Search of human proteins with 116268099

Search of human proteins with 116268099

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116268099 hypothetical protein LOC144347 [Homo sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116268099 hypothetical protein LOC144347 [Homo sapiens]            283   4e-77
gi|33186901 hypothetical protein LOC359845 [Homo sapiens]             103   6e-23
gi|18641364 protein tyrosine phosphatase, receptor type, C isofo...    29   1.0  
gi|18641347 protein tyrosine phosphatase, receptor type, C isofo...    29   1.0  
gi|18641362 protein tyrosine phosphatase, receptor type, C isofo...    29   1.0  
gi|10190748 CEGP1 protein [Homo sapiens]                               27   5.0  
gi|239748030 PREDICTED: hypothetical protein XP_002346496 [Homo ...    27   5.0  
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]    27   6.6  
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]           26   8.6  
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]           26   8.6  
gi|114431236 zinc finger protein 462 [Homo sapiens]                    26   8.6  
gi|166197690 neuronal guanine nucleotide exchange factor isoform...    26   8.6  
gi|166197688 neuronal guanine nucleotide exchange factor isoform...    26   8.6  
gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo sa...    26   8.6  

>gi|116268099 hypothetical protein LOC144347 [Homo sapiens]
          Length = 135

 Score =  283 bits (723), Expect = 4e-77
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MRPRMLPVFFGESIKVNPEPTHEIRCNSEVKYASEKHFQDKVFYAPVPTVTAYSETIVAA 60
           MRPRMLPVFFGESIKVNPEPTHEIRCNSEVKYASEKHFQDKVFYAPVPTVTAYSETIVAA
Sbjct: 1   MRPRMLPVFFGESIKVNPEPTHEIRCNSEVKYASEKHFQDKVFYAPVPTVTAYSETIVAA 60

Query: 61  PNCTWRNYRSQLTLEPRPRALRFRSTTIIFPKHARSTFRTTLHCSLGRPSRWFTASVQLQ 120
           PNCTWRNYRSQLTLEPRPRALRFRSTTIIFPKHARSTFRTTLHCSLGRPSRWFTASVQLQ
Sbjct: 61  PNCTWRNYRSQLTLEPRPRALRFRSTTIIFPKHARSTFRTTLHCSLGRPSRWFTASVQLQ 120

Query: 121 LCQDPAPSLLGPATL 135
           LCQDPAPSLLGPATL
Sbjct: 121 LCQDPAPSLLGPATL 135


>gi|33186901 hypothetical protein LOC359845 [Homo sapiens]
          Length = 214

 Score =  103 bits (256), Expect = 6e-23
 Identities = 50/122 (40%), Positives = 76/122 (62%)

Query: 4   RMLPVFFGESIKVNPEPTHEIRCNSEVKYASEKHFQDKVFYAPVPTVTAYSETIVAAPNC 63
           R+ P+ FGE ++ +P P  E+R  S VKY SE+HF D V       V + S+T+   PN 
Sbjct: 84  RLCPLSFGEGVEFDPLPPKEVRYTSLVKYDSERHFIDDVQLPLGLAVASCSQTVTCVPNG 143

Query: 64  TWRNYRSQLTLEPRPRALRFRSTTIIFPKHARSTFRTTLHCSLGRPSRWFTASVQLQLCQ 123
           TWRNY++++  EPR R  RF STTI++PK+ ++ + TTL  +  +  R F +SV+L+  +
Sbjct: 144 TWRNYKAEVRFEPRHRPTRFLSTTIVYPKYPKAVYTTTLDYNCRKTLRRFLSSVELEAAE 203

Query: 124 DP 125
            P
Sbjct: 204 LP 205


>gi|18641364 protein tyrosine phosphatase, receptor type, C isoform
           3 precursor [Homo sapiens]
          Length = 1256

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 8   VFFGESIKV-NPEPTHEIRCNSEVKYASEK 36
           +F  + IK+ N EP HE +C+SE+ Y + K
Sbjct: 298 IFDNKEIKLENLEPEHEYKCDSEILYNNHK 327


>gi|18641347 protein tyrosine phosphatase, receptor type, C isoform
           1 precursor [Homo sapiens]
          Length = 1304

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 8   VFFGESIKV-NPEPTHEIRCNSEVKYASEK 36
           +F  + IK+ N EP HE +C+SE+ Y + K
Sbjct: 346 IFDNKEIKLENLEPEHEYKCDSEILYNNHK 375


