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Search of human proteins with 239742036
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742036 PREDICTED: hypothetical protein XP_002342376 [Homo
sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753524 PREDICTED: hypothetical protein [Homo sapiens] 302 8e-83
gi|239748138 PREDICTED: hypothetical protein XP_002346536 [Homo ... 302 8e-83
gi|239742036 PREDICTED: hypothetical protein XP_002342376 [Homo ... 302 8e-83
gi|40806227 zinc finger protein 64 isoform c [Homo sapiens] 31 0.46
gi|40806225 zinc finger protein 64 isoform b [Homo sapiens] 31 0.46
gi|40806223 zinc finger protein 64 isoform a [Homo sapiens] 31 0.46
gi|4826730 FK506 binding protein 12-rapamycin associated protein... 29 1.7
gi|13899309 ribosomal protein S6 kinase-like 1 [Homo sapiens] 28 3.0
gi|85797660 limkain b1 [Homo sapiens] 28 3.0
gi|14211943 lysyl oxidase-like 3 precursor [Homo sapiens] 28 3.9
gi|47578107 delangin isoform B [Homo sapiens] 27 5.0
gi|47578105 delangin isoform A [Homo sapiens] 27 5.0
>gi|239753524 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 302 bits (773), Expect = 8e-83
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA 60
MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA
Sbjct: 1 MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA 60
Query: 61 LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE 120
LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE
Sbjct: 61 LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE 120
Query: 121 PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG 151
PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG
Sbjct: 121 PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG 151
>gi|239748138 PREDICTED: hypothetical protein XP_002346536 [Homo
sapiens]
Length = 151
Score = 302 bits (773), Expect = 8e-83
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA 60
MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA
Sbjct: 1 MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA 60
Query: 61 LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE 120
LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE
Sbjct: 61 LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE 120
Query: 121 PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG 151
PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG
Sbjct: 121 PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG 151
>gi|239742036 PREDICTED: hypothetical protein XP_002342376 [Homo
sapiens]
Length = 151
Score = 302 bits (773), Expect = 8e-83
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA 60
MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA
Sbjct: 1 MVPACSGEEGVLGAQNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPA 60
Query: 61 LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE 120
LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE
Sbjct: 61 LLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGE 120
Query: 121 PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG 151
PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG
Sbjct: 121 PTAIVLVPAEVMPCVQLVTHLHAADPDAQRG 151
>gi|40806227 zinc finger protein 64 isoform c [Homo sapiens]
Length = 679
Score = 30.8 bits (68), Expect = 0.46
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 79 LPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGEPTAIVLVPAEVMP 133
+PLQ S Q PQF++ R+K + +++ A A N P A+V E +P
Sbjct: 480 VPLQPS-QVPQFSEGRVKIIVGHQVPQANTIVQAAAAAVNIVPPALVAQNPEELP 533
>gi|40806225 zinc finger protein 64 isoform b [Homo sapiens]
Length = 627
Score = 30.8 bits (68), Expect = 0.46
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 79 LPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGEPTAIVLVPAEVMP 133
+PLQ S Q PQF++ R+K + +++ A A N P A+V E +P
Sbjct: 428 VPLQPS-QVPQFSEGRVKIIVGHQVPQANTIVQAAAAAVNIVPPALVAQNPEELP 481
>gi|40806223 zinc finger protein 64 isoform a [Homo sapiens]
Length = 681
Score = 30.8 bits (68), Expect = 0.46
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 79 LPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFNGEPTAIVLVPAEVMP 133
+PLQ S Q PQF++ R+K + +++ A A N P A+V E +P
Sbjct: 482 VPLQPS-QVPQFSEGRVKIIVGHQVPQANTIVQAAAAAVNIVPPALVAQNPEELP 535
>gi|4826730 FK506 binding protein 12-rapamycin associated protein 1
[Homo sapiens]
Length = 2549
Score = 28.9 bits (63), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 26 CSMMLMRFSRPNTEHHVQVLETHLRPAVQAGLSPALLAIIDD 67
C ML R P + ++ L L P + GLSPAL A++ D
Sbjct: 485 CISMLARAMGPGIQQDIKEL---LEPMLAVGLSPALTAVLYD 523
>gi|13899309 ribosomal protein S6 kinase-like 1 [Homo sapiens]
Length = 541
Score = 28.1 bits (61), Expect = 3.0
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 43 QVLETHLRPAVQAGLSPALLAIIDDKQGTGVEAVRGLPLQHSFQAPQFAQDRLKQVTSQV 102
++ HL+ + +G SP+ + ++ D G V+ LP H +++RL + V
Sbjct: 112 EIFNCHLQRPLSSGASPSAVQLVQDPATGGTFVVKSLPRCH-----MVSRERLTIIPHGV 166
Query: 103 QAIVQILIEGIAE 115
+ ++L ++E
Sbjct: 167 PYMTKLLRYFVSE 179
>gi|85797660 limkain b1 [Homo sapiens]
Length = 1742
Score = 28.1 bits (61), Expect = 3.0
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 72 GVEAVRGLPLQHSFQAPQFAQDRLKQVTSQVQAIVQILIEGIAEAFN 118
G+ + R L L H Q +F QD LK + S QA Q+++ ++A++
Sbjct: 1161 GMGSKRLLTLTHRAQVKRFTQDLLKLLKS--QASKQVIVREFSQAYH 1205
>gi|14211943 lysyl oxidase-like 3 precursor [Homo sapiens]
Length = 753
Score = 27.7 bits (60), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 39 EHHVQVLETHLRPAVQAGLSP 59
EHH+QV E +RPAV G P
Sbjct: 161 EHHLQVEEVRIRPAVGWGRRP 181
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 27.3 bits (59), Expect = 5.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 118 NGEPTAIVLVPAEVMPCVQLVTHLHAADPDA 148
+GEP I +V A V+ +Q V HL +++ D+
Sbjct: 1481 DGEPMYIQMVTALVLQLIQCVVHLPSSEKDS 1511
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 27.3 bits (59), Expect = 5.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 118 NGEPTAIVLVPAEVMPCVQLVTHLHAADPDA 148
+GEP I +V A V+ +Q V HL +++ D+
Sbjct: 1481 DGEPMYIQMVTALVLQLIQCVVHLPSSEKDS 1511
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,644,536
Number of Sequences: 37866
Number of extensions: 218670
Number of successful extensions: 430
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 12
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.