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Search of human proteins with 239740896
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740896 PREDICTED: hypothetical protein XP_002344079 [Homo
sapiens]
(64 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740896 PREDICTED: hypothetical protein XP_002344079 [Homo ... 142 6e-35
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 30 0.54
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 30 0.54
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 30 0.54
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 30 0.54
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 30 0.54
gi|41406097 dishevelled 3 [Homo sapiens] 29 0.71
gi|7662126 signal-induced proliferation-associated 1 like 1 [Hom... 29 0.71
gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens] 29 0.92
gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens] 29 0.92
gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo ... 28 2.1
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 28 2.1
gi|239755989 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239750521 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239744816 PREDICTED: hypothetical protein XP_002343280 [Homo ... 27 2.7
gi|169165669 PREDICTED: similar to high-mobility group nucleosom... 27 4.6
gi|113415254 PREDICTED: similar to high-mobility group nucleosom... 27 4.6
gi|113414676 PREDICTED: similar to high-mobility group nucleosom... 27 4.6
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 27 4.6
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 27 4.6
gi|53832005 calcium channel, voltage-dependent, R type, alpha 1E... 27 4.6
gi|147903292 nuclear localized factor 1 [Homo sapiens] 27 4.6
gi|239752515 PREDICTED: similar to double homeobox, 4 [Homo sapi... 26 6.0
gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo s... 26 6.0
gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo s... 26 6.0
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 26 6.0
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 26 6.0
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 26 6.0
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 26 6.0
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 26 6.0
>gi|239740896 PREDICTED: hypothetical protein XP_002344079 [Homo
sapiens]
Length = 64
Score = 142 bits (358), Expect = 6e-35
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MKDYIRQPDAGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSH 60
MKDYIRQPDAGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSH
Sbjct: 1 MKDYIRQPDAGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSH 60
Query: 61 GSHS 64
GSHS
Sbjct: 61 GSHS 64
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 10 AGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSHGSHS 64
AG + W G R Q R +PP P P P + P+G G GS +
Sbjct: 79 AGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP-PSALPRGGRAARAGGPGSRA 132
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 10 AGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSHGSHS 64
AG + W G R Q R +PP P P P + P+G G GS +
Sbjct: 62 AGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP-PSALPRGGRAARAGGPGSRA 115
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 10 AGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSHGSHS 64
AG + W G R Q R +PP P P P + P+G G GS +
Sbjct: 70 AGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP-PSALPRGGRAARAGGPGSRA 123
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 10 AGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSHGSHS 64
AG + W G R Q R +PP P P P + P+G G GS +
Sbjct: 62 AGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP-PSALPRGGRAARAGGPGSRA 115
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 10 AGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSHGSHS 64
AG + W G R Q R +PP P P P + P+G G GS +
Sbjct: 70 AGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP-PSALPRGGRAARAGGPGSRA 123
>gi|41406097 dishevelled 3 [Homo sapiens]
Length = 716
Score = 29.3 bits (64), Expect = 0.71
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 6 RQPDAGFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKKMEGSHGSH 63
+ P AG DS+ GS ++ +HT RS SLR P P RS P E SH SH
Sbjct: 589 KDPKAG--DSKSGGSGSESDHTTRS--SLR-GPRERAPSERSGPAAS----EHSHRSH 637
>gi|7662126 signal-induced proliferation-associated 1 like 1 [Homo
sapiens]
Length = 1804
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 11 GFCDSRKRGSWAQGE--HTRRSRQSLRDSPPTPNPLPRSHPKGDFKKM 56
GF D+RKR E HTR R S RD +P P +S + D KK+
Sbjct: 1498 GFMDTRKRHQSDGNEIAHTRL-RASTRDLRASPKPTSKSTIEEDLKKL 1544
>gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]
Length = 1168
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 15 SRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPK 50
SR+RG+ A G T R LRD+ P P+P P P+
Sbjct: 28 SRRRGTRAGGFCTPRYMSCLRDAEP-PSPTPAGPPR 62
>gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens]
Length = 1115
