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Search of human proteins with 238550105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238550105 SET domain containing 6 isoform b [Homo sapiens]
(449 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238550105 SET domain containing 6 isoform b [Homo sapiens] 905 0.0
gi|238550107 SET domain containing 6 isoform a [Homo sapiens] 892 0.0
gi|40068481 SET domain containing 3 isoform a [Homo sapiens] 90 4e-18
gi|40068483 SET domain containing 3 isoform b [Homo sapiens] 53 5e-07
gi|8393013 SET domain containing 4 isoform a [Homo sapiens] 46 6e-05
gi|55953063 SET domain containing 4 isoform c [Homo sapiens] 46 8e-05
gi|156616308 SET and MYND domain containing 4 [Homo sapiens] 33 0.53
gi|40806187 ADAM metallopeptidase with thrombospondin type 1 mot... 31 2.0
gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 30 3.4
gi|217416452 dynein, axonemal, intermediate polypeptide 2 [Homo ... 30 4.4
gi|4504665 interleukin 2 receptor beta precursor [Homo sapiens] 30 5.8
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 30 5.8
gi|110735441 ADAM metallopeptidase with thrombospondin type 1 mo... 30 5.8
gi|20149304 ISY1 splicing factor homolog [Homo sapiens] 29 7.6
gi|14149669 mitogen-activated protein kinase kinase kinase 7 int... 29 7.6
gi|50511945 cajalin 2 isoform a [Homo sapiens] 29 7.6
gi|239755184 PREDICTED: hypothetical protein [Homo sapiens] 29 9.9
gi|239749681 PREDICTED: hypothetical protein XP_002347118 [Homo ... 29 9.9
gi|239743948 PREDICTED: hypothetical protein XP_002342996 [Homo ... 29 9.9
gi|187936925 1-aminocyclopropane-1-carboxylate synthase homolog ... 29 9.9
gi|14211921 1-aminocyclopropane-1-carboxylate synthase homolog [... 29 9.9
gi|71040100 arrestin domain containing 2 isoform 2 [Homo sapiens] 29 9.9
gi|18373305 arrestin domain containing 2 isoform 1 [Homo sapiens] 29 9.9
>gi|238550105 SET domain containing 6 isoform b [Homo sapiens]
Length = 449
Score = 905 bits (2339), Expect = 0.0
Identities = 449/449 (100%), Positives = 449/449 (100%)
Query: 1 MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQ 60
MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQ
Sbjct: 1 MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQ 60
Query: 61 AGELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYF 120
AGELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYF
Sbjct: 61 AGELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYF 120
Query: 121 ALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFS 180
ALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFS
Sbjct: 121 ALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFS 180
Query: 181 LRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSA 240
LRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSA
Sbjct: 181 LRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSA 240
Query: 241 NCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQ 300
NCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQ
Sbjct: 241 NCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQ 300
Query: 301 GTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTEEELTTTLKVLCMPAEEFREL 360
GTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTEEELTTTLKVLCMPAEEFREL
Sbjct: 301 GTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTEEELTTTLKVLCMPAEEFREL 360
Query: 361 KDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVY 420
KDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVY
Sbjct: 361 KDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVY 420
Query: 421 AKLSWREQQALQVRYGQKMILHQLLELTS 449
AKLSWREQQALQVRYGQKMILHQLLELTS
Sbjct: 421 AKLSWREQQALQVRYGQKMILHQLLELTS 449
>gi|238550107 SET domain containing 6 isoform a [Homo sapiens]
Length = 473
Score = 892 bits (2304), Expect = 0.0
Identities = 449/473 (94%), Positives = 449/473 (94%), Gaps = 24/473 (5%)
Query: 1 MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKV-------------------- 40
MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKV
Sbjct: 1 MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKVSERAGGRRTRGGARAALTSP 60
Query: 41 ----AVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERERVALQSQS 96
AVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERERVALQSQS
Sbjct: 61 PAQVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERERVALQSQS 120
Query: 97 GWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKD 156
GWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKD
Sbjct: 121 GWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKD 180
Query: 157 LANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNS 216
LANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNS
Sbjct: 181 LANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNS 240
Query: 217 PVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFV 276
PVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFV
