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Search of human proteins with 239742454
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
sapiens]
(63 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ... 120 2e-28
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ... 120 2e-28
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ... 120 2e-28
gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand... 90 3e-19
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens] 89 6e-19
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ... 89 6e-19
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ... 89 6e-19
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 79 6e-16
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 79 6e-16
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 79 6e-16
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ... 74 2e-14
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ... 74 2e-14
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ... 74 2e-14
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ... 74 3e-14
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ... 74 3e-14
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ... 74 3e-14
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ... 67 2e-12
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ... 67 2e-12
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ... 67 2e-12
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ... 67 2e-12
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ... 67 2e-12
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ... 67 2e-12
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ... 66 5e-12
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ... 66 5e-12
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ... 66 5e-12
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ... 62 1e-10
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] 62 1e-10
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ... 62 1e-10
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens] 53 5e-08
gi|40254928 solute carrier family 39 (zinc transporter), member ... 26 7.8
>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 63
Score = 120 bits (302), Expect = 2e-28
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI 60
MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI
Sbjct: 1 MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI 60
Query: 61 KNQ 63
KNQ
Sbjct: 61 KNQ 63
>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
sapiens]
Length = 63
Score = 120 bits (302), Expect = 2e-28
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI 60
MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI
Sbjct: 1 MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI 60
Query: 61 KNQ 63
KNQ
Sbjct: 61 KNQ 63
>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
sapiens]
Length = 63
Score = 120 bits (302), Expect = 2e-28
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI 60
MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI
Sbjct: 1 MIILTSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVRRKI 60
Query: 61 KNQ 63
KNQ
Sbjct: 61 KNQ 63
>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
neanderthalensis]
Length = 227
Score = 90.1 bits (222), Expect = 3e-19
Identities = 45/52 (86%), Positives = 48/52 (92%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPI+EELI FHDHAL+IIFLI FLVLY LFLTLTTKL NTSI+DAQEMETV
Sbjct: 13 TSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
Length = 227
Score = 89.4 bits (220), Expect = 6e-19
Identities = 44/52 (84%), Positives = 48/52 (92%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPI+EELI FHDHAL+IIFLI FLVLY LFLTLTTKL NT+I+DAQEMETV
Sbjct: 13 TSPIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQEMETV 64
>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 89.4 bits (220), Expect = 6e-19
Identities = 45/52 (86%), Positives = 47/52 (90%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEELI FHDHALIIIFLI FLVLY LFLTLTTKL NTSI+D QE+ETV
Sbjct: 13 TSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64
>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
sapiens]
Length = 64
Score = 89.4 bits (220), Expect = 6e-19
Identities = 45/52 (86%), Positives = 47/52 (90%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEELI FHDHALIIIFLI FLVLY LFLTLTTKL NTSI+D QE+ETV
Sbjct: 13 TSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64
>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 79.3 bits (194), Expect = 6e-16
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FHDH LIIIFLIS LVLY++ L LTTKL +TS TDAQE+ETV
Sbjct: 13 TSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
sapiens]
Length = 64
Score = 79.3 bits (194), Expect = 6e-16
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FHDH LIIIFLIS LVLY++ L LTTKL +TS TDAQE+ETV
Sbjct: 13 TSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
sapiens]
Length = 64
Score = 79.3 bits (194), Expect = 6e-16
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FHDH LIIIFLIS LVLY++ L LTTKL +TS TDAQE+ETV
Sbjct: 13 TSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 74.3 bits (181), Expect = 2e-14
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FHDHALIIIFLIS LVL ++ L LTTKL +T DAQE+ETV
Sbjct: 13 TSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
sapiens]
Length = 64
Score = 74.3 bits (181), Expect = 2e-14
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FHDHALIIIFLIS LVL ++ L LTTKL +T DAQE+ETV
Sbjct: 13 TSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
sapiens]
Length = 64
Score = 74.3 bits (181), Expect = 2e-14
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FHDHALIIIFLIS LVL ++ L LTTKL +T DAQE+ETV
Sbjct: 13 TSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 73.6 bits (179), Expect = 3e-14
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FH HALIII LIS LVLYV+ L LTTKL +TS DAQE++TV
Sbjct: 13 TSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
sapiens]
Length = 64
Score = 73.6 bits (179), Expect = 3e-14
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FH HALIII LIS LVLYV+ L LTTKL +TS DAQE++TV
Sbjct: 13 TSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
sapiens]
Length = 64
Score = 73.6 bits (179), Expect = 3e-14
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
TSPIIEEL+ FH HALIII LIS LVLYV+ L LTTKL +TS DAQE++TV
Sbjct: 13 TSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 67.4 bits (163), Expect = 2e-12
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 6 SPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
SPIIEEL+ FHDHALIIIFLIS LVLY + L L T L + S AQE+ETV
Sbjct: 14 SPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 8 IIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
I+EEL+ FHDH LIIIFLIS LVLY++ L TTKL +TS DAQE++TV
Sbjct: 16 IMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
sapiens]
Length = 64
Score = 67.4 bits (163), Expect = 2e-12
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 6 SPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
SPIIEEL+ FHDHALIIIFLIS LVLY + L L T L + S AQE+ETV
Sbjct: 14 SPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 8 IIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
I+EEL+ FHDH LIIIFLIS LVLY++ L TTKL +TS DAQE++TV
Sbjct: 16 IMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
sapiens]
Length = 64
Score = 67.4 bits (163), Expect = 2e-12
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 6 SPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
SPIIEEL+ FHDHALIIIFLIS LVLY + L L T L + S AQE+ETV
Sbjct: 14 SPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
sapiens]
Length = 64
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 8 IIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
I+EEL+ FHDH LIIIFLIS LVLY++ L TTKL +TS DAQE++TV
Sbjct: 16 IMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
sapiens]
Length = 53
Score = 66.2 bits (160), Expect = 5e-12
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 7 PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
P +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS AQE+ETV
Sbjct: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
sapiens]
Length = 53
Score = 66.2 bits (160), Expect = 5e-12
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 7 PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
P +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS AQE+ETV
Sbjct: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
sapiens]
Length = 53
Score = 66.2 bits (160), Expect = 5e-12
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 7 PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
P +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS AQE+ETV
Sbjct: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
sapiens]
Length = 415
Score = 62.0 bits (149), Expect = 1e-10
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 9 IEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
+ + I FHDH L+I+FLIS LVLYV+ L LT KL N S DAQE+ETV
Sbjct: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 9 IEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
+ + I FHDH L+I+FLIS LVLYV+ L LT KL N S DAQE+ETV
Sbjct: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
sapiens]
Length = 433
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 9 IEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
+ + I FHDH L+I+FLIS LVLYV+ L LT KL N S DAQE+ETV
Sbjct: 386 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433
>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 53.1 bits (126), Expect = 5e-08
Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 11 ELIAFHDHALIIIFLISFLVLYVLFL---TLTTKLANTSITDAQEMET 55
EL+ FH H L+IIFLIS LV Y++ L LTTKL +TS D QE+ET
Sbjct: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
>gi|40254928 solute carrier family 39 (zinc transporter), member 9
[Homo sapiens]
Length = 307
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 8 IIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETVR 57
++ E HDH + ++ LVL +F+ L ++ N+ + + E R
Sbjct: 91 VVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPEAAR 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.143 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,560,917
Number of Sequences: 37866
Number of extensions: 36148
Number of successful extensions: 239
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 30
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.