Search of human proteins with 239582761

Search of human proteins with 239582761

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239582761 endoplasmic reticulum oxidoreductin 1-Lbeta [Homo
sapiens]
         (467 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239582761 endoplasmic reticulum oxidoreductin 1-Lbeta [Homo s...   964   0.0  
gi|7657069 ERO1-like [Homo sapiens]                                   605   e-173
gi|157743252 pecanex-like 3 [Homo sapiens]                             30   3.6  
gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1 p...    30   6.1  
gi|125987603 cleavage and polyadenylation specific factor 4, 30k...    30   6.1  
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa...    30   6.1  
gi|55770906 XPA binding protein 2 [Homo sapiens]                       30   6.1  
gi|18641364 protein tyrosine phosphatase, receptor type, C isofo...    29   8.0  
gi|18641347 protein tyrosine phosphatase, receptor type, C isofo...    29   8.0  
gi|18641362 protein tyrosine phosphatase, receptor type, C isofo...    29   8.0  
gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapi...    29   8.0  

>gi|239582761 endoplasmic reticulum oxidoreductin 1-Lbeta [Homo
           sapiens]
          Length = 467

 Score =  964 bits (2493), Expect = 0.0
 Identities = 467/467 (100%), Positives = 467/467 (100%)

Query: 1   MSQGVRRAGAGQGVAAAVQLLVTLSFLRSVVEAQVTGVLDDCLCDIDSIDNFNTYKIFPK 60
           MSQGVRRAGAGQGVAAAVQLLVTLSFLRSVVEAQVTGVLDDCLCDIDSIDNFNTYKIFPK
Sbjct: 1   MSQGVRRAGAGQGVAAAVQLLVTLSFLRSVVEAQVTGVLDDCLCDIDSIDNFNTYKIFPK 60

Query: 61  IKKLQERDYFRYYKVNLKRPCPFWAEDGHCSIKDCHVEPCPESKIPVGIKAGHSNKYLKM 120
           IKKLQERDYFRYYKVNLKRPCPFWAEDGHCSIKDCHVEPCPESKIPVGIKAGHSNKYLKM
Sbjct: 61  IKKLQERDYFRYYKVNLKRPCPFWAEDGHCSIKDCHVEPCPESKIPVGIKAGHSNKYLKM 120

Query: 121 ANNTKELEDCEQANKLGAINSTLSNQSKEAFIDWARYDDSRDHFCELDDERSPAAQYVDL 180
           ANNTKELEDCEQANKLGAINSTLSNQSKEAFIDWARYDDSRDHFCELDDERSPAAQYVDL
Sbjct: 121 ANNTKELEDCEQANKLGAINSTLSNQSKEAFIDWARYDDSRDHFCELDDERSPAAQYVDL 180

Query: 181 LLNPERYTGYKGTSAWRVWNSIYEENCFKPRSVYRPLNPLAPSRGEDDGESFYTWLEGLC 240
           LLNPERYTGYKGTSAWRVWNSIYEENCFKPRSVYRPLNPLAPSRGEDDGESFYTWLEGLC
Sbjct: 181 LLNPERYTGYKGTSAWRVWNSIYEENCFKPRSVYRPLNPLAPSRGEDDGESFYTWLEGLC 240

Query: 241 LEKRVFYKLISGLHASINLHLCANYLLEETWGKPSWGPNIKEFKHRFDPVETKGEGPRRL 300
           LEKRVFYKLISGLHASINLHLCANYLLEETWGKPSWGPNIKEFKHRFDPVETKGEGPRRL
Sbjct: 241 LEKRVFYKLISGLHASINLHLCANYLLEETWGKPSWGPNIKEFKHRFDPVETKGEGPRRL 300

Query: 301 KNLYFLYLIELRALSKVAPYFERSIVDLYTGNAEEDADTKTLLLNIFQDTKSFPMHFDEK 360
           KNLYFLYLIELRALSKVAPYFERSIVDLYTGNAEEDADTKTLLLNIFQDTKSFPMHFDEK
Sbjct: 301 KNLYFLYLIELRALSKVAPYFERSIVDLYTGNAEEDADTKTLLLNIFQDTKSFPMHFDEK 360

