Search of human proteins with 238550153

Search of human proteins with 238550153

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
         (253 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]       515   e-146
gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]       515   e-146
gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]       511   e-145
gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]       510   e-145
gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]       419   e-117
gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]        419   e-117
gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens]               32   0.53 
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ...    31   1.2  
gi|18201913 forkhead box N1 [Homo sapiens]                             29   3.4  
gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]          29   4.5  
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]          29   4.5  
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho...    28   7.7  
gi|113865921 hypothetical protein LOC441457 [Homo sapiens]             28   7.7  
gi|148806874 hypothetical protein LOC54754 [Homo sapiens]              28   7.7  

>gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
          Length = 253

 Score =  515 bits (1327), Expect = e-146
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
           MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60

Query: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
           LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120

Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
           PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180

Query: 181 GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS 240
           GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS
Sbjct: 181 GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS 240

Query: 241 PKHSSRERRRIQQ 253
           PKHSSRERRRIQQ
Sbjct: 241 PKHSSRERRRIQQ 253


>gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
          Length = 253

 Score =  515 bits (1327), Expect = e-146
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
           MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60

Query: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
           LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120

Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
           PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180

Query: 181 GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS 240
           GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS
Sbjct: 181 GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS 240

Query: 241 PKHSSRERRRIQQ 253
           PKHSSRERRRIQQ
Sbjct: 241 PKHSSRERRRIQQ 253


>gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]
          Length = 254

 Score =  511 bits (1315), Expect = e-145
 Identities = 253/254 (99%), Positives = 253/254 (99%), Gaps = 1/254 (0%)

Query: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
           MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60

Query: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
           LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120

Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
           PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180

Query: 181 GPLAL-ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 239
           GPLAL ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS
Sbjct: 181 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 240

Query: 240 SPKHSSRERRRIQQ 253
           SPKHSSRERRRIQQ
Sbjct: 241 SPKHSSRERRRIQQ 254


>gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
          Length = 255

 Score =  510 bits (1314), Expect = e-145
 Identities = 253/255 (99%), Positives = 253/255 (99%), Gaps = 2/255 (0%)

Query: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
           MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60

Query: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQV--PKLELMPL 118
           LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQV  PKLELMPL
Sbjct: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120

Query: 119 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 178
           ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF
Sbjct: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180

Query: 179 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 238
           IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ
Sbjct: 181 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 240

Query: 239 SSPKHSSRERRRIQQ 253
           SSPKHSSRERRRIQQ
Sbjct: 241 SSPKHSSRERRRIQQ 255


>gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
          Length = 216

 Score =  419 bits (1077), Expect = e-117
 Identities = 215/253 (84%), Positives = 215/253 (84%), Gaps = 37/253 (14%)

Query: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
           MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1   MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60

Query: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
           LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61  LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120

Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
           PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180

Query: 181 GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS 240
           GPLALA                                      KPLSLAGDEETECQSS
Sbjct: 181 GPLALAG-------------------------------------KPLSLAGDEETECQSS 203

Query: 241 PKHSSRERRRIQQ 253
           PKHSSRERRRIQQ
Sbjct: 204 PKHSSRERRRIQQ 216


>gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
          Length = 204

 Score =  419 bits (1077), Expect = e-117
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 50  MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
           MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 1   MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60

Query: 110 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169
           VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM
Sbjct: 61  VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120

Query: 170 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 229
           RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL
Sbjct: 121 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 180

Query: 230 AGDEETECQSSPKHSSRERRRIQQ 253
           AGDEETECQSSPKHSSRERRRIQQ
Sbjct: 181 AGDEETECQSSPKHSSRERRRIQQ 204


>gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens]
          Length = 546

 Score = 32.0 bits (71), Expect = 0.53
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 13 GSRGRRAPRPREQDRDVQLSKALSYALRHGALKL 46
          G+  RR+    E+D DV L++ L+Y LR G ++L
Sbjct: 24 GAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRL 57


>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
           sapiens]
          Length = 271

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 33/168 (19%)

Query: 7   GRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRH-------GALKLGLPMGADGFVPLG 59
           G Q  + SR RRA RPR        S+    + R        G+L L LP G+ G     
Sbjct: 107 GPQSISRSRPRRAVRPRPGPWPAAPSRGPVRSCRGPRPGRALGSLPLVLPAGSCGSCQED 166

Query: 60  TLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRA--NQGHSLQVPKLELMP 117
           +L                    N+ +  AL++G    GL   A  N+ +    P+    P
Sbjct: 167 SL-------------------GNQARPSALEIGASGVGLGSPAPSNRRNRYAPPE---SP 204

Query: 118 LETPQALPPMLVHGTFWKHWPSILLKGL--SCQGRTHIHLAPGLPGDP 163
             +P A PP     TF    P+   K L   C G   + L P   G P
Sbjct: 205 KGSPSAKPPRACSDTFSARQPASTPKALPGGCPGDPELGLPPKRAGAP 252


>gi|18201913 forkhead box N1 [Homo sapiens]
          Length = 648

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)

Query: 146 SCQGRTHIHLAPGL--PGDP 163
           SC G+T++HL+PGL  PG P
Sbjct: 449 SCYGQTYLHLSPGLAPPGPP 468


>gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]
          Length = 869

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 133 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 173
           F K W   LL+ +  + G T I L+P LPG+  I S   + C
Sbjct: 321 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 362


>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
          Length = 775

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 133 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 173
           F K W   LL+ +  + G T I L+P LPG+  I S   + C
Sbjct: 228 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 269


>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
            sapiens]
          Length = 1484

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 120  TPQALPPMLVHGTFWKHWPSILLKGLSC-QGRTHIHLAPGLPGDPGIISG 168
            TP +  P L  GT    +P + + GL       H H++PGL G   ++ G
Sbjct: 1120 TPPSTDPGLTGGTV-SQFPPLYMPGLEYPNSAAHYHISPGLQGVGPVMGG 1168


>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
          Length = 492

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 112 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 171
           + E+ P++ PQA   +L         P  L  G+ C     +  APG+P     + G   
Sbjct: 86  RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145

Query: 172 HCE 174
            CE
Sbjct: 146 ACE 148


>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
          Length = 756

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 112 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 171
           + E+ P++ PQA   +L         P  L  G+ C     +  APG+P     + G   
Sbjct: 86  RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145

Query: 172 HCE 174
            CE
Sbjct: 146 ACE 148


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,213,801
Number of Sequences: 37866
Number of extensions: 572410
Number of successful extensions: 1749
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 16
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.