Guide to the Human Genome
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Name: LOC100287078 Sequence: fasta or formatted (90aa) NCBI GI: 239742570
Description:

PREDICTED: hypothetical protein XP_002342556

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0          9           2
 C cysteine            3.3          3           1
 D aspartate           3.3          3           1
 E glutamate           3.3          3           1
 F phenylalanine       2.2          2           1
 G glycine             4.4          4           1
 H histidine           3.3          3           1
 I isoleucine          3.3          3           1
 K lysine              4.4          4           1
 L leucine             6.7          6           1
 M methionine          1.1          1           1
 N asparagine          5.6          5           1
 P proline             3.3          3           1
 Q glutamine           5.6          5           1
 R arginine            5.6          5           1
 S serine             10.0          9           1
 T threonine           5.6          5           1
 V valine              7.8          7           1
 W tryptophan          3.3          3           1
 Y tyrosine            7.8          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342556 
LOC100287046          0.994   PREDICTED: hypothetical protein XP_002342555 
GUSB                  0.557   glucuronidase, beta 
SIGLEC1               0.012   sialoadhesin precursor 
LOC391722             0.012   PREDICTED: similar to myosin regulatory light chain...
LOC391722             0.012   PREDICTED: similar to myosin regulatory light chain ...
LOC391722             0.012   PREDICTED: similar to myosin regulatory light chain ...
LOC100292200          0.006   PREDICTED: hypothetical protein 
LOC100288408          0.006   PREDICTED: hypothetical protein XP_002343467 
LOC100288368          0.006   PREDICTED: hypothetical protein XP_002343466 
LOC100288191          0.006   PREDICTED: hypothetical protein XP_002343462 
LOC100288162          0.006   PREDICTED: hypothetical protein XP_002343461 
LOC389722             0.006   PREDICTED: hypothetical protein LOC389722 isoform 2...
LOC389722             0.006   PREDICTED: hypothetical protein LOC389722 isoform 1...
OTUD1                 0.000   OTU domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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