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Search of human proteins with 23943880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23943880 translation initiation factor eIF-2B subunit
alpha/beta/delta-like protein isoform 2 [Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23943880 translation initiation factor eIF-2B subunit alpha/b... 629 0.0
gi|72534748 translation initiation factor eIF-2B subunit alpha/b... 546 e-155
gi|78000158 eukaryotic translation initiation factor 2B, subunit... 65 1e-10
gi|78000156 eukaryotic translation initiation factor 2B, subunit... 65 1e-10
gi|187607323 eukaryotic translation initiation factor 2B, subuni... 65 1e-10
gi|4503503 eukaryotic translation initiation factor 2B, subunit ... 59 8e-09
gi|7657058 eukaryotic translation initiation factor 2B, subunit ... 58 1e-08
gi|239756539 PREDICTED: hypothetical protein XP_002344929 [Homo ... 35 0.12
gi|239751144 PREDICTED: hypothetical protein XP_002347730 [Homo ... 35 0.12
gi|239745508 PREDICTED: hypothetical protein XP_002343507 [Homo ... 35 0.12
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 31 1.7
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 30 2.2
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 30 2.2
gi|4502663 CD37 antigen isoform A [Homo sapiens] 29 4.9
gi|68299759 ecotropic viral integration site 5 [Homo sapiens] 29 6.4
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens] 29 6.4
gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens] 28 8.4
gi|25188199 leucine carboxyl methyltransferase 2 [Homo sapiens] 28 8.4
>gi|23943880 translation initiation factor eIF-2B subunit
alpha/beta/delta-like protein isoform 2 [Homo sapiens]
Length = 322
Score = 629 bits (1623), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
Sbjct: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
Sbjct: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
Query: 121 VRERRETELCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLIT 180
VRERRETELCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLIT
Sbjct: 121 VRERRETELCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLIT 180
Query: 181 DSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDL 240
DSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDL
Sbjct: 181 DSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDL 240
Query: 241 RLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE 300
RLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE
Sbjct: 241 RLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE 300
Query: 301 ELRTALTTTISSRDGTLDGPQM 322
ELRTALTTTISSRDGTLDGPQM
Sbjct: 301 ELRTALTTTISSRDGTLDGPQM 322
>gi|72534748 translation initiation factor eIF-2B subunit
alpha/beta/delta-like protein isoform 1 [Homo sapiens]
Length = 369
Score = 546 bits (1406), Expect = e-155
Identities = 302/369 (81%), Positives = 307/369 (83%), Gaps = 47/369 (12%)
Query: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
Sbjct: 1 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 60
Query: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
Sbjct: 61 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 120
Query: 121 VRER--------RETELCEHWE------EHTRQRELPLRGPLG---------------GT 151
VRER E +L ++ H +R P G + GT
Sbjct: 121 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 180
Query: 152 VL------------------ETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 193
L ETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV
Sbjct: 181 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 240
Query: 194 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 253
SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER
Sbjct: 241 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 300
Query: 254 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR 313
PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR
Sbjct: 301 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR 360
Query: 314 DGTLDGPQM 322
DGTLDGPQM
Sbjct: 361 DGTLDGPQM 369
>gi|78000158 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 2 [Homo sapiens]
Length = 523
Score = 64.7 bits (156), Expect = 1e-10
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 129 LCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAM 188
L E W E R R + V+++RP+ +G R T LV+ +PA+ + + AA+
Sbjct: 346 LQEAWTEGRRFRVV---------VVDSRPWLEG-RHTLRSLVHAGVPASYLL--IPAASY 393
Query: 189 AHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEI 248
VS V++GA ++ANG ++VGT QLA+VA+ H +P V + R++T +
Sbjct: 394 VLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFV 453
Query: 249 IIEERPGQELTDVNGVRIAA------PGIGVWNPAFDVTPHDLITGGIITELGV 296
E +L G +A + + N +DVTP +L+ +ITELG+
Sbjct: 454 SNELDDPDDLQCKRGEHVALANWQNHASLRLLNLVYDVTPPELV-DLVITELGM 506
>gi|78000156 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 3 [Homo sapiens]
Length = 522
Score = 64.7 bits (156), Expect = 1e-10
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 129 LCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAM 188
L E W E R R + V+++RP+ +G R T LV+ +PA+ + + AA+
Sbjct: 345 LQEAWTEGRRFRVV---------VVDSRPWLEG-RHTLRSLVHAGVPASYLL--IPAASY 392
Query: 189 AHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEI 248
VS V++GA ++ANG ++VGT QLA+VA+ H +P V + R++T +
Sbjct: 393 VLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFV 452
Query: 249 IIEERPGQELTDVNGVRIAA------PGIGVWNPAFDVTPHDLITGGIITELGV 296
E +L G +A + + N +DVTP +L+ +ITELG+
Sbjct: 453 SNELDDPDDLQCKRGEHVALANWQNHASLRLLNLVYDVTPPELV-DLVITELGM 505
>gi|187607323 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 1 [Homo sapiens]
Length = 543
Score = 64.7 bits (156), Expect = 1e-10
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 129 LCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAM 188
L E W E R R + V+++RP+ +G R T LV+ +PA+ + + AA+
Sbjct: 366 LQEAWTEGRRFRVV---------VVDSRPWLEG-RHTLRSLVHAGVPASYLL--IPAASY 413
Query: 189 AHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEI 248
VS V++GA ++ANG ++VGT QLA+VA+ H +P V + R++T +
Sbjct: 414 VLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFV 473
Query: 249 IIEERPGQELTDVNGVRIAA------PGIGVWNPAFDVTPHDLITGGIITELGV 296
E +L G +A + + N +DVTP +L+ +ITELG+
Sbjct: 474 SNELDDPDDLQCKRGEHVALANWQNHASLRLLNLVYDVTPPELV-DLVITELGM 526
>gi|4503503 eukaryotic translation initiation factor 2B, subunit 1
alpha, 26kDa [Homo sapiens]
Length = 305
Score = 58.5 bits (140), Expect = 8e-09
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 152 VLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTAN 211
V E++P G ++ A L + +P T++ D+ V M + V+VGA+ VV NG N
Sbjct: 152 VTESQPDLSGKKM-AKALCHLNVPVTVVLDAAVGYIMEKADL--VIVGAEGVVENGGIIN 208
Query: 212 KVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPG- 270
K+GT Q+A+ AK PFYV A S +RL + ++ P + + +++A G
Sbjct: 209 KIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQ---QDVPDKFKYKADTLKVAQTGQ 264
