Guide to the Human Genome
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Search of human proteins with 239741490

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo
sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo ...   407   e-114
gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo ...   407   e-114
gi|239753064 PREDICTED: hypothetical protein [Homo sapiens]           403   e-113
gi|239755033 PREDICTED: hypothetical protein XP_002346199 [Homo ...   159   2e-39
gi|239749533 PREDICTED: hypothetical protein XP_002347079 [Homo ...   159   2e-39
gi|239743682 PREDICTED: hypothetical protein XP_002342945 [Homo ...   159   2e-39
gi|239754630 PREDICTED: hypothetical protein [Homo sapiens]            35   0.033
gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo ...    35   0.033
gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo ...    35   0.033
gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]            35   0.033
gi|50345988 ATP synthase, H+ transporting, mitochondrial F1 comp...    30   1.4  
gi|4885079 ATP synthase, H+ transporting, mitochondrial F1 compl...    30   1.4  
gi|5453619 collectin sub-family member 10 [Homo sapiens]               28   6.9  
gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens]              27   9.0  
gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens]              27   9.0  
gi|239741786 PREDICTED: kappa-actin [Homo sapiens]                     27   9.0  
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap...    27   9.0  

>gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo
           sapiens]
          Length = 201

 Score =  407 bits (1047), Expect = e-114
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
           MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP
Sbjct: 1   MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60

Query: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
           HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG
Sbjct: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120

Query: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
           VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL
Sbjct: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180

Query: 181 RVAPGWLTRGPRAGSLCGGAA 201
           RVAPGWLTRGPRAGSLCGGAA
Sbjct: 181 RVAPGWLTRGPRAGSLCGGAA 201


>gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo
           sapiens]
          Length = 201

 Score =  407 bits (1047), Expect = e-114
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
           MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP
Sbjct: 1   MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60

Query: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
           HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG
Sbjct: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120

Query: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
           VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL
Sbjct: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180

Query: 181 RVAPGWLTRGPRAGSLCGGAA 201
           RVAPGWLTRGPRAGSLCGGAA
Sbjct: 181 RVAPGWLTRGPRAGSLCGGAA 201


>gi|239753064 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 201

 Score =  403 bits (1036), Expect = e-113
 Identities = 199/201 (99%), Positives = 200/201 (99%)

Query: 1   MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60
           MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP
Sbjct: 1   MAATEVVTKKVTAGWLELSRPPIEKIRRPEKSRAGGGVCLEAFAVDDGRAGLVVLLLGDP 60

Query: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120
           HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG
Sbjct: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVLLGSHAKLVVEG 120

Query: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALQSRDTTHPLTPL 180
           VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDAL+S DTTHPLTPL
Sbjct: 121 VVPDLLHVIPVGDDAVLDRVLQGQDTSLALSLVAHVGIFLTHTDHDALRSGDTTHPLTPL 180

Query: 181 RVAPGWLTRGPRAGSLCGGAA 201
           RVAPGWLTRGPRAGSLCGGAA
Sbjct: 181 RVAPGWLTRGPRAGSLCGGAA 201


>gi|239755033 PREDICTED: hypothetical protein XP_002346199 [Homo
           sapiens]
          Length = 537

 Score =  159 bits (402), Expect = 2e-39
 Identities = 84/137 (61%), Positives = 98/137 (71%), Gaps = 15/137 (10%)

Query: 41  EAFAVDDGRAGLVVLLLGDP-----HLLEG----VEGQHGLDGHVHGGHVEGLKHDLGHL 91
           EA A  DG        +GDP     H   G    V+GQHGLDGHVHG   EGLKHDLGHL
Sbjct: 171 EAVATLDGHT------VGDPVTGVHHGTSGTAKEVQGQHGLDGHVHGWGDEGLKHDLGHL 224

Query: 92  LAVGLGIEGGLGEQGGVLLGSHAKLVVEGVVPDLLHVIPVGDDAVLDRVLQGQDTSLALS 151
           LA GLG++GGLG+Q G+LLG+H +L +EGVVPDLLHV+PVG+DA+LD  LQGQD SLAL 
Sbjct: 225 LAAGLGVQGGLGQQHGMLLGNHMQLPLEGVVPDLLHVVPVGNDAMLDEALQGQDASLALG 284