>gi|18641362 protein tyrosine phosphatase, receptor type, C isoform
           2 precursor [Homo sapiens]
          Length = 1143

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 8   VFFGESIKV-NPEPTHEIRCNSEVKYASEK 36
           +F  + IK+ N EP HE +C+SE+ Y + K
Sbjct: 185 IFDNKEIKLENLEPEHEYKCDSEILYNNHK 214


>gi|10190748 CEGP1 protein [Homo sapiens]
          Length = 999

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 55  ETIVAAPNCTWRNYRSQLTLEPRPR 79
           E  +  PN T++N   Q+T EP PR
Sbjct: 652 ERCILCPNGTFQNEEGQMTCEPCPR 676


>gi|239748030 PREDICTED: hypothetical protein XP_002346496 [Homo
           sapiens]
          Length = 221

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 13  SIKVNPEPTHEIRCNSEVKYASEKHFQDKVFYAPVPTVTAYSETIVAAPNCTWRNYRSQL 72
           S+ ++P P       + ++     H    +   P P V A S T  A P C + +  S +
Sbjct: 89  SMPLHPRPFVHASSPTALRPCLFTHGPSSMPLHPRPFVHASSPT--ALPPCLFTHGPSSM 146

Query: 73  TLEPRPRALRFRSTTIIFPK---HARSTFRTTLHCSL 106
            L PRP  L   S+T + P+   HA S+   +LH  L
Sbjct: 147 PLHPRP-FLHASSSTSLHPRPFIHASSS--KSLHLRL 180


>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
          Length = 1462

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 11  GESIKVNPEPTHEIRCNSEVKYAS-EKHFQDK 41
           GE + ++  P HE + N EV  A+ E H QD+
Sbjct: 288 GEQVDLSEPPDHEKKTNQEVAAATLEDHAQDE 319


>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
          Length = 1872

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 68  YRSQLTLEPRPRALRFRSTTIIFPKHARSTFRTTLH-CS----LGRPSRWFTASVQLQL 121
           YR     + RPR +R       FP H+ S+ R  L  C+     G  S W+      +L
Sbjct: 812 YRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRL 870


>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
          Length = 1893

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 68  YRSQLTLEPRPRALRFRSTTIIFPKHARSTFRTTLH-CS----LGRPSRWFTASVQLQL 121
           YR     + RPR +R       FP H+ S+ R  L  C+     G  S W+      +L
Sbjct: 833 YRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRL 891


>gi|114431236 zinc finger protein 462 [Homo sapiens]
          Length = 2506

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 7   PVFFGESIKVNPEPTHE-IRCNSEVKYASEKH 37
           P ++G+ I  NP+PT++  +C   V+Y   K+
Sbjct: 90  PGYYGQHIAANPKPTNKFFQCKFCVRYFRSKN 121


>gi|166197690 neuronal guanine nucleotide exchange factor isoform 2
           [Homo sapiens]
          Length = 618

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 26  CNSEVKYASEKHFQDKVFYAPVPTVTAYSETIVAAPNCTWRNYRSQLTLEPRPRALRFRS 85
           C+   +YA++ HF   + Y    T    +   +      +R   +QL L+P+ R L F S
Sbjct: 257 CDIVYRYAAD-HFSVYITYVSNQTYQERTYKQLLQEKAAFRELIAQLELDPKCRGLPFSS 315

Query: 86  TTII 89
             I+
Sbjct: 316 FLIL 319


>gi|166197688 neuronal guanine nucleotide exchange factor isoform 1
           [Homo sapiens]
          Length = 710

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 26  CNSEVKYASEKHFQDKVFYAPVPTVTAYSETIVAAPNCTWRNYRSQLTLEPRPRALRFRS 85
           C+   +YA++ HF   + Y    T    +   +      +R   +QL L+P+ R L F S
Sbjct: 349 CDIVYRYAAD-HFSVYITYVSNQTYQERTYKQLLQEKAAFRELIAQLELDPKCRGLPFSS 407

Query: 86  TTII 89
             I+
Sbjct: 408 FLIL 411


>gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo
           sapiens]
          Length = 1826

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 68  YRSQLTLEPRPRALRFRSTTIIFPKHARSTFRTTLH-CS----LGRPSRWFTASVQLQL 121
           YR     + RPR +R       FP H+ S+ R  L  C+     G  S W+      +L
Sbjct: 831 YRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRL 889


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,842,684
Number of Sequences: 37866
Number of extensions: 247141
Number of successful extensions: 406
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 14
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.