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Search of human proteins with 239742570
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742570 PREDICTED: hypothetical protein XP_002342556 [Homo
sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742570 PREDICTED: hypothetical protein XP_002342556 [Homo ... 192 4e-50
gi|239742560 PREDICTED: hypothetical protein XP_002342555 [Homo ... 191 8e-50
gi|4504223 glucuronidase, beta [Homo sapiens] 118 9e-28
gi|13489095 sialoadhesin precursor [Homo sapiens] 27 3.4
gi|169167243 PREDICTED: similar to myosin regulatory light chain... 27 4.5
gi|88981341 PREDICTED: similar to myosin regulatory light chain ... 27 4.5
gi|51464364 PREDICTED: similar to myosin regulatory light chain ... 27 4.5
gi|239756491 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239745440 PREDICTED: hypothetical protein XP_002343467 [Homo ... 26 5.9
gi|239745437 PREDICTED: hypothetical protein XP_002343466 [Homo ... 26 5.9
gi|239745428 PREDICTED: hypothetical protein XP_002343462 [Homo ... 26 5.9
gi|239745420 PREDICTED: hypothetical protein XP_002343461 [Homo ... 26 5.9
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2... 26 5.9
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1... 26 5.9
gi|223941923 OTU domain containing 1 [Homo sapiens] 25 10.0
>gi|239742570 PREDICTED: hypothetical protein XP_002342556 [Homo
sapiens]
Length = 90
Score = 192 bits (489), Expect = 4e-50
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MVIAHTKALDPSQPVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQ 60
MVIAHTKALDPSQPVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQ
Sbjct: 1 MVIAHTKALDPSQPVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQ 60
Query: 61 FENWCKTSQSHYSERVWSGNACRASPGKRC 90
FENWCKTSQSHYSERVWSGNACRASPGKRC
Sbjct: 61 FENWCKTSQSHYSERVWSGNACRASPGKRC 90
>gi|239742560 PREDICTED: hypothetical protein XP_002342555 [Homo
sapiens]
Length = 90
Score = 191 bits (486), Expect = 8e-50
Identities = 89/90 (98%), Positives = 90/90 (100%)
Query: 1 MVIAHTKALDPSQPVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQ 60
MVIAHTKALDPSQPVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQ
Sbjct: 1 MVIAHTKALDPSQPVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQ 60
Query: 61 FENWCKTSQSHYSERVWSGNACRASPGKRC 90
FENWCKTSQSHYSERVWSGNAC+ASPGKRC
Sbjct: 61 FENWCKTSQSHYSERVWSGNACKASPGKRC 90
>gi|4504223 glucuronidase, beta [Homo sapiens]
Length = 651
Score = 118 bits (296), Expect = 9e-28
Identities = 56/69 (81%), Positives = 61/69 (88%)
Query: 1 MVIAHTKALDPSQPVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQ 60
MVIAHTK+LDPS+PVTFV+NS YAADKGA YVDVI +NSYYSWY +YGHLELIQLQLA Q
Sbjct: 465 MVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQ 524
Query: 61 FENWCKTSQ 69
FENW K Q
Sbjct: 525 FENWYKKYQ 533
>gi|13489095 sialoadhesin precursor [Homo sapiens]
Length = 1709
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 41 YSWYRNY-----GHLELIQLQLAAQFEN---WCKTSQSHYSER 75
YSWY+N+ H ++L LA + + +C+ H SER
Sbjct: 358 YSWYKNHVLLEDAHSHTLRLHLATRADTGFYFCEVQNVHGSER 400
>gi|169167243 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 43 WYRNYGHLELIQLQLAAQFENWCKTSQSHYSERVWSGNACRASPGKR 89
W R G ++ LQ +Q W + S S W G+ R+ GK+
Sbjct: 3 WSRGEGGERVLLLQGLSQGTQWHQNSGHLGSANSWEGSPGRSGAGKK 49
>gi|88981341 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 43 WYRNYGHLELIQLQLAAQFENWCKTSQSHYSERVWSGNACRASPGKR 89
W R G ++ LQ +Q W + S S W G+ R+ GK+
Sbjct: 3 WSRGEGGERVLLLQGLSQGTQWHQNSGHLGSANSWEGSPGRSGAGKK 49
>gi|51464364 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 43 WYRNYGHLELIQLQLAAQFENWCKTSQSHYSERVWSGNACRASPGKR 89
W R G ++ LQ +Q W + S S W G+ R+ GK+
Sbjct: 3 WSRGEGGERVLLLQGLSQGTQWHQNSGHLGSANSWEGSPGRSGAGKK 49
>gi|239756491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 67 TSQSHYSERVWSGNACRASPG 87
T S YS W G+ACR+SPG
Sbjct: 42 TRASEYSMTCW-GSACRSSPG 61
>gi|239745440 PREDICTED: hypothetical protein XP_002343467 [Homo
sapiens]
Length = 144
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 67 TSQSHYSERVWSGNACRASPG 87
T S YS W G+ACR+SPG
Sbjct: 42 TRASEYSMTCW-GSACRSSPG 61
>gi|239745437 PREDICTED: hypothetical protein XP_002343466 [Homo
sapiens]
Length = 144
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 67 TSQSHYSERVWSGNACRASPG 87
T S YS W G+ACR+SPG
Sbjct: 42 TRASEYSMTCW-GSACRSSPG 61
>gi|239745428 PREDICTED: hypothetical protein XP_002343462 [Homo
sapiens]
Length = 144
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 67 TSQSHYSERVWSGNACRASPG 87
T S YS W G+ACR+SPG
Sbjct: 42 TRASEYSMTCW-GSACRSSPG 61
>gi|239745420 PREDICTED: hypothetical protein XP_002343461 [Homo
sapiens]
Length = 144
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 67 TSQSHYSERVWSGNACRASPG 87
T S YS W G+ACR+SPG
Sbjct: 42 TRASEYSMTCW-GSACRSSPG 61
>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
[Homo sapiens]
Length = 1207
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 14 PVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQ 56
PVTF+++ +Y A G D + V + + GHL +LQ
Sbjct: 371 PVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQ 413
>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
[Homo sapiens]
Length = 1288
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 14 PVTFVTNSTYAADKGALYVDVIRVNSYYSWYRNYGHLELIQLQ 56
PVTF+++ +Y A G D + V + + GHL +LQ
Sbjct: 371 PVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQ 413
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 25.4 bits (54), Expect = 10.0
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 33 DVIRVNSYYSWYRNYGHLELI--QLQLAAQFENWCKTSQ 69
D +R + + SW N GH + + +++NWCK +Q
Sbjct: 416 DSLRPSIWLSWLSN-GHYDAVFDHSYPNPEYDNWCKQTQ 453
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,408,947
Number of Sequences: 37866
Number of extensions: 107445
Number of successful extensions: 199
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 15
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.