 septin 10 isoform 2 [Homo sapiens] 53 5e-08
gi|21945064 septin 10 isoform 1 [Homo sapiens] 53 5e-08
gi|8922712 septin 11 [Homo sapiens] 53 6e-08
gi|21361478 septin 6 isoform B [Homo sapiens] 46 6e-06
gi|22035581 septin 6 isoform D [Homo sapiens] 46 6e-06
gi|22035579 septin 6 isoform A [Homo sapiens] 46 6e-06
gi|22035577 septin 6 isoform A [Homo sapiens] 46 6e-06
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 32 0.11
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 32 0.11
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 31 0.24
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 31 0.24
gi|38044112 restin isoform b [Homo sapiens] 31 0.24
gi|4506751 restin isoform a [Homo sapiens] 31 0.24
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 31 0.24
gi|153945715 myosin VC [Homo sapiens] 31 0.24
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 31 0.24
gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo ... 30 0.32
gi|149363632 coiled-coil domain containing 29 [Homo sapiens] 30 0.41
gi|221554526 coiled-coil domain containing 42B [Homo sapiens] 30 0.54
>gi|239742771 PREDICTED: hypothetical protein XP_002342648 [Homo
sapiens]
Length = 81
Score = 162 bits (410), Expect = 5e-41
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MIWLQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHL 60
MIWLQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHL
Sbjct: 1 MIWLQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHL 60
Query: 61 TIWTRQQMLLSKFSKEESEMK 81
TIWTRQQMLLSKFSKEESEMK
Sbjct: 61 TIWTRQQMLLSKFSKEESEMK 81
>gi|153252198 septin 14 [Homo sapiens]
Length = 432
Score = 112 bits (280), Expect = 6e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 59
LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 374 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 429
>gi|169172800 PREDICTED: similar to Putative uncharacterized
protein C20orf69 [Homo sapiens]
Length = 85
Score = 94.0 bits (232), Expect = 2e-20
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 13 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 59
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 47
>gi|239742767 PREDICTED: hypothetical protein XP_002342632 [Homo
sapiens]
Length = 85
Score = 94.0 bits (232), Expect = 2e-20
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 13 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 59
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 47
>gi|239741480 PREDICTED: hypothetical protein XP_002342211 [Homo
sapiens]
Length = 85
Score = 94.0 bits (232), Expect = 2e-20
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 13 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 59
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 47
>gi|239740988 PREDICTED: hypothetical protein XP_002342052 [Homo
sapiens]
Length = 85
Score = 94.0 bits (232), Expect = 2e-20
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 13 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 59
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 47
>gi|239740978 PREDICTED: hypothetical protein XP_002344292 [Homo
sapiens]
Length = 85
Score = 94.0 bits (232), Expect = 2e-20
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 13 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 59
MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH
Sbjct: 1 MIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH 47
>gi|149363664 septin 8 isoform d [Homo sapiens]
Length = 369
Score = 53.5 bits (127), Expect = 3e-08
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KFEHLK + QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 306 LHEKFEHLKRVHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 351
>gi|149363638 septin 8 isoform c [Homo sapiens]