Query: 361 SMFAGDKKGAKSLKEEFRLHFKNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFSEKEI 420
           SMFAGDKKGAKSLKEEFRLHFKNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFSEKEI
Sbjct: 361 SMFAGDKKGAKSLKEEFRLHFKNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFSEKEI 420

Query: 421 QKLPENSPSKGFQLTRQEIVALLNAFGRLSTSIRDLQNFKVLLQHSR 467
           QKLPENSPSKGFQLTRQEIVALLNAFGRLSTSIRDLQNFKVLLQHSR
Sbjct: 421 QKLPENSPSKGFQLTRQEIVALLNAFGRLSTSIRDLQNFKVLLQHSR 467


>gi|7657069 ERO1-like [Homo sapiens]
          Length = 468

 Score =  605 bits (1559), Expect = e-173
 Identities = 280/432 (64%), Positives = 347/432 (80%), Gaps = 3/432 (0%)

Query: 34  QVTGVLDDCLCDIDSIDNFNTYKIFPKIKKLQERDYFRYYKVNLKRPCPFWAEDGHCSIK 93
           QV+G LDDC CD+++ID FN Y++FP+++KL E DYFRYYKVNLKRPCPFW +   C  +
Sbjct: 38  QVSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRR 97

Query: 94  DCHVEPCPESKIPVGIKAGHSNKYLKMANNTKELEDCEQANKLGAINSTLSNQSKEAFID 153
           DC V+PC   ++P GIK+  S KY + ANN   +E+CEQA +LGA++ +LS ++++A + 
Sbjct: 98  DCAVKPCQSDEVPDGIKSA-SYKYSEEANNL--IEECEQAERLGAVDESLSEETQKAVLQ 154

Query: 154 WARYDDSRDHFCELDDERSPAAQYVDLLLNPERYTGYKGTSAWRVWNSIYEENCFKPRSV 213
           W ++DDS D+FCE DD +SP A+YVDLLLNPERYTGYKG  AW++WN IYEENCFKP+++
Sbjct: 155 WTKHDDSSDNFCEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTI 214

Query: 214 YRPLNPLAPSRGEDDGESFYTWLEGLCLEKRVFYKLISGLHASINLHLCANYLLEETWGK 273
            RPLNPLA  +G  +  +FY+WLEGLC+EKR FY+LISGLHASIN+HL A YLL+ETW +
Sbjct: 215 KRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLE 274

Query: 274 PSWGPNIKEFKHRFDPVETKGEGPRRLKNLYFLYLIELRALSKVAPYFERSIVDLYTGNA 333
             WG NI EF+ RFD + T+GEGPRRLKNLYFLYLIELRALSKV P+FER    L+TGN 
Sbjct: 275 KKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNK 334

Query: 334 EEDADTKTLLLNIFQDTKSFPMHFDEKSMFAGDKKGAKSLKEEFRLHFKNISRIMDCVGC 393
            +D + K LLL I  + KSFP+HFDE S FAGDKK A  LKE+FRLHF+NISRIMDCVGC
Sbjct: 335 IQDEENKMLLLEILHEIKSFPLHFDENSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGC 394

Query: 394 DKCRLWGKLQTQGLGTALKILFSEKEIQKLPENSPSKGFQLTRQEIVALLNAFGRLSTSI 453
            KCRLWGKLQTQGLGTALKILFSEK I  +PE+ PS  F LTRQEIV+L NAFGR+STS+
Sbjct: 395 FKCRLWGKLQTQGLGTALKILFSEKLIANMPESGPSYEFHLTRQEIVSLFNAFGRISTSV 454

Query: 454 RDLQNFKVLLQH 465
           ++L+NF+ LLQ+
Sbjct: 455 KELENFRNLLQN 466


>gi|157743252 pecanex-like 3 [Homo sapiens]
          Length = 2034

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 161  RDHFCELDDERSPAAQYVDLLLNPERYT-GYKGTSAWR 197
            +DHF   D+   PAA Y  +  N ER    ++G  AWR
Sbjct: 1651 QDHFTSPDEYEEPAALYDAIAANEERLVISHEGDPAWR 1688


>gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1
            precursor [Homo sapiens]
          Length = 2315

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 101  PESKIPVGIKAGHSNKYLKMANNTKELEDCEQANKLGAINSTL-SNQSKEAFIDWARYDD 159
            P+    +   +G + ++  +    +E++ C     + A +S    N+ K  +I+   YD 
Sbjct: 1705 PKHVADLHASSGFTEEFETLKEFYQEVQSCTVDLGITADSSNHPDNKHKNRYINIVAYDH 1764