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 15 SRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPK 50
SR+RG+ A G T R LRD+ P P+P P P+
Sbjct: 28 SRRRGTRAGGFCTPRYMSCLRDAEP-PSPTPAGPPR 62
>gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo
sapiens]
Length = 215
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 15 SRKRGSWAQGEHTRRSRQSLRDSPPTPNPLP 45
S +G+ + G H SR SL S P P LP
Sbjct: 42 SHSKGACSDGSHEDMSRSSLISSSPNPLTLP 72
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 22 AQGEHTRRSRQ----SLRDSPPTPNPLPRSHPK 50
A+G+H RR+R+ R PP P P PR K
Sbjct: 88 ARGKHLRRTRRRRTLGRRCRPPAPRPRPRPRRK 120
>gi|239755989 PREDICTED: hypothetical protein [Homo sapiens]
Length = 53
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 19 GSWAQGEHT--RRSRQSLRDSPPTPNPLPRSHPK 50
G QG HT RRSR+ R P PLPR+ +
Sbjct: 16 GDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARAR 49
>gi|239750521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 53
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 19 GSWAQGEHT--RRSRQSLRDSPPTPNPLPRSHPK 50
G QG HT RRSR+ R P PLPR+ +
Sbjct: 16 GDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARAR 49
>gi|239744816 PREDICTED: hypothetical protein XP_002343280 [Homo
sapiens]
Length = 53
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 19 GSWAQGEHT--RRSRQSLRDSPPTPNPLPRSHPK 50
G QG HT RRSR+ R P PLPR+ +
Sbjct: 16 GDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARAR 49
>gi|169165669 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 14 DSRKRGSWAQGEHTRRS-RQSLRDSPPTPNPLPRSHP--KGDFKKMEGSHG 61
D+++ + + E RRS R S + +PP P P P+ P KG+ K +G G
Sbjct: 9 DTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGE-KVPKGKKG 58
>gi|113415254 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 14 DSRKRGSWAQGEHTRRS-RQSLRDSPPTPNPLPRSHP--KGDFKKMEGSHG 61
D+++ + + E RRS R S + +PP P P P+ P KG+ K +G G
Sbjct: 9 DTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGE-KVPKGKKG 58
>gi|113414676 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 14 DSRKRGSWAQGEHTRRS-RQSLRDSPPTPNPLPRSHP--KGDFKKMEGSHG 61
D+++ + + E RRS R S + +PP P P P+ P KG+ K +G G
Sbjct: 9 DTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGE-KVPKGKKG 58
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 23 QGEHTRRSRQSLRDSPPTP---NPLPRSHPK 50
QG+ RSR S SP +P PR HP+
Sbjct: 636 QGQRRHRSRASAMSSPSSPGLGRVAPRGHPR 666
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 QPDAGFCDSRKRGSWAQGEHTRRSRQSLRDSPP 39
QP+ G +R RGSWAQ T S SL D P
Sbjct: 548 QPEWGN-PNRDRGSWAQPVDTGVSEASLGDGEP 579
>gi|53832005 calcium channel, voltage-dependent, R type, alpha 1E
subunit [Homo sapiens]
Length = 2270
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 KDYIRQPDAGFCDSRKRGSWAQGE--HTRRSRQSLRDSPPTPN 42
+ ++ PD C+S +RG+ A E R+SR TPN
Sbjct: 2046 RKHLLSPDVSRCNSEERGTQADWESPERRQSRSPSEGRSQTPN 2088
>gi|147903292 nuclear localized factor 1 [Homo sapiens]
Length = 369
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 11 GFCDSRKRGSWAQGEHTRRSRQSLRDSPPTPNPLPRSHPKG 51
GFC + + HTRR L PP P P R+H G
Sbjct: 104 GFC------ALLESPHTRRKESLLLGGPPAPRP--RAHTYG 136
>gi|239752515 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 479
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 21 WAQGEHTRRSRQSLRDSPPTP 41
W Q E +R+ RQ RDS P P
Sbjct: 123 WFQNERSRQLRQHRRDSRPWP 143
>gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 16 RKRGSWAQGEHTRRSRQSLRDSPPTPNPLPR--SHPKGDFKKMEGSHGS 62
R G R S + PPTP LPR +G K++ G+ GS
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQGPVKEVPGTKGS 109
>gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 16 RKRGSWAQGEHTRRSRQSLRDSPPTPNPLPR--SHPKGDFKKMEGSHGS 62
R G R S + PPTP LPR +G K++ G+ GS
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQGPVKEVPGTKGS 109
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 21 WAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKK 55
W Q E +R+ RQ R+S P P R P+G K+
Sbjct: 127 WFQNERSRQLRQHRRESRPWPG--RRGPPEGRRKR 159
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 21 WAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKK 55
W Q E +R+ RQ R+S P P R P+G K+
Sbjct: 127 WFQNERSRQLRQHRRESRPWPG--RRGPPEGRRKR 159
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 21 WAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKK 55
W Q E +R+ RQ R+S P P R P+G K+
Sbjct: 127 WFQNERSRQLRQHRRESRPWPG--RRGPPEGRRKR 159
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 21 WAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKK 55
W Q E +R+ RQ R+S P P R P+G K+
Sbjct: 127 WFQNERSRQLRQHRRESRPWPG--RRGPPEGRRKR 159
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 21 WAQGEHTRRSRQSLRDSPPTPNPLPRSHPKGDFKK 55
W Q E +R+ RQ R+S P P R P+G K+
Sbjct: 127 WFQNERSRQLRQHRRESRPWPG--RRGPPEGRRKR 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,516,366
Number of Sequences: 37866
Number of extensions: 167494
Number of successful extensions: 831
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 60
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.