Query: 271 -IGVWNPAFDVTPHDLITGGIITELGVFAPEELRTAL 306
+ +P D T LIT + T+LGV P + L
Sbjct: 265 DLKEEHPWVDYTAPSLIT-LLFTDLGVLTPSAVSDEL 300
>gi|7657058 eukaryotic translation initiation factor 2B, subunit 2
beta, 39kDa [Homo sapiens]
Length = 351
Score = 57.8 bits (138), Expect = 1e-08
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 152 VLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTAN 211
V E P+ QG + A L I T++TD+ + A M+ V+ V++G ++ANG
Sbjct: 191 VAECAPFCQGHEM-AVNLSKAGIETTVMTDAAIFAVMSR--VNKVIIGTKTILANGALRA 247
Query: 212 KVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGI 271
GT+ LA+ AKHH P V AP + ++ + +E+ I +
Sbjct: 248 VTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEGDILEK-V 306
Query: 272 GVWNPAFDVTPHDLITGGIITELGVFAP 299
V P FD P +LIT I+ +G AP
Sbjct: 307 SVHCPVFDYVPPELIT-LFISNIGGNAP 333
>gi|239756539 PREDICTED: hypothetical protein XP_002344929 [Homo
sapiens]
Length = 223
Score = 34.7 bits (78), Expect = 0.12
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 25/146 (17%)
Query: 28 EAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLV 87
+A+ H A +R + + L G + V AG GG G A +++ + + LV
Sbjct: 53 DALARCHDAVSDVRQL------LLLLRGQCWILVGHGAGCGGRGRRA-GEWIQGENAGLV 105
Query: 88 TARPTAVNMARAARDLADVAAREAEREGATEEAVRERRETELCEHWEEHTRQRELPLRGP 147
T P+A AR+ R+ AD+A+ EGA +EA R + L + PLR P
Sbjct: 106 TRTPSA---ARSERNAADLAS-----EGAAQEAGRRKAAPGLL----------KAPLRPP 147
Query: 148 LGGTVLETRPYNQGARLTAFELVYEQ 173
+ E R + G R T E+
Sbjct: 148 PSFFLYEERAASNGRRRTGLRAAPER 173
>gi|239751144 PREDICTED: hypothetical protein XP_002347730 [Homo
sapiens]
Length = 223
Score = 34.7 bits (78), Expect = 0.12
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 25/146 (17%)
Query: 28 EAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLV 87
+A+ H A +R + + L G + V AG GG G A +++ + + LV
Sbjct: 53 DALARCHDAVSDVRQL------LLLLRGQCWILVGHGAGCGGRGRRA-GEWIQGENAGLV 105
Query: 88 TARPTAVNMARAARDLADVAAREAEREGATEEAVRERRETELCEHWEEHTRQRELPLRGP 147
T P+A AR+ R+ AD+A+ EGA +EA R + L + PLR P
Sbjct: 106 TRTPSA---ARSERNAADLAS-----EGAAQEAGRRKAAPGLL----------KAPLRPP 147
Query: 148 LGGTVLETRPYNQGARLTAFELVYEQ 173
+ E R + G R T E+
Sbjct: 148 PSFFLYEERAASNGRRRTGLRAAPER 173
>gi|239745508 PREDICTED: hypothetical protein XP_002343507 [Homo
sapiens]
Length = 223
Score = 34.7 bits (78), Expect = 0.12
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 25/146 (17%)
Query: 28 EAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLV 87
+A+ H A +R + + L G + V AG GG G A +++ + + LV
Sbjct: 53 DALARCHDAVSDVRQL------LLLLRGQCWILVGHGAGCGGRGRRA-GEWIQGENAGLV 105
Query: 88 TARPTAVNMARAARDLADVAAREAEREGATEEAVRERRETELCEHWEEHTRQRELPLRGP 147
T P+A AR+ R+ AD+A+ EGA +EA R + L + PLR P
Sbjct: 106 TRTPSA---ARSERNAADLAS-----EGAAQEAGRRKAAPGLL----------KAPLRPP 147
Query: 148 LGGTVLETRPYNQGARLTAFELVYEQ 173
+ E R + G R T E+
Sbjct: 148 PSFFLYEERAASNGRRRTGLRAAPER 173
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 30.8 bits (68), Expect = 1.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 95 NMARAARDLADVAAREAEREGATEEAVRERRETELCEHWEEHTRQRE 141
NMA+ L+D E E EG EE E E E E EE + E
Sbjct: 349 NMAKVLASLSDDEDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEE 395
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 30.4 bits (67), Expect = 2.2
Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 18/174 (10%)
Query: 87 VTARPTAVNMARAARDLADVAAREAEREGATEEAVRERRETELCEHWEEHTRQRELPLRG 146
+++ P +N A A L ++ EAE G E + E TR R G
