Guide to the Human Genome
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Search of human proteins with 239741578

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo
sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo ...   230   2e-61
gi|169163903 PREDICTED: hypothetical protein [Homo sapiens]           228   8e-61
gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo ...   228   8e-61
gi|224028248 non-POU domain containing, octamer-binding isoform ...    30   0.41 
gi|224028246 non-POU domain containing, octamer-binding isoform ...    30   0.41 
gi|224028244 non-POU domain containing, octamer-binding isoform ...    30   0.41 
gi|34932414 non-POU domain containing, octamer-binding isoform 1...    30   0.41 
gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo s...    30   0.41 
gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo sap...    30   0.41 
gi|18644730 inhibitor of growth family, member 5 [Homo sapiens]        28   2.0  
gi|70887661 hypothetical protein LOC284009 [Homo sapiens]              28   2.0  
gi|88759348 ring finger protein 219 [Homo sapiens]                     27   2.7  
gi|83367077 mucin 16 [Homo sapiens]                                    26   6.0  

>gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo
           sapiens]
          Length = 113

 Score =  230 bits (586), Expect = 2e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
           MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV
Sbjct: 1   MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60

Query: 61  FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
           FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI
Sbjct: 61  FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113


>gi|169163903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score =  228 bits (581), Expect = 8e-61
 Identities = 112/113 (99%), Positives = 113/113 (100%)

Query: 1   MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
           MQSFLCFIKHFRVVDAAIVE+LLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV
Sbjct: 1   MQSFLCFIKHFRVVDAAIVEHLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60

Query: 61  FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
           FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI
Sbjct: 61  FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113


>gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo
           sapiens]
          Length = 113

 Score =  228 bits (581), Expect = 8e-61
 Identities = 112/113 (99%), Positives = 113/113 (100%)

Query: 1   MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60
           MQSFLCFIKHFRVVDAAIVE+LLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV
Sbjct: 1   MQSFLCFIKHFRVVDAAIVEHLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEV 60

Query: 61  FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113
           FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI
Sbjct: 61  FSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSSLVNTKPTFPQI 113


>gi|224028248 non-POU domain containing, octamer-binding isoform 2
           [Homo sapiens]
          Length = 382

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 38  QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
           QQ GF G+       P A ++E+  G   +  A  + + GAM PA   AGT      + +
Sbjct: 277 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 330

Query: 98  SVRSSLVNTKPT 109
               +L  T PT
Sbjct: 331 MPDGTLGLTPPT 342


>gi|224028246 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 38  QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
           QQ GF G+       P A ++E+  G   +  A  + + GAM PA   AGT      + +
Sbjct: 366 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 419

Query: 98  SVRSSLVNTKPT 109
               +L  T PT
Sbjct: 420 MPDGTLGLTPPT 431


>gi|224028244 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 38  QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
           QQ GF G+       P A ++E+  G   +  A  + + GAM PA   AGT      + +
Sbjct: 366 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 419

Query: 98  SVRSSLVNTKPT 109
               +L  T PT
Sbjct: 420 MPDGTLGLTPPT 431


>gi|34932414 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 38  QQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLI 97
           QQ GF G+       P A ++E+  G   +  A  + + GAM PA   AGT      + +
Sbjct: 366 QQEGFKGT------FPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM 419

Query: 98  SVRSSLVNTKPT 109
               +L  T PT
Sbjct: 420 MPDGTLGLTPPT 431


>gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo
           sapiens]
          Length = 373

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 25/111 (22%)

Query: 21  YLLDDQPKGEGGDVEHVQQR-----------GFAGSHFVSMVIPKAWKKEV------FSG 63
           +L +D PK    D+E V Q            GF G H V  ++ + +   V      F  
Sbjct: 17  HLTEDTPK-VNADIEKVNQNQAKRCTVIGGSGFLGQHMVEQLLARGYAVNVFDIQQGFDN 75

Query: 64  PRPVFWAGTVTSHGAMAPARAAAGTLL-------ASNMSLISVRSSLVNTK 107
           P+  F+ G + S   + PA     T+        +SN   +  R + + TK
Sbjct: 76  PQVRFFLGDLCSRQDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTK 126


>gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo
           sapiens]
          Length = 373

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 25/111 (22%)

Query: 21  YLLDDQPKGEGGDVEHVQQR-----------GFAGSHFVSMVIPKAWKKEV------FSG 63
           +L +D PK    D+E V Q            GF G H V  ++ + +   V      F  
Sbjct: 17  HLTEDTPK-VNADIEKVNQNQAKRCTVIGGSGFLGQHMVEQLLARGYAVNVFDIQQGFDN 75

Query: 64  PRPVFWAGTVTSHGAMAPARAAAGTLL-------ASNMSLISVRSSLVNTK 107
           P+  F+ G + S   + PA     T+        +SN   +  R + + TK
Sbjct: 76  PQVRFFLGDLCSRQDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTK 126


>gi|18644730 inhibitor of growth family, member 5 [Homo sapiens]
          Length = 240

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 1   MQSFLCFIKHFRVVDAAIVEYLLDDQPKGEGGDVEHVQQRG 41
           MQ++    KH R +DA +  +  D + K EG D E    RG
Sbjct: 87  MQTYEMVDKHIRRLDADLARFEADLKDKMEGSDFESSGGRG 127


>gi|70887661 hypothetical protein LOC284009 [Homo sapiens]
          Length = 157

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 28  KGEGGDVEHVQQRGFAGSH---FVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARA 84
           KG  G  EH  +R   GS    F++  IP    + +         AG+ +SH A  P  +
Sbjct: 57  KGARGRKEHRLRRSDLGSRPVPFLAQGIPDIVIRLLCLS------AGSASSHQASDPLSS 110

Query: 85  AAGTLLAS-NMSLISVRSS 102
           AA TL A  + +L+S +SS
Sbjct: 111 AAATLAAELDWALVSQKSS 129


>gi|88759348 ring finger protein 219 [Homo sapiens]
          Length = 726

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 57  KKEVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLASNMSLISVRSS 102
           K E FS P+  FW    TS+       ++ G  +A+++  IS + S
Sbjct: 455 KSECFSSPKTGFWDCCSTSYAQNLDFESSEGNTIANSVGEISSKLS 500


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 87   GTLLASNMSLISVRSSLVNTKPTFP 111
            GT++  ++S  SV + LV TKPT P
Sbjct: 8651 GTVIYKHLSPSSVLADLVTTKPTSP 8675


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,334,948
Number of Sequences: 37866
Number of extensions: 176396
Number of successful extensions: 365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 13
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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