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Search of human proteins with 239741490
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo
sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo ... 407 e-114
gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo ... 407 e-114
gi|239753064 PREDICTED: hypothetical protein [Homo sapiens] 403 e-113
gi|239755033 PREDICTED: hypothetical protein XP_002346199 [Homo ... 159 2e-39
gi|239749533 PREDICTED: hypothetical protein XP_002347079 [Homo ... 159 2e-39
gi|239743682 PREDICTED: hypothetical protein XP_002342945 [Homo ... 159 2e-39
gi|239754630 PREDICTED: hypothetical protein [Homo sapiens] 35 0.033
gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo ... 35 0.033
gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo ... 35 0.033
gi|239508925 PREDICTED: hypothetical protein [Homo sapiens] 35 0.033
gi|50345988 ATP synthase, H+ transporting, mitochondrial F1 comp... 30 1.4
gi|4885079 ATP synthase, H+ transporting, mitochondrial F1 compl... 30 1.4
gi|5453619 collectin sub-family member 10 [Homo sapiens] 28 6.9
gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens] 27 9.0
gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens] 27 9.0
gi|239741786 PREDICTED: kappa-actin [Homo sapiens] 27 9.0
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 27 9.0
>gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo
sapiens]
Length = 201
Score = 407 bits (1047), Expect = e-114
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP
Sbjct: 1 MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
Query: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG
Sbjct: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
Query: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL
Sbjct: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
Query: 181 RVAPGWLTRGPRAGSLCGGAA 201
RVAPGWLTRGPRAGSLCGGAA
Sbjct: 181 RVAPGWLTRGPRAGSLCGGAA 201
>gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo
sapiens]
Length = 201
Score = 407 bits (1047), Expect = e-114
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP
Sbjct: 1 MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
Query: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG
Sbjct: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
Query: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL
Sbjct: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
Query: 181 RVAPGWLTRGPRAGSLCGGAA 201
RVAPGWLTRGPRAGSLCGGAA
Sbjct: 181 RVAPGWLTRGPRAGSLCGGAA 201
>gi|239753064 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 403 bits (1036), Expect = e-113
Identities = 199/201 (99%), Positives = 200/201 (99%)
Query: 1 MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP
Sbjct: 1 MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
Query: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG
Sbjct: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
Query: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDAL+S DTTHPLTPL
Sbjct: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALRSGDTTHPLTPL 180
Query: 181 RVAPGWLTRGPRAGSLCGGAA 201
RVAPGWLTRGPRAGSLCGGAA
Sbjct: 181 RVAPGWLTRGPRAGSLCGGAA 201
>gi|239755033 PREDICTED: hypothetical protein XP_002346199 [Homo
sapiens]
Length = 537
Score = 159 bits (402), Expect = 2e-39
Identities = 84/137 (61%), Positives = 98/137 (71%), Gaps = 15/137 (10%)
Query: 41 EAFAVDDGRAGLVVLLLGDP-----HLLEG----VEGQHGLDGHVHGGHVEGLKHDLGHL 91
EA A DG +GDP H G V+GQHGLDGHVHG EGLKHDLGHL
Sbjct: 171 EAVATLDGHT------VGDPVTGVHHGTSGTAKEVQGQHGLDGHVHGWGDEGLKHDLGHL 224