Sbjct: 1277 LSSAPQELNPAVTAALLQLLSQPEAEPPGHLPH------EHQALRPMEYSTRPRPNRTYG 1330
Query: 147 PLGG-----TVLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGAD 201
G + ++T N G LT E + TL+ + + +++H G S+ G
Sbjct: 1331 NTDGPETGFSAIDTDERNSGPALT------ESLVQTLVKNRTFSGSLSHLGESSSYQGTG 1384
Query: 202 RVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPG 255
V GD + LA+ G PF A SS+ + ET + E PG
Sbjct: 1385 SVQFPGDQDLRFARVPLAL-HPVVGQPFLKAEGSSNSVVHAETKLQNYGELGPG 1437
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 30.4 bits (67), Expect = 2.2
Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 18/174 (10%)
Query: 87 VTARPTAVNMARAARDLADVAAREAEREGATEEAVRERRETELCEHWEEHTRQRELPLRG 146
+++ P +N A A L ++ EAE G E + E TR R G
Sbjct: 1286 LSSAPQELNPAVTAALLQLLSQPEAEPPGHLPH------EHQALRPMEYSTRPRPNRTYG 1339
Query: 147 PLGG-----TVLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGAD 201
G + ++T N G LT E + TL+ + + +++H G S+ G
Sbjct: 1340 NTDGPETGFSAIDTDERNSGPALT------ESLVQTLVKNRTFSGSLSHLGESSSYQGTG 1393
Query: 202 RVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPG 255
V GD + LA+ G PF A SS+ + ET + E PG
Sbjct: 1394 SVQFPGDQDLRFARVPLAL-HPVVGQPFLKAEGSSNSVVHAETKLQNYGELGPG 1446
>gi|4502663 CD37 antigen isoform A [Homo sapiens]
Length = 281
Score = 29.3 bits (64), Expect = 4.9
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 19 LLLPKQSRYEAVGSVH---QAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAG-GPGLAA 74
+L+ K S VG Q W + A+ IAL+GC+ EL+ G G+
Sbjct: 36 ILIDKTSFVSFVGLAFVPLQIWSKVLAISGIFTMGIALLGCVGALKELRCLLGLYFGMLL 95
Query: 75 LVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEAVRERRETELCEHWE 134
L+ + L L++ + A+ R L DV + ++ G E ET E W+
Sbjct: 96 LLFATQITLGILISTQ-----RAQLERSLRDVVEKTIQKYGTNPE------ETAAEESWD 144
>gi|68299759 ecotropic viral integration site 5 [Homo sapiens]
Length = 810
Score = 28.9 bits (63), Expect = 6.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 PTAVNMARAARDLADVAAREAEREGATEEAVRERRETELCEHWEEH 136
P N+AR +L V REAE +E ++ ++ E EHW+ H
Sbjct: 499 PDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLE--EHWQRH 542
>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
Length = 782
Score = 28.9 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 52 ALVGCLS-----LAVELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARA 99
A +GCL+ LA AG GPGLA L+A V + + A AV++ A
Sbjct: 417 AFLGCLTDVRQALAAPRVAGKEGPGLAELLANVASSILSHIKASLAAVHLFTA 469
>gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens]
Length = 452
Score = 28.5 bits (62), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 171 YEQIPATLITDSMVAAAMAHRGVSAVVVGAD 201
+ Q+PA +TDS + A ++H GV + G D
Sbjct: 258 FAQLPAHRVTDSCIVALLSH-GVEGAIYGVD 287
>gi|25188199 leucine carboxyl methyltransferase 2 [Homo sapiens]
Length = 686
Score = 28.5 bits (62), Expect = 8.4
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 50 AIALVGCLSLAVELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAAR---DLADV 106
A A+ C+ +E Q GA L A + + L TA +ARAA D DV
Sbjct: 60 ARAVRHCVRAFLE-QIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLARAAVWEVDFPDV 118
Query: 107 AAREAEREGATEE 119
A R+AER G T E
Sbjct: 119 ARRKAERIGETPE 131
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,835,529
Number of Sequences: 37866
Number of extensions: 505196
Number of successful extensions: 1420
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 20
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.