Length = 442
Score = 53.5 bits (127), Expect = 3e-08
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KFEHLK + QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 366 LHEKFEHLKRVHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 411
>gi|149363689 septin 8 isoform a [Homo sapiens]
Length = 483
Score = 53.5 bits (127), Expect = 3e-08
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KFEHLK + QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 366 LHEKFEHLKRVHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 411
>gi|149363661 septin 8 isoform b [Homo sapiens]
Length = 429
Score = 53.5 bits (127), Expect = 3e-08
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KFEHLK + QEE RK+EE++++LE E F + KAA EALQ+Q
Sbjct: 366 LHEKFEHLKRVHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQ 411
>gi|30795193 septin 10 isoform 2 [Homo sapiens]
Length = 431
Score = 53.1 bits (126), Expect = 5e-08
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ----LSTDTKKDK 58
LQ KFEHLK + QEE KLEE+++ LE EII F K KA SE +Q ++ +KDK
Sbjct: 365 LQAKFEHLKRLHQEERMKLEEKRRLLEEEIIAFSKKKATSEIFHSQSFLATGSNLRKDK 423
>gi|21945064 septin 10 isoform 1 [Homo sapiens]
Length = 454
Score = 53.1 bits (126), Expect = 5e-08
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ----LSTDTKKDK 58
LQ KFEHLK + QEE KLEE+++ LE EII F K KA SE +Q ++ +KDK
Sbjct: 388 LQAKFEHLKRLHQEERMKLEEKRRLLEEEIIAFSKKKATSEIFHSQSFLATGSNLRKDK 446
>gi|8922712 septin 11 [Homo sapiens]
Length = 429
Score = 52.8 bits (125), Expect = 6e-08
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQL----STDTKKDK 58
L +KF+ LK QEE +K+E++KK+LE E+ +F K KAA++ LQ+Q + TKKDK
Sbjct: 363 LHEKFDLLKRTHQEEKKKVEDKKKELEEEVNNFQKKKAAAQLLQSQAQQSGAQQTKKDK 421
>gi|21361478 septin 6 isoform B [Homo sapiens]
Length = 434
Score = 46.2 bits (108), Expect = 6e-06
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KF+ LK + Q+E +KLE++KK L+ E+ F + K A+E LQ+Q
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>gi|22035581 septin 6 isoform D [Homo sapiens]
Length = 429
Score = 46.2 bits (108), Expect = 6e-06
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KF+ LK + Q+E +KLE++KK L+ E+ F + K A+E LQ+Q
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>gi|22035579 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 46.2 bits (108), Expect = 6e-06
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KF+ LK + Q+E +KLE++KK L+ E+ F + K A+E LQ+Q
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>gi|22035577 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 46.2 bits (108), Expect = 6e-06
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQ 49
L +KF+ LK + Q+E +KLE++KK L+ E+ F + K A+E LQ+Q
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 5 QDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKK 56
Q+K E + +Q E + KK E++D K KA L+TQ+S+ +K
Sbjct: 1182 QNKMEEVSKLQSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEK 1233
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 6 DKFEHLKMIQQEEI----RKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHLT 61
+KFE++K E+ +KL E +++ E + + ++K E ++ +L+ K ++H
Sbjct: 617 EKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEIRQLKRELENVKAKLAQHVKPEEHEQ 676
Query: 62 IWTRQQMLLSKFSKEESEM 80
+ +R + + K+ +E+
Sbjct: 677 VKSRLEQKSGELGKKITEL 695
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 5 QDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKK 56
Q+K E + +Q E + KK E++D K KA L+TQ+S+ +K
Sbjct: 1195 QNKMEEVSKLQSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEK 1246
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 6 DKFEHLKMIQQEEI----RKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHLT 61
+KFE++K E+ +KL E +++ E + + ++K E ++ +L+ K ++H
Sbjct: 630 EKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEIRQLKRELENVKAKLAQHVKPEEHEQ 689