Query: 92 LAVGLGIEGGLGEQGGVLLGSHAKLVVEGVVPDLLHVIPVGDDAVLDRVLQGQDTSLALS 151
LA GLG++GGLG+Q G+LLG+H +L +EGVVPDLLHV+PVG+DA+LD LQGQD SLAL
Sbjct: 225 LAAGLGVQGGLGQQHGMLLGNHMQLPLEGVVPDLLHVVPVGNDAMLDEALQGQDASLALG 284
Query: 152 LVAHVGIFLTHTDHDAL 168
LVAH+G+ TH H AL
Sbjct: 285 LVAHMGVLPTHAHHHAL 301
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 45 VDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLK--HDLGHLLAVGLGIEGGL 102
+DDG AGL++LLL DPHLLEG GQ G DG + V L+ +DL A
Sbjct: 1 MDDG-AGLIILLLADPHLLEG--GQRGQDGAANPHRVLELRRSNDLDLHRA--------- 48
Query: 103 GEQGGVLL 110
G QGG LL
Sbjct: 49 GRQGGDLL 56
>gi|239749533 PREDICTED: hypothetical protein XP_002347079 [Homo
sapiens]
Length = 537
Score = 159 bits (402), Expect = 2e-39
Identities = 84/137 (61%), Positives = 98/137 (71%), Gaps = 15/137 (10%)
Query: 41 EAFAVDDGRAGLVVLLLGDP-----HLLEG----VEGQHGLDGHVHGGHVEGLKHDLGHL 91
EA A DG +GDP H G V+GQHGLDGHVHG EGLKHDLGHL
Sbjct: 171 EAVATLDGHT------VGDPVTGVHHGTSGTAKEVQGQHGLDGHVHGWGDEGLKHDLGHL 224
Query: 92 LAVGLGIEGGLGEQGGVLLGSHAKLVVEGVVPDLLHVIPVGDDAVLDRVLQGQDTSLALS 151
LA GLG++GGLG+Q G+LLG+H +L +EGVVPDLLHV+PVG+DA+LD LQGQD SLAL
Sbjct: 225 LAAGLGVQGGLGQQHGMLLGNHMQLPLEGVVPDLLHVVPVGNDAMLDEALQGQDASLALG 284
Query: 152 LVAHVGIFLTHTDHDAL 168
LVAH+G+ TH H AL
Sbjct: 285 LVAHMGVLPTHAHHHAL 301
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 45 VDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLK--HDLGHLLAVGLGIEGGL 102
+DDG AGL++LLL DPHLLEG GQ G DG + V L+ +DL A
Sbjct: 1 MDDG-AGLIILLLADPHLLEG--GQRGQDGAANPHRVLELRRSNDLDLHRA--------- 48
Query: 103 GEQGGVLL 110
G QGG LL
Sbjct: 49 GRQGGDLL 56
>gi|239743682 PREDICTED: hypothetical protein XP_002342945 [Homo
sapiens]
Length = 537
Score = 159 bits (402), Expect = 2e-39
Identities = 84/137 (61%), Positives = 98/137 (71%), Gaps = 15/137 (10%)
Query: 41 EAFAVDDGRAGLVVLLLGDP-----HLLEG----VEGQHGLDGHVHGGHVEGLKHDLGHL 91
EA A DG +GDP H G V+GQHGLDGHVHG EGLKHDLGHL
Sbjct: 171 EAVATLDGHT------VGDPVTGVHHGTSGTAKEVQGQHGLDGHVHGWGDEGLKHDLGHL 224
Query: 92 LAVGLGIEGGLGEQGGVLLGSHAKLVVEGVVPDLLHVIPVGDDAVLDRVLQGQDTSLALS 151
LA GLG++GGLG+Q G+LLG+H +L +EGVVPDLLHV+PVG+DA+LD LQGQD SLAL
Sbjct: 225 LAAGLGVQGGLGQQHGMLLGNHMQLPLEGVVPDLLHVVPVGNDAMLDEALQGQDASLALG 284
Query: 152 LVAHVGIFLTHTDHDAL 168
LVAH+G+ TH H AL
Sbjct: 285 LVAHMGVLPTHAHHHAL 301
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 45 VDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLK--HDLGHLLAVGLGIEGGL 102
+DDG AGL++LLL DPHLLEG GQ G DG + V L+ +DL A
Sbjct: 1 MDDG-AGLIILLLADPHLLEG--GQRGQDGAANPHRVLELRRSNDLDLHRA--------- 48
Query: 103 GEQGGVLL 110
G QGG LL
Sbjct: 49 GRQGGDLL 56
>gi|239754630 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 35.4 bits (80), Expect = 0.033
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 50 AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
A +VVLL+ P E H G + G VEG+K G V G+ GGL + L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
G H V VVP L V + +G A+LD+ V+Q LA SL + + TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
Query: 165 H 165
H
Sbjct: 229 H 229
>gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo
sapiens]
Length = 377
Score = 35.4 bits (80), Expect = 0.033
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 50 AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
A +VVLL+ P E H G + G VEG+K G V G+ GGL + L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
G H V VVP L V + +G A+LD+ V+Q LA SL + + TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
Query: 165 H 165
H
Sbjct: 229 H 229
>gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo
sapiens]
Length = 377