Query: 152 LVAHVGIFLTHTDHDAL 168
           LVAH+G+  TH  H AL
Sbjct: 285 LVAHMGVLPTHAHHHAL 301



 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 14/68 (20%)

Query: 45  VDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLK--HDLGHLLAVGLGIEGGL 102
           +DDG AGL++LLL DPHLLEG  GQ G DG  +   V  L+  +DL    A         
Sbjct: 1   MDDG-AGLIILLLADPHLLEG--GQRGQDGAANPHRVLELRRSNDLDLHRA--------- 48

Query: 103 GEQGGVLL 110
           G QGG LL
Sbjct: 49  GRQGGDLL 56


>gi|239749533 PREDICTED: hypothetical protein XP_002347079 [Homo
           sapiens]
          Length = 537

 Score =  159 bits (402), Expect = 2e-39
 Identities = 84/137 (61%), Positives = 98/137 (71%), Gaps = 15/137 (10%)

Query: 41  EAFAVDDGRAGLVVLLLGDP-----HLLEG----VEGQHGLDGHVHGGHVEGLKHDLGHL 91
           EA A  DG        +GDP     H   G    V+GQHGLDGHVHG   EGLKHDLGHL
Sbjct: 171 EAVATLDGHT------VGDPVTGVHHGTSGTAKEVQGQHGLDGHVHGWGDEGLKHDLGHL 224

Query: 92  LAVGLGIEGGLGEQGGVLLGSHAKLVVEGVVPDLLHVIPVGDDAVLDRVLQGQDTSLALS 151
           LA GLG++GGLG+Q G+LLG+H +L +EGVVPDLLHV+PVG+DA+LD  LQGQD SLAL 
Sbjct: 225 LAAGLGVQGGLGQQHGMLLGNHMQLPLEGVVPDLLHVVPVGNDAMLDEALQGQDASLALG 284

Query: 152 LVAHVGIFLTHTDHDAL 168
           LVAH+G+  TH  H AL
Sbjct: 285 LVAHMGVLPTHAHHHAL 301



 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 14/68 (20%)

Query: 45  VDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLK--HDLGHLLAVGLGIEGGL 102
           +DDG AGL++LLL DPHLLEG  GQ G DG  +   V  L+  +DL    A         
Sbjct: 1   MDDG-AGLIILLLADPHLLEG--GQRGQDGAANPHRVLELRRSNDLDLHRA--------- 48

Query: 103 GEQGGVLL 110
           G QGG LL
Sbjct: 49  GRQGGDLL 56


>gi|239743682 PREDICTED: hypothetical protein XP_002342945 [Homo
           sapiens]
          Length = 537

 Score =  159 bits (402), Expect = 2e-39
 Identities = 84/137 (61%), Positives = 98/137 (71%), Gaps = 15/137 (10%)

Query: 41  EAFAVDDGRAGLVVLLLGDP-----HLLEG----VEGQHGLDGHVHGGHVEGLKHDLGHL 91
           EA A  DG        +GDP     H   G    V+GQHGLDGHVHG   EGLKHDLGHL
Sbjct: 171 EAVATLDGHT------VGDPVTGVHHGTSGTAKEVQGQHGLDGHVHGWGDEGLKHDLGHL 224

Query: 92  LAVGLGIEGGLGEQGGVLLGSHAKLVVEGVVPDLLHVIPVGDDAVLDRVLQGQDTSLALS 151
           LA GLG++GGLG+Q G+LLG+H +L +EGVVPDLLHV+PVG+DA+LD  LQGQD SLAL 
Sbjct: 225 LAAGLGVQGGLGQQHGMLLGNHMQLPLEGVVPDLLHVVPVGNDAMLDEALQGQDASLALG 284

Query: 152 LVAHVGIFLTHTDHDAL 168
           LVAH+G+  TH  H AL
Sbjct: 285 LVAHMGVLPTHAHHHAL 301



 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 14/68 (20%)

Query: 45  VDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLK--HDLGHLLAVGLGIEGGL 102
           +DDG AGL++LLL DPHLLEG  GQ G DG  +   V  L+  +DL    A         
Sbjct: 1   MDDG-AGLIILLLADPHLLEG--GQRGQDGAANPHRVLELRRSNDLDLHRA--------- 48