Query: 62 IWTRQQMLLSKFSKEESEM 80
+ +R + + K+ +E+
Sbjct: 690 VKSRLEQKSGELGKKITEL 708
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 3 WLQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHLTI 62
WLQD K + EE++++EEE+KQ E+ ++ SE + + + D K H
Sbjct: 878 WLQDNLTLRK--RNEELKEVEEERKQHLKEMGQMQVLQMKSEHQKLEENIDNIKRNHNLA 935
Query: 63 WTRQQ 67
RQ+
Sbjct: 936 LGRQK 940
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 3 WLQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHLTI 62
WLQD K + EE++++EEE+KQ E+ ++ SE + + + D K H
Sbjct: 1017 WLQDNLTLRK--RNEELKEVEEERKQHLKEMGQMQVLQMKSEHQKLEENIDNIKRNHNLA 1074
Query: 63 WTRQQ 67
RQ+
Sbjct: 1075 LGRQK 1079
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQL------STDTKKD 57
++D + QQE +K EEEKK+LE ++ D K S +L +T K
Sbjct: 933 IEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKT 992
Query: 58 KHLTIWTRQQMLL 70
KH I Q L
Sbjct: 993 KHEEILQNLQKTL 1005
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQL------STDTKKD 57
++D + QQE +K EEEKK+LE ++ D K S +L +T K
Sbjct: 968 IEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKT 1027
Query: 58 KHLTIWTRQQMLL 70
KH I Q L
Sbjct: 1028 KHEEILQNLQKTL 1040
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 9 EHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHLTIWTRQQM 68
+ + + QE + EE +++ + + K+K EAL T+LS T KDK + +
Sbjct: 814 QDFETLSQETKIQHEELNNRIQTTVTELQKVKMEKEALMTELS--TVKDKLSKVSDSLKN 871
Query: 69 LLSKFSKEESEMK 81
S+F KE + K
Sbjct: 872 SKSEFEKENQKGK 884
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 16/66 (24%)
Query: 4 LQDKFEHLKMIQ------QEEIRKLEEEKKQLEGEI----IDFYKMKAASEAL------Q 47
LQDK EH ++ +E+ LE++ ++LEG+I D ++KA+ E Q
Sbjct: 697 LQDKQEHCSQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVKASKEQALQDLQQQ 756
Query: 48 TQLSTD 53
QL+TD
Sbjct: 757 RQLNTD 762
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 9 EHLKMIQ--QEEIRKLEEEKKQL----EGEIIDFYKMKAASEALQTQLSTDTKKDKHLTI 62
++ K IQ +EEI+ L++EK QL EGE + +KA L Q+ T ++ +K + +
Sbjct: 1021 DYEKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAEVARLSKQVKTISEFEKEIEL 1080
Query: 63 WTRQQMLLSK-FSKEESEMK 81
Q++ + K ++ EM+
Sbjct: 1081 LQAQKIDVEKHVQSQKREMR 1100
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/76 (21%), Positives = 39/76 (51%)
Query: 6 DKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHLTIWTR 65
++ +H + + +EE R+L+ E K + E++ F + ++ + + T + K+ T
Sbjct: 325 EELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQNEELKSRLCTLQKKYDTSQDE 384
Query: 66 QQMLLSKFSKEESEMK 81
Q LL + ++E++
Sbjct: 385 QNELLKMQLQLQTELR 400
>gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo
sapiens]
Length = 183
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLS 51
LQ +F +K +QQ+ KLEE+KK L+ EI++ +K E + +LS
Sbjct: 84 LQQEFLSMKKVQQQ-CEKLEEDKKMLKEEILN---LKTHMENNRVELS 127
>gi|149363632 coiled-coil domain containing 29 [Homo sapiens]
Length = 161
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 4 LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIID 35
LQ +F +K +QQ+ KLEE+KK L+ EI++
Sbjct: 62 LQQEFLSMKKVQQQ-CEKLEEDKKMLKEEILN 92
>gi|221554526 coiled-coil domain containing 42B [Homo sapiens]
Length = 308
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 21 KLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKH---------LTIWTRQQMLLS 71
+LE+++++L+G I F K SEA + + +++H L +WT+ Q L
Sbjct: 69 QLEQKERELKGSFIRFDKFLQDSEARRNRALRRAAEERHQAGRREVEALRLWTQLQELRR 128
Query: 72 KFSKEESEMK 81
+ ++ + +K
Sbjct: 129 EHARLQRRLK 138
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,303
Number of Sequences: 37866
Number of extensions: 94726
Number of successful extensions: 1304
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 316
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.