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Search of human proteins with 239741569
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741569 PREDICTED: hypothetical protein XP_002342240 [Homo
sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753136 PREDICTED: hypothetical protein [Homo sapiens] 288 7e-79
gi|239747702 PREDICTED: hypothetical protein XP_002348252 [Homo ... 288 7e-79
gi|239741569 PREDICTED: hypothetical protein XP_002342240 [Homo ... 288 7e-79
gi|57165424 cullin 4A isoform 1 [Homo sapiens] 32 0.16
gi|11140811 cullin 4A isoform 2 [Homo sapiens] 32 0.16
gi|52353298 olfactory receptor, family 8, subfamily J, member 1 ... 28 3.0
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 27 3.9
gi|51854213 olfactory receptor, family 8, subfamily J, member 3 ... 27 3.9
gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens] 27 6.7
gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens] 27 6.7
gi|148762963 armadillo repeat containing 2 [Homo sapiens] 26 8.8
gi|59710104 plexin A3 [Homo sapiens] 26 8.8
gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo sa... 26 8.8
gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo sa... 26 8.8
gi|14249568 hypothetical protein LOC84933 [Homo sapiens] 26 8.8
>gi|239753136 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 288 bits (738), Expect = 7e-79
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH
Sbjct: 1 MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
Query: 61 TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW
Sbjct: 61 TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
Query: 121 GLFHVDSTCVFCSLFP 136
GLFHVDSTCVFCSLFP
Sbjct: 121 GLFHVDSTCVFCSLFP 136
>gi|239747702 PREDICTED: hypothetical protein XP_002348252 [Homo
sapiens]
Length = 136
Score = 288 bits (738), Expect = 7e-79
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH
Sbjct: 1 MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
Query: 61 TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW
Sbjct: 61 TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
Query: 121 GLFHVDSTCVFCSLFP 136
GLFHVDSTCVFCSLFP
Sbjct: 121 GLFHVDSTCVFCSLFP 136
>gi|239741569 PREDICTED: hypothetical protein XP_002342240 [Homo
sapiens]
Length = 136
Score = 288 bits (738), Expect = 7e-79
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH
Sbjct: 1 MKGREEYFSEDSSSSSYPSCFQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSH 60
Query: 61 TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW
Sbjct: 61 TSTSLYLQPEACGRAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFW 120
Query: 121 GLFHVDSTCVFCSLFP 136
GLFHVDSTCVFCSLFP
Sbjct: 121 GLFHVDSTCVFCSLFP 136
>gi|57165424 cullin 4A isoform 1 [Homo sapiens]
Length = 759
Score = 32.0 bits (71), Expect = 0.16
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 21 FQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSHTSTSLYLQPEACGRA 75
FQV + L+ + EG GF E I + TG ED + LQ ACG+A
Sbjct: 589 FQVSLFQTLVLLMFNEGDGFSFEEIKMATGIED-------SELRRTLQSLACGKA 636
>gi|11140811 cullin 4A isoform 2 [Homo sapiens]
Length = 659
Score = 32.0 bits (71), Expect = 0.16
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 21 FQVCYRCDVPLIFYGEGTGFHHERINVLTGAEDQTEASSHTSTSLYLQPEACGRA 75
FQV + L+ + EG GF E I + TG ED + LQ ACG+A
Sbjct: 489 FQVSLFQTLVLLMFNEGDGFSFEEIKMATGIED-------SELRRTLQSLACGKA 536
>gi|52353298 olfactory receptor, family 8, subfamily J, member 1
[Homo sapiens]
Length = 316
Score = 27.7 bits (60), Expect = 3.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 76 EYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFWGLFHVDS 127
E F ++++ +L ++ PE LQ P FL+ + + AGN+G L VDS
Sbjct: 4 ENFTRVTEFILTGVSSCPE--LQIPLFLVFLVLYGLTMAGNLGIITLTSVDS 53
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 27.3 bits (59), Expect = 3.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 47 VLTGAEDQTEASSHTSTSLYLQPEA--CGRAEYFPQISDILLIQLAEIPECDLQSPEFLL 104
+L G ++S T+ L L+PEA C +A P+ ++ + +E L P+ LL
Sbjct: 2527 LLLGPPSVPISASVTNLPLGLRPEAELCAQALASPESLELASVASSETSSLSLVPPKDLL 2586
Query: 105 PV 106
PV
Sbjct: 2587 PV 2588
>gi|51854213 olfactory receptor, family 8, subfamily J, member 3
[Homo sapiens]
Length = 315
Score = 27.3 bits (59), Expect = 3.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 76 EYFPQISDILLIQLAEIPECDLQSPEFLLPVEEQRYSPAGNVGFWGLFHVDS 127
E F ++++ +L ++ PE LQ P FL+ + + AGN+G L VDS
Sbjct: 4 ENFTRVTEFILTGVSSCPE--LQIPLFLVFLVLYVLTMAGNLGIITLTSVDS 53
>gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]
Length = 1119
Score = 26.6 bits (57), Expect = 6.7
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 9 SEDSSSSSYPSCF-QVCYRCDVPL 31
S+DSSS++Y S F Q+C +C L
Sbjct: 766 SQDSSSNNYKSIFLQICMKCTAVL 789
>gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]
Length = 1132
Score = 26.6 bits (57), Expect = 6.7
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 9 SEDSSSSSYPSCF-QVCYRCDVPL 31
S+DSSS++Y S F Q+C +C L
Sbjct: 766 SQDSSSNNYKSIFLQICMKCTAVL 789
>gi|148762963 armadillo repeat containing 2 [Homo sapiens]
Length = 867
Score = 26.2 bits (56), Expect = 8.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 74 RAEYFPQISDILLIQLAEIPECDLQSPEFLLPVEE 108
RA P SD+ +Q +P+ DLQ + + V+E
Sbjct: 232 RASSCPSSSDLSRLQTKAVPKADLQEEDAEIEVDE 266
>gi|59710104 plexin A3 [Homo sapiens]
Length = 1871
Score = 26.2 bits (56), Expect = 8.8
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 41 HHERINVLTGAEDQTEASS------HTSTSLYLQPEACGRAEYFPQISDILLI 87
HH + + L+GA++ + + L++ G++EYFP +S LI
Sbjct: 135 HHRKEHYLSGAQEPDSMAGVIVEQGQGPSKLFVGTAVDGKSEYFPTLSSRKLI 187
>gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo
sapiens]
Length = 484
Score = 26.2 bits (56), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 23 VCYRCDVPLIFYGEGTG 39
+CYR VP+I +G GTG
Sbjct: 84 LCYRQGVPIIPFGTGTG 100
>gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo
sapiens]
Length = 507
Score = 26.2 bits (56), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 23 VCYRCDVPLIFYGEGTG 39
+CYR VP+I +G GTG
Sbjct: 84 LCYRQGVPIIPFGTGTG 100
>gi|14249568 hypothetical protein LOC84933 [Homo sapiens]
Length = 380
Score = 26.2 bits (56), Expect = 8.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 39 GFHHERINVLTGAEDQTEASSHTSTSLYLQPEAC 72
G H E + + E++ + H +T LYLQ C
Sbjct: 107 GRHMEALEIAANLENKATNTDHLTTVLYLQLAIC 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,807,702
Number of Sequences: 37866
Number of extensions: 245641
Number of successful extensions: 526
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 15
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.