Score = 35.4 bits (80), Expect = 0.033
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 50 AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
A +VVLL+ P E H G + G VEG+K G V G+ GGL + L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
G H V VVP L V + +G A+LD+ V+Q LA SL + + TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
Query: 165 H 165
H
Sbjct: 229 H 229
>gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 35.4 bits (80), Expect = 0.033
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 50 AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
A +VVLL+ P E H G + G VEG+K G V G+ GGL + L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
G H V VVP L V + +G A+LD+ V+Q LA SL + + TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
Query: 165 H 165
H
Sbjct: 229 H 229
>gi|50345988 ATP synthase, H+ transporting, mitochondrial F1
complex, gamma subunit isoform L (liver) precursor [Homo
sapiens]
Length = 298
Score = 30.0 bits (66), Expect = 1.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIE-GGLGEQ-GGVLLGSHA 114
HLL GV GL G +H + +K ++ L A G + G+G++ G+L +H+
Sbjct: 91 HLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHS 146
>gi|4885079 ATP synthase, H+ transporting, mitochondrial F1 complex,
gamma subunit isoform H (heart) precursor [Homo sapiens]
Length = 297
Score = 30.0 bits (66), Expect = 1.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIE-GGLGEQ-GGVLLGSHA 114
HLL GV GL G +H + +K ++ L A G + G+G++ G+L +H+
Sbjct: 91 HLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHS 146
>gi|5453619 collectin sub-family member 10 [Homo sapiens]
Length = 277
Score = 27.7 bits (60), Expect = 6.9
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 58 GDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVG----LGIEGGLGEQGGVLLGSH 113
GDP G EG+HG G + ++G D+G +G +G +G GE+G LLG
Sbjct: 56 GDP----GEEGKHGKVGRMGPKGIKGELGDMGDRGNIGKTGPIGKKGDKGEKG--LLGIP 109
Query: 114 AKLVVEGVVPD 124
+ G V D
Sbjct: 110 GEKGKAGTVCD 120
>gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens]
Length = 924
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 35 GGGVCLEAFAVDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHV 76
G G+C FA DD + ++G P +EG H + +V
Sbjct: 562 GSGMCKAGFAGDDAPQAVFPSIVGRPRHQGMMEGMHQKESYV 603
>gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens]
Length = 924
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 35 GGGVCLEAFAVDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHV 76
G G+C FA DD + ++G P +EG H + +V
Sbjct: 562 GSGMCKAGFAGDDAPQAVFPSIVGRPRHQGMMEGMHQKESYV 603
>gi|239741786 PREDICTED: kappa-actin [Homo sapiens]
Length = 924
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 35 GGGVCLEAFAVDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHV 76
G G+C FA DD + ++G P +EG H + +V
Sbjct: 562 GSGMCKAGFAGDDAPQAVFPSIVGRPRHQGMMEGMHQKESYV 603
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sapiens]
Length = 1555
Score = 27.3 bits (59), Expect = 9.0
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 57 LGDPHLLEGVEGQHGLDGHVHGGHVE---GLKHDLGHLLAVGLGIEGGLGEQGGVLLGSH 113
LG EG GQ G+ G V+ G++ + + GL IEG LG+ G G H
Sbjct: 976 LGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCH 1035
Query: 114 A 114
A
Sbjct: 1036 A 1036
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.142 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,430,192
Number of Sequences: 37866
Number of extensions: 387494
Number of successful extensions: 904
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 20
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.