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Search of human proteins with 239742640
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens] 375 e-104
gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens] 375 e-104
gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens] 375 e-104
gi|10801345 eukaryotic translation initiation factor 3, subunit ... 268 2e-72
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 28 4.4
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 28 4.4
gi|157151767 FKSG83 [Homo sapiens] 28 4.4
gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens] 28 5.7
gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens] 27 7.5
gi|222352168 hypothetical protein LOC389161 [Homo sapiens] 27 9.8
gi|222144244 fibroblast growth factor receptor 2 isoform 9 precu... 27 9.8
gi|222144231 fibroblast growth factor receptor 2 isoform 3 precu... 27 9.8
gi|222144237 fibroblast growth factor receptor 2 isoform 6 precu... 27 9.8
gi|222144235 fibroblast growth factor receptor 2 isoform 5 precu... 27 9.8
gi|222144233 fibroblast growth factor receptor 2 isoform 4 precu... 27 9.8
gi|221316639 fibroblast growth factor receptor 2 isoform 1 precu... 27 9.8
gi|221316638 fibroblast growth factor receptor 2 isoform 2 precu... 27 9.8
>gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens]
Length = 183
Score = 375 bits (963), Expect = e-104
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF
Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
Query: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH
Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA
Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
Query: 181 FFQ 183
FFQ
Sbjct: 181 FFQ 183
>gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens]
Length = 183
Score = 375 bits (963), Expect = e-104
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF
Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
Query: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH
Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA
Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
Query: 181 FFQ 183
FFQ
Sbjct: 181 FFQ 183
>gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens]
Length = 183
Score = 375 bits (963), Expect = e-104
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF
Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
Query: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH
Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA
Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
Query: 181 FFQ 183
FFQ
Sbjct: 181 FFQ 183
>gi|10801345 eukaryotic translation initiation factor 3, subunit 12
[Homo sapiens]
Length = 218
Score = 268 bits (685), Expect = 2e-72
Identities = 148/218 (67%), Positives = 156/218 (71%), Gaps = 35/218 (16%)
Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
M +FEQMRANVG LL+GI+R NPE LATLE YVE QAK+ AYDLEAN VLKLYQ NP F
Sbjct: 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60
Query: 61 FQTTDTAQIQLKALTNLPHTNFT-----------------------------------PS 85
FQTT TAQI LKALTNLPHT+FT +
Sbjct: 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120
Query: 86 LDENVDLLEGITGFEDSVRMCICPVVGITYQHIDHWLLAEMPGYLSDSQLKVWMRKYTWR 145
LDEN+DLLEGITGFEDSVR IC VVGITYQHID WLLAEM G LSDSQLKVWM KY W
Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180
Query: 146 ADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMAFFQ 183
ADES QIFICSQEE+IKPKN VEKIDFDSVSSIMA Q
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218
>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
Length = 1726
Score = 28.1 bits (61), Expect = 4.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 113 ITYQHIDHWLLAEMPGYLSDSQLKVWMR---KYTWRADESQQIFICSQ 157
+T Q +D W + ++ D +L+++ K W+ E +QI +CSQ
Sbjct: 1358 LTMQLVD-WHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQ 1404
>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
Length = 1800
Score = 28.1 bits (61), Expect = 4.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 113 ITYQHIDHWLLAEMPGYLSDSQLKVWMR---KYTWRADESQQIFICSQ 157
+T Q +D W + ++ D +L+++ K W+ E +QI +CSQ
Sbjct: 1358 LTMQLVD-WHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQ 1404
>gi|157151767 FKSG83 [Homo sapiens]
Length = 189
Score = 28.1 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 75 TNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQH 117
TN+ + + S+ EN +LE IT F S IC ++ I Y +
Sbjct: 106 TNVCLSTYISSMYENSLILENITSFVSSSYPIICTLILINYDN 148
>gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]
Length = 502
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 149 SQQIFICSQEENIKPKNPVEKIDFDSVSSIMAF 181
S+ IF C QE+ IK NP D + S+M F
Sbjct: 230 SEPIFHCRQED-IKTSNPFHHDQLDRIFSVMGF 261
>gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens]
Length = 326
Score = 27.3 bits (59), Expect = 7.5
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 92 LLEGIT-GFEDSVRMCICPVVGITYQHIDHWLL-AEMPGYLSDSQLKVWMRKYTWRADES 149
L G+T FE ++ PV +T+ H D W+L A+ GY+ KY W+++ +
Sbjct: 145 LWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYV----------KY-WQSNMN 193
Query: 150 QQIFICSQEENIKPKNPVEKIDFDSVSSIM 179
+ +E I+ + I F V +M
Sbjct: 194 NVKMFQAHKEAIREARFIHNIPFSVVPIVM 223
>gi|222352168 hypothetical protein LOC389161 [Homo sapiens]
Length = 544
Score = 26.9 bits (58), Expect = 9.8
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 15 LQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVFFQTTDTAQIQLKAL 74
LQ + N +K+ E K+T P V ++ S+P FF T +A LK+
Sbjct: 419 LQKHQQQNQKKITATARKKEKLIKNTYLPQVPLPPVSRVGYSHPSFFYATPSADFLLKSS 478
Query: 75 TN--LPHTNFTP 84
+ L H+ TP
Sbjct: 479 FSSFLEHSGKTP 490
>gi|222144244 fibroblast growth factor receptor 2 isoform 9
precursor [Homo sapiens]
Length = 680
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E
Sbjct: 320 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 379
>gi|222144231 fibroblast growth factor receptor 2 isoform 3
precursor [Homo sapiens]
Length = 769
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E
Sbjct: 409 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 468
>gi|222144237 fibroblast growth factor receptor 2 isoform 6
precursor [Homo sapiens]
Length = 706
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E
Sbjct: 293 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 352
>gi|222144235 fibroblast growth factor receptor 2 isoform 5
precursor [Homo sapiens]
Length = 707
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E
Sbjct: 319 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 378
>gi|222144233 fibroblast growth factor receptor 2 isoform 4
precursor [Homo sapiens]
Length = 709
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E
Sbjct: 296 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 355
>gi|221316639 fibroblast growth factor receptor 2 isoform 1
precursor [Homo sapiens]
Length = 821
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E
Sbjct: 408 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 467
>gi|221316638 fibroblast growth factor receptor 2 isoform 2
precursor [Homo sapiens]
Length = 822
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E
Sbjct: 409 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 468
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,647,525
Number of Sequences: 37866
Number of extensions: 272069
Number of successful extensions: 615
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 19
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.