Guide to the Human Genome
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Search of human proteins with 239741569

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741569 PREDICTED: hypothetical protein XP_002342240 [Homo
sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753136 PREDICTED: hypothetical protein [Homo sapiens]           288   7e-79
gi|239747702 PREDICTED: hypothetical protein XP_002348252 [Homo ...   288   7e-79
gi|239741569 PREDICTED: hypothetical protein XP_002342240 [Homo ...   288   7e-79
gi|57165424 cullin 4A isoform 1 [Homo sapiens]                         32   0.16 
gi|11140811 cullin 4A isoform 2 [Homo sapiens]                         32   0.16 
gi|52353298 olfactory receptor, family 8, subfamily J, member 1 ...    28   3.0  
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         27   3.9  
gi|51854213 olfactory receptor, family 8, subfamily J, member 3 ...    27   3.9  
gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]        27   6.7  
gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]        27   6.7  
gi|148762963 armadillo repeat containing 2 [Homo sapiens]              26   8.8  
gi|59710104 plexin A3 [Homo sapiens]                                   26   8.8  
gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo sa...    26   8.8  
gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo sa...    26   8.8  
gi|14249568 hypothetical protein LOC84933 [Homo sapiens]               26   8.8  

>gi|239753136 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score =  288 bits (738), Expect = 7e-79
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
           MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH
Sbjct: 1   MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60

Query: 61  TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
           TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW
Sbjct: 61  TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120

Query: 121 GLFHVDSTCVFCSLFP 136
           GLFHVDSTCVFCSLFP
Sbjct: 121 GLFHVDSTCVFCSLFP 136


>gi|239747702 PREDICTED: hypothetical protein XP_002348252 [Homo
           sapiens]
          Length = 136

 Score =  288 bits (738), Expect = 7e-79
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
           MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH
Sbjct: 1   MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60

Query: 61  TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
           TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW
Sbjct: 61  TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120

Query: 121 GLFHVDSTCVFCSLFP 136
           GLFHVDSTCVFCSLFP
Sbjct: 121 GLFHVDSTCVFCSLFP 136


>gi|239741569 PREDICTED: hypothetical protein XP_002342240 [Homo
           sapiens]
          Length = 136

 Score =  288 bits (738), Expect = 7e-79
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
           MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH
Sbjct: 1   MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60

Query: 61  TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
           TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW
Sbjct: 61  TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120

Query: 121 GLFHVDSTCVFCSLFP 136
           GLFHVDSTCVFCSLFP
Sbjct: 121 GLFHVDSTCVFCSLFP 136


>gi|57165424 cullin 4A isoform 1 [Homo sapiens]
          Length = 759

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 21  FQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSHTSTSLYLQPEACGRA 75
           FQV     + L+ + EG GF  E I + TG ED       +     LQ  ACG+A
Sbjct: 589 FQVSLFQTLVLLMFNEGDGFSFEEIKMATGIED-------SELRRTLQSLACGKA 636


>gi|11140811 cullin 4A isoform 2 [Homo sapiens]
          Length = 659

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 21  FQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSHTSTSLYLQPEACGRA 75
           FQV     + L+ + EG GF  E I + TG ED       +     LQ  ACG+A
Sbjct: 489 FQVSLFQTLVLLMFNEGDGFSFEEIKMATGIED-------SELRRTLQSLACGKA 536


>gi|52353298 olfactory receptor, family 8, subfamily J, member 1
           [Homo sapiens]
          Length = 316

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 76  EYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFWGLFHVDS 127
           E F ++++ +L  ++  PE  LQ P FL+ +     + AGN+G   L  VDS
Sbjct: 4   ENFTRVTEFILTGVSSCPE--LQIPLFLVFLVLYGLTMAGNLGIITLTSVDS 53


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 47   VLTGAEDQTEASSHTSTSLYLQPEA--CGRAEYFPQISDILLIQLAEIPECDLQSPEFLL 104
            +L G      ++S T+  L L+PEA  C +A   P+  ++  +  +E     L  P+ LL
Sbjct: 2527 LLLGPPSVPISASVTNLPLGLRPEAELCAQALASPESLELASVASSETSSLSLVPPKDLL 2586

Query: 105  PV 106
            PV
Sbjct: 2587 PV 2588


>gi|51854213 olfactory receptor, family 8, subfamily J, member 3
           [Homo sapiens]
          Length = 315

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 76  EYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFWGLFHVDS 127
           E F ++++ +L  ++  PE  LQ P FL+ +     + AGN+G   L  VDS
Sbjct: 4   ENFTRVTEFILTGVSSCPE--LQIPLFLVFLVLYVLTMAGNLGIITLTSVDS 53


>gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]
          Length = 1119

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 9   SEDSSSSSYPSCF-QVCYRCDVPL 31
           S+DSSS++Y S F Q+C +C   L
Sbjct: 766 SQDSSSNNYKSIFLQICMKCTAVL 789


>gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]
          Length = 1132

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 9   SEDSSSSSYPSCF-QVCYRCDVPL 31
           S+DSSS++Y S F Q+C +C   L
Sbjct: 766 SQDSSSNNYKSIFLQICMKCTAVL 789


>gi|148762963 armadillo repeat containing 2 [Homo sapiens]
          Length = 867

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 74  RAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEE 108
           RA   P  SD+  +Q   +P+ DLQ  +  + V+E
Sbjct: 232 RASSCPSSSDLSRLQTKAVPKADLQEEDAEIEVDE 266


>gi|59710104 plexin A3 [Homo sapiens]
          Length = 1871

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 41  HHERINVLTGAEDQTEASS------HTSTSLYLQPEACGRAEYFPQISDILLI 87
           HH + + L+GA++    +          + L++     G++EYFP +S   LI
Sbjct: 135 HHRKEHYLSGAQEPDSMAGVIVEQGQGPSKLFVGTAVDGKSEYFPTLSSRKLI 187


>gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo
           sapiens]
          Length = 484

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 23  VCYRCDVPLIFYGEGTG 39
           +CYR  VP+I +G GTG
Sbjct: 84  LCYRQGVPIIPFGTGTG 100


>gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo
           sapiens]
          Length = 507

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 23  VCYRCDVPLIFYGEGTG 39
           +CYR  VP+I +G GTG
Sbjct: 84  LCYRQGVPIIPFGTGTG 100


>gi|14249568 hypothetical protein LOC84933 [Homo sapiens]
          Length = 380

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 39  GFHHERINVLTGAEDQTEASSHTSTSLYLQPEAC 72
           G H E + +    E++   + H +T LYLQ   C
Sbjct: 107 GRHMEALEIAANLENKATNTDHLTTVLYLQLAIC 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,807,702
Number of Sequences: 37866
Number of extensions: 245641
Number of successful extensions: 526
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 15
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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