Sbjct: 241 PVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFV 300
Query: 277 EPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREE 336
EPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREE
Sbjct: 301 EPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREE 360
Query: 337 VLTEEELTTTLKVLCMPAEEFRELKDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSV 396
VLTEEELTTTLKVLCMPAEEFRELKDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSV
Sbjct: 361 VLTEEELTTTLKVLCMPAEEFRELKDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSV 420
Query: 397 LLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLELTS 449
LLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLELTS
Sbjct: 421 LLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLELTS 473
>gi|40068481 SET domain containing 3 isoform a [Homo sapiens]
Length = 594
Score = 90.1 bits (222), Expect = 4e-18
Identities = 107/410 (26%), Positives = 175/410 (42%), Gaps = 47/410 (11%)
Query: 50 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 106
G+G+ A ++A EL VPR L++ + +G L ++R+ LQ+ G + L LL
Sbjct: 105 GFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRI-LQAM-GNIALAFHLL 162
Query: 107 HELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQS 166
E +P S W+PY P + P+++ E+E R LQ T V N +Y +
Sbjct: 163 CERASPNSFWQPYIQTLP--SEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQY-A 218
Query: 167 IVLPFMEAHPDLFSLRVR---SLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAA 223
++ HP L ++ + E Y V+ VM Q P E+ + ++P
Sbjct: 219 YFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRV----TLALIPLW 274
Query: 224 DILNH---LANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYP 280
D+ NH L NLE C VA Q G +I+ YG +N + + GF +
Sbjct: 275 DMCNHTNGLITTGYNLE-DDRC-ECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFF--FD 330
Query: 281 DNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTE 340
+N+ D I++ + L K E + + F + E
Sbjct: 331 NNSHDRVKIKLGVSKSDRLYAMKAE------------VLARAGIPTSSVFALHFTEPPIS 378
Query: 341 EELTTTLKVLCMPAEEFRELKDQDGGGDD----KREEGSLTITNIPKLKASWRQLLQNSV 396
+L L+V CM EE +E D D E ++ N KL W L++
Sbjct: 379 AQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKL---W-TFLEDRA 434
Query: 397 LLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLE 446
L L+TY T ++ D+ +L N + LS R + A+++R G+K IL + ++
Sbjct: 435 SLLLKTYKTTIEEDKSVLKNHD----LSVRAKMAIKLRLGEKEILEKAVK 480
>gi|40068483 SET domain containing 3 isoform b [Homo sapiens]
Length = 296
Score = 53.1 bits (126), Expect = 5e-07
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 16/185 (8%)
Query: 50 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 106
G+G+ A ++A EL VPR L++ + +G L ++R+ LQ+ G + L LL
Sbjct: 105 GFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRI-LQAM-GNIALAFHLL 162
Query: 107 HELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQS 166
E +P S W+PY P + P+++ E+E R LQ T V N +Y +
Sbjct: 163 CERASPNSFWQPYIQTLP--SEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQY-A 218
Query: 167 IVLPFMEAHPDLFSLRVR---SLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAA 223
++ HP L ++ + E Y V+ VM Q P E+ + ++P
Sbjct: 219 YFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRV----TLALIPLW 274
Query: 224 DILNH 228
D+ NH
Sbjct: 275 DMCNH 279
>gi|8393013 SET domain containing 4 isoform a [Homo sapiens]
Length = 440
Score = 46.2 bits (108), Expect = 6e-05
Identities = 89/418 (21%), Positives = 163/418 (38%), Gaps = 64/418 (15%)
Query: 50 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 106
G G++++ S+Q G+++ +P + LL+ T +G + + + S + L L+
Sbjct: 59 GRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWK---PPPSPLLALCTFLV 115
Query: 107 HELQAP-ASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQ 165
E A S W+PY + P+ P+ E V + K L E +
Sbjct: 116 SEKHAGHRSLWKPYLEILPKAYTC--PVCLEPE----------VVNLLPKSLKAKAEEQR 163
Query: 166 SIVLPFMEAHPDLFSLRVRSLE-LYHQLVALVMAYS--------------FQEPLEEEED 210
+ V F + D FS SL+ L+ + V + +YS + P + E
Sbjct: 164 AHVQEFFASSRDFFS----SLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECL 219
Query: 211 EKEPNSPVMVPAADILNHLANHNANLEYS--ANCLRMVATQPIPKGHEIFNTYGQMANWQ 268
EP++ + P D+LNH + ++ + + T K E+F YG N +
Sbjct: 220 SAEPDTCALAPYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQR 279
Query: 269 LIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEG 328
L YGFV + + +++ L T + ++ + + + G +G
Sbjct: 280 LFLEYGFVSVHNPHACVYVSREILV---KYLPSTDKQMDKKISILKDHGYIENLTFGWDG 336
Query: 329 AFVIGREEVLTEEELTTTLKVLCMPAEEFRELKDQDGGG--DDKREEGSLTITNIPKLKA 386
L T LK+LC+ AE+F K G D E+ SL I K
Sbjct: 337 ----------PSWRLLTALKLLCLEAEKFTCWKKVLLGEVISDTNEKTSLDIAQ----KI 382
Query: 387 SWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQL 444
+ + + + +L ++ +K ++ L N+ + W E+ L++ LH L
Sbjct: 383 CYYFIEETNAVLQKVSH---MKDEKEALINQLTLVESLWTEE--LKILRASAETLHSL 435
>gi|55953063 SET domain containing 4 isoform c [Homo sapiens]