Guide to the Human Genome
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Name: LOC100293947 Sequence: fasta or formatted (136aa) NCBI GI: 239753136
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          6           1
 C cysteine            5.1          7           1
 D aspartate           4.4          6           1
 E glutamate          10.3         14           2
 F phenylalanine       7.4         10           1
 G glycine             6.6          9           1
 H histidine           2.9          4           2
 I isoleucine          4.4          6           1
 K lysine              0.7          1           1
 L leucine             8.8         12           2
 M methionine          0.7          1           1
 N asparagine          1.5          2           1
 P proline             6.6          9           1
 Q glutamine           5.1          7           1
 R arginine            3.7          5           1
 S serine             11.8         16           5
 T threonine           4.4          6           1
 V valine              5.1          7           1
 W tryptophan          0.7          1           1
 Y tyrosine            5.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289915          1.000   PREDICTED: hypothetical protein XP_002348252 
LOC100288882          1.000   PREDICTED: hypothetical protein XP_002342240 
CUL4A                 0.027   cullin 4A isoform 1 
CUL4A                 0.027   cullin 4A isoform 2 
OR8J1                 0.011   olfactory receptor, family 8, subfamily J, member 1 ...
SRCAP                 0.008   Snf2-related CBP activator protein 
OR8J3                 0.008   olfactory receptor, family 8, subfamily J, member 3 ...
ATP11C                0.008   ATPase, class VI, type 11C isoform b 
ATP11C                0.008   ATPase, class VI, type 11C isoform a 
ARMC2                 0.004   armadillo repeat containing 2 
PLXNA3                0.004   plexin A3 
LDHD                  0.004   D-lactate dehydrogenase isoform 2 precursor 
LDHD                  0.004   D-lactate dehydrogenase isoform 1 precursor 
C8orf76               0.004   hypothetical protein LOC84933 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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