BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] (254 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] 517 e-147 gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 511 e-145 gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 511 e-145 gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] 506 e-143 gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] 419 e-117 gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] 414 e-116 gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens] 32 0.53 gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 31 1.2 gi|18201913 forkhead box N1 [Homo sapiens] 29 3.5 gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] 29 4.5 gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 29 4.5 gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 28 7.7 gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 28 7.7 gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 28 7.7 >gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] Length = 254 Score = 517 bits (1331), Expect = e-147 Identities = 254/254 (100%), Positives = 254/254 (100%) Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 Query: 181 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 240 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS Sbjct: 181 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 240 Query: 241 SPKHSSRERRRIQQ 254 SPKHSSRERRRIQQ Sbjct: 241 SPKHSSRERRRIQQ 254 >gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] Length = 253 Score = 511 bits (1315), Expect = e-145 Identities = 253/254 (99%), Positives = 253/254 (99%), Gaps = 1/254 (0%) Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 Query: 181 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 240 GPLAL ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS Sbjct: 181 GPLAL-ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 239 Query: 241 SPKHSSRERRRIQQ 254 SPKHSSRERRRIQQ Sbjct: 240 SPKHSSRERRRIQQ 253 >gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] Length = 253 Score = 511 bits (1315), Expect = e-145 Identities = 253/254 (99%), Positives = 253/254 (99%), Gaps = 1/254 (0%) Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 Query: 181 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 240 GPLAL ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS Sbjct: 181 GPLAL-ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 239 Query: 241 SPKHSSRERRRIQQ 254 SPKHSSRERRRIQQ Sbjct: 240 SPKHSSRERRRIQQ 253 >gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] Length = 255 Score = 506 bits (1302), Expect = e-143 Identities = 253/256 (98%), Positives = 253/256 (98%), Gaps = 3/256 (1%) Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ--VPKLELMPL 118 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ VPKLELMPL Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120 Query: 119 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 178 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF Sbjct: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180 Query: 179 IDGPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETEC 238 IDGPLAL ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETEC Sbjct: 181 IDGPLAL-ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETEC 239 Query: 239 QSSPKHSSRERRRIQQ 254 QSSPKHSSRERRRIQQ Sbjct: 240 QSSPKHSSRERRRIQQ 255 >gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] Length = 216 Score = 419 bits (1077), Expect = e-117 Identities = 215/254 (84%), Positives = 215/254 (84%), Gaps = 38/254 (14%) Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60 Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120 Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180 Query: 181 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 240 GPLALA KPLSLAGDEETECQS Sbjct: 181 GPLALAG--------------------------------------KPLSLAGDEETECQS 202 Query: 241 SPKHSSRERRRIQQ 254 SPKHSSRERRRIQQ Sbjct: 203 SPKHSSRERRRIQQ 216 >gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] Length = 204 Score = 414 bits (1065), Expect = e-116 Identities = 204/205 (99%), Positives = 204/205 (99%), Gaps = 1/205 (0%) Query: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ Sbjct: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60 Query: 110 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM Sbjct: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120 Query: 170 RSHCEIAVFIDGPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLS 229 RSHCEIAVFIDGPLAL ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLS Sbjct: 121 RSHCEIAVFIDGPLAL-ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLS 179 Query: 230 LAGDEETECQSSPKHSSRERRRIQQ 254 LAGDEETECQSSPKHSSRERRRIQQ Sbjct: 180 LAGDEETECQSSPKHSSRERRRIQQ 204 >gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens] Length = 546 Score = 32.0 bits (71), Expect = 0.53 Identities = 14/34 (41%), Positives = 22/34 (64%) Query: 13 GSRGRRAPRPREQDRDVQLSKALSYALRHGALKL 46 G+ RR+ E+D DV L++ L+Y LR G ++L Sbjct: 24 GAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRL 57 >gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo sapiens] Length = 271 Score = 30.8 bits (68), Expect = 1.2 Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 33/168 (19%) Query: 7 GRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRH-------GALKLGLPMGADGFVPLG 59 G Q + SR RRA RPR S+ + R G+L L LP G+ G Sbjct: 107 GPQSISRSRPRRAVRPRPGPWPAAPSRGPVRSCRGPRPGRALGSLPLVLPAGSCGSCQED 166 Query: 60 TLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRA--NQGHSLQVPKLELMP 117 +L N+ + AL++G GL A N+ + P+ P Sbjct: 167 SL-------------------GNQARPSALEIGASGVGLGSPAPSNRRNRYAPPE---SP 204 Query: 118 LETPQALPPMLVHGTFWKHWPSILLKGL--SCQGRTHIHLAPGLPGDP 163 +P A PP TF P+ K L C G + L P G P Sbjct: 205 KGSPSAKPPRACSDTFSARQPASTPKALPGGCPGDPELGLPPKRAGAP 252 >gi|18201913 forkhead box N1 [Homo sapiens] Length = 648 Score = 29.3 bits (64), Expect = 3.5 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%) Query: 146 SCQGRTHIHLAPGL--PGDP 163 SC G+T++HL+PGL PG P Sbjct: 449 SCYGQTYLHLSPGLAPPGPP 468 >gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] Length = 869 Score = 28.9 bits (63), Expect = 4.5 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 133 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 173 F K W LL+ + + G T I L+P LPG+ I S + C Sbjct: 321 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 362 >gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] Length = 775 Score = 28.9 bits (63), Expect = 4.5 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 133 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 173 F K W LL+ + + G T I L+P LPG+ I S + C Sbjct: 228 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 269 >gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo sapiens] Length = 1484 Score = 28.1 bits (61), Expect = 7.7 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 120 TPQALPPMLVHGTFWKHWPSILLKGLSC-QGRTHIHLAPGLPGDPGIISG 168 TP + P L GT +P + + GL H H++PGL G ++ G Sbjct: 1120 TPPSTDPGLTGGTV-SQFPPLYMPGLEYPNSAAHYHISPGLQGVGPVMGG 1168 >gi|113865921 hypothetical protein LOC441457 [Homo sapiens] Length = 492 Score = 28.1 bits (61), Expect = 7.7 Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 112 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 171 + E+ P++ PQA +L P L G+ C + APG+P + G Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145 Query: 172 HCE 174 CE Sbjct: 146 ACE 148 >gi|148806874 hypothetical protein LOC54754 [Homo sapiens] Length = 756 Score = 28.1 bits (61), Expect = 7.7 Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 112 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 171 + E+ P++ PQA +L P L G+ C + APG+P + G Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145 Query: 172 HCE 174 CE Sbjct: 146 ACE 148 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,219,709 Number of Sequences: 37866 Number of extensions: 569176 Number of successful extensions: 1755 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1739 Number of HSP's gapped (non-prelim): 16 length of query: 254 length of database: 18,247,518 effective HSP length: 100 effective length of query: 154 effective length of database: 14,460,918 effective search space: 2226981372 effective search space used: 2226981372 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.