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Search of human proteins with 239741578
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo
sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo ... 230 2e-61
gi|169163903 PREDICTED: hypothetical protein [Homo sapiens] 228 8e-61
gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo ... 228 8e-61
gi|224028248 non-POU domain containing, octamer-binding isoform ... 30 0.41
gi|224028246 non-POU domain containing, octamer-binding isoform ... 30 0.41
gi|224028244 non-POU domain containing, octamer-binding isoform ... 30 0.41
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 30 0.41
gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo s... 30 0.41
gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo sap... 30 0.41
gi|18644730 inhibitor of growth family, member 5 [Homo sapiens] 28 2.0
gi|70887661 hypothetical protein LOC284009 [Homo sapiens] 28 2.0
gi|88759348 ring finger protein 219 [Homo sapiens] 27 2.7
gi|83367077 mucin 16 [Homo sapiens] 26 6.0
>gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo
sapiens]
Length = 113
Score = 230 bits (586), Expect = 2e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV
Sbjct: 1 MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
Query: 61 FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI
Sbjct: 61 FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
>gi|169163903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 228 bits (581), Expect = 8e-61
Identities = 112/113 (99%), Positives = 113/113 (100%)
Query: 1 MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
MQSFLCFIKHFRVVDAAIVE+LLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV
Sbjct: 1 MQSFLCFIKHFRVVDAAIVEHLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
Query: 61 FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI
Sbjct: 61 FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
>gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo
sapiens]
Length = 113
Score = 228 bits (581), Expect = 8e-61
Identities = 112/113 (99%), Positives = 113/113 (100%)
Query: 1 MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
MQSFLCFIKHFRVVDAAIVE+LLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV
Sbjct: 1 MQSFLCFIKHFRVVDAAIVEHLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
Query: 61 FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI
Sbjct: 61 FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
>gi|224028248 non-POU domain containing, octamer-binding isoform 2
[Homo sapiens]
Length = 382
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 38 QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
QQ GF G+ P A ++E+ G + A + + GAM PA AGT + +
Sbjct: 277 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 330
Query: 98 SVRSSLVNTKPT 109
+L T PT
Sbjct: 331 MPDGTLGLTPPT 342
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 38 QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
QQ GF G+ P A ++E+ G + A + + GAM PA AGT + +
Sbjct: 366 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 419
Query: 98 SVRSSLVNTKPT 109
+L T PT
Sbjct: 420 MPDGTLGLTPPT 431
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 38 QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
QQ GF G+ P A ++E+ G + A + + GAM PA AGT + +
Sbjct: 366 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 419
Query: 98 SVRSSLVNTKPT 109
+L T PT
Sbjct: 420 MPDGTLGLTPPT 431
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 38 QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
QQ GF G+ P A ++E+ G + A + + GAM PA AGT + +
Sbjct: 366 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 419
Query: 98 SVRSSLVNTKPT 109
+L T PT
Sbjct: 420 MPDGTLGLTPPT 431
>gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 25/111 (22%)
Query: 21 YLLDDQPKGEGGDVEHVQQR-----------GFAGSHFVSMVIPKAWKKEV------FSG 63
+L +D PK D+E V Q GF G H V ++ + + V F
Sbjct: 17 HLTEDTPK-VNADIEKVNQNQAKRCTVIGGSGFLGQHMVEQLLARGYAVNVFDIQQGFDN 75
Query: 64 PRPVFWAGTVTSHGAMAPARAAAGTLL-------ASNMSLISVRSSLVNTK 107
P+ F+ G + S + PA T+ +SN + R + + TK
Sbjct: 76 PQVRFFLGDLCSRQDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTK 126
>gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 25/111 (22%)
Query: 21 YLLDDQPKGEGGDVEHVQQR-----------GFAGSHFVSMVIPKAWKKEV------FSG 63
+L +D PK D+E V Q GF G H V ++ + + V F
Sbjct: 17 HLTEDTPK-VNADIEKVNQNQAKRCTVIGGSGFLGQHMVEQLLARGYAVNVFDIQQGFDN 75
Query: 64 PRPVFWAGTVTSHGAMAPARAAAGTLL-------ASNMSLISVRSSLVNTK 107
P+ F+ G + S + PA T+ +SN + R + + TK
Sbjct: 76 PQVRFFLGDLCSRQDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTK 126
>gi|18644730 inhibitor of growth family, member 5 [Homo sapiens]
Length = 240
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 1 MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRG 41
MQ++ KH R +DA + + D + K EG D E RG
Sbjct: 87 MQTYEMVDKHIRRLDADLARFEADLKDKMEGSDFESSGGRG 127
>gi|70887661 hypothetical protein LOC284009 [Homo sapiens]
Length = 157
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 28 KGEGGDVEHVQQRGFAGSH---FVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARA 84
KG G EH +R GS F++ IP + + AG+ +SH A P +
Sbjct: 57 KGARGRKEHRLRRSDLGSRPVPFLAQGIPDIVIRLLCLS------AGSASSHQASDPLSS 110
Query: 85 AAGTLLAS-NMSLISVRSS 102
AA TL A + +L+S +SS
Sbjct: 111 AAATLAAELDWALVSQKSS 129
>gi|88759348 ring finger protein 219 [Homo sapiens]
Length = 726
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 57 KKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSS 102
K E FS P+ FW TS+ ++ G +A+++ IS + S
Sbjct: 455 KSECFSSPKTGFWDCCSTSYAQNLDFESSEGNTIANSVGEISSKLS 500
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 87 GTLLASNMSLISVRSSLVNTKPTFP 111
GT++ ++S SV + LV TKPT P
Sbjct: 8651 GTVIYKHLSPSSVLADLVTTKPTSP 8675
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,334,948
Number of Sequences: 37866
Number of extensions: 176396
Number of successful extensions: 365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 13
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.