Query: 103 GEQGGVLL 110
           G QGG LL
Sbjct: 49  GRQGGDLL 56


>gi|239754630 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 377

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 50  AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
           A +VVLL+  P      E  H   G + G  VEG+K   G    V  G+ GGL  +   L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169

Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
            G H   V   VVP  L V    + +G  A+LD+ V+Q     LA SL   + +    TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228

Query: 165 H 165
           H
Sbjct: 229 H 229


>gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo
           sapiens]
          Length = 377

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 50  AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
           A +VVLL+  P      E  H   G + G  VEG+K   G    V  G+ GGL  +   L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169

Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
            G H   V   VVP  L V    + +G  A+LD+ V+Q     LA SL   + +    TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228

Query: 165 H 165
           H
Sbjct: 229 H 229


>gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo
           sapiens]
          Length = 377

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 50  AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
           A +VVLL+  P      E  H   G + G  VEG+K   G    V  G+ GGL  +   L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169

Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
            G H   V   VVP  L V    + +G  A+LD+ V+Q     LA SL   + +    TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228

Query: 165 H 165
           H
Sbjct: 229 H 229


>gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 377

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 50  AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
           A +VVLL+  P      E  H   G + G  VEG+K   G    V  G+ GGL  +   L
Sbjct: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169

Query: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
            G H   V   VVP  L V    + +G  A+LD+ V+Q     LA SL   + +    TD
Sbjct: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228

Query: 165 H 165
           H
Sbjct: 229 H 229


>gi|50345988 ATP synthase, H+ transporting, mitochondrial F1
           complex, gamma subunit isoform L (liver) precursor [Homo
           sapiens]
          Length = 298

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIE-GGLGEQ-GGVLLGSHA 114
           HLL GV    GL G +H    + +K ++  L A G  +   G+G++  G+L  +H+
Sbjct: 91  HLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHS 146


>gi|4885079 ATP synthase, H+ transporting, mitochondrial F1 complex,
           gamma subunit isoform H (heart) precursor [Homo sapiens]
          Length = 297

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 61  HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIE-GGLGEQ-GGVLLGSHA 114
           HLL GV    GL G +H    + +K ++  L A G  +   G+G++  G+L  +H+
Sbjct: 91  HLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHS 146


>gi|5453619 collectin sub-family member 10 [Homo sapiens]
          Length = 277

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 58  GDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVG----LGIEGGLGEQGGVLLGSH 113
           GDP    G EG+HG  G +    ++G   D+G    +G    +G +G  GE+G  LLG  
Sbjct: 56  GDP----GEEGKHGKVGRMGPKGIKGELGDMGDRGNIGKTGPIGKKGDKGEKG--LLGIP 109

Query: 114 AKLVVEGVVPD 124
            +    G V D
Sbjct: 110 GEKGKAGTVCD 120


>gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens]
          Length = 924

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 35  GGGVCLEAFAVDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHV 76
           G G+C   FA DD    +   ++G P     +EG H  + +V
Sbjct: 562 GSGMCKAGFAGDDAPQAVFPSIVGRPRHQGMMEGMHQKESYV 603


>gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens]
          Length = 924

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 35  GGGVCLEAFAVDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHV 76
           G G+C   FA DD    +   ++G P     +EG H  + +V
Sbjct: 562 GSGMCKAGFAGDDAPQAVFPSIVGRPRHQGMMEGMHQKESYV 603


>gi|239741786 PREDICTED: kappa-actin [Homo sapiens]
          Length = 924

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 35  GGGVCLEAFAVDDGRAGLVVLLLGDPHLLEGVEGQHGLDGHV 76
           G G+C   FA DD    +   ++G P     +EG H  + +V
Sbjct: 562 GSGMCKAGFAGDDAPQAVFPSIVGRPRHQGMMEGMHQKESYV 603


>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sapiens]
          Length = 1555

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 57   LGDPHLLEGVEGQHGLDGHVHGGHVE---GLKHDLGHLLAVGLGIEGGLGEQGGVLLGSH 113
            LG     EG  GQ G+     G  V+   G++ +   +   GL IEG LG+ G    G H
Sbjct: 976  LGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCH 1035

Query: 114  A 114
            A
Sbjct: 1036 A 1036


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.142    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,430,192
Number of Sequences: 37866
Number of extensions: 387494
Number of successful extensions: 904
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 20
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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