Query: 160  SRDHFCELDDERSPA-----AQYVDLLLNPERYTGYKG---TSAWRVWNSIYEEN 206
            SR    +L ++         A YVD    P+ Y   +G   ++A   W  I+E N
Sbjct: 1765 SRVKLAQLAEKDGKLTDYINANYVDGYNRPKAYIAAQGPLKSTAEDFWRMIWEHN 1819


>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
           isoform 2 [Homo sapiens]
          Length = 244

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 62  KKLQERDYFRYYKVNLKRPCPFWAEDGHCSIKDC---HVEPCPESKI 105
           KK  + ++   Y +     C F+++ G CS K+C   H++  PESKI
Sbjct: 77  KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHID--PESKI 121


>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
           isoform 1 [Homo sapiens]
          Length = 269

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 62  KKLQERDYFRYYKVNLKRPCPFWAEDGHCSIKDC---HVEPCPESKI 105
           KK  + ++   Y +     C F+++ G CS K+C   H++  PESKI
Sbjct: 77  KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHID--PESKI 121


>gi|55770906 XPA binding protein 2 [Homo sapiens]
          Length = 855

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 143 LSNQSKEAFIDWARYDDSRDHFCELDDERSPAAQYVDLLLNPERYTGYKGTSAWRVWNSI 202
           LS +S E +I++ +  D  D           AAQ +  ++N ER+    G S +++W+ +
Sbjct: 175 LSPESAEEYIEYLKSSDRLDE----------AAQRLATVVNDERFVSKAGKSNYQLWHEL 224

Query: 203 YEENCFKPRSVYRPLNPLAPSRG 225
            +     P  V + LN  A  RG
Sbjct: 225 CDLISQNPDKV-QSLNVDAIIRG 246


>gi|18641364 protein tyrosine phosphatase, receptor type, C isoform
           3 precursor [Homo sapiens]
          Length = 1256

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 145 NQSKEAFIDWARYDDSRDHFCELDDERSP---AAQYVDLLLNPERYTGYKGTSAWRV--- 198
           NQ+K  ++D   YD +R    E++ +       A Y+D    P +Y   +G     V   
Sbjct: 627 NQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDF 686

Query: 199 WNSIYEE 205
           W  I+E+
Sbjct: 687 WRMIWEQ 693


>gi|18641347 protein tyrosine phosphatase, receptor type, C isoform
           1 precursor [Homo sapiens]
          Length = 1304

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 145 NQSKEAFIDWARYDDSRDHFCELDDERSP---AAQYVDLLLNPERYTGYKGTSAWRV--- 198
           NQ+K  ++D   YD +R    E++ +       A Y+D    P +Y   +G     V   
Sbjct: 675 NQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDF 734

Query: 199 WNSIYEE 205
           W  I+E+
Sbjct: 735 WRMIWEQ 741


>gi|18641362 protein tyrosine phosphatase, receptor type, C isoform
           2 precursor [Homo sapiens]
          Length = 1143

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 145 NQSKEAFIDWARYDDSRDHFCELDDERSP---AAQYVDLLLNPERYTGYKGTSAWRV--- 198
           NQ+K  ++D   YD +R    E++ +       A Y+D    P +Y   +G     V   
Sbjct: 514 NQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDF 573

Query: 199 WNSIYEE 205
           W  I+E+
Sbjct: 574 WRMIWEQ 580


>gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo
           sapiens]
          Length = 875

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 10/54 (18%)

Query: 109 IKAGHSNKYLKMANNTKELEDCEQANKLGAINSTLSNQSKEAFIDWARYDDSRD 162
           IKA H  K LK      E E   +ANK  A     +   +EAF+DW+  DD  D
Sbjct: 744 IKAKHREKRLK------EREARREANKRQA----KAKDEEEAFLDWSDDDDDDD 787


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,458,537
Number of Sequences: 37866
Number of extensions: 868893
Number of successful extensions: 1748
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 13
length of query: 467
length of database: 18,247,518
effective HSP length: 106
effective length of query: 361
effective length of database: 14,233,722
effective search space: 5138373642
effective search space used: 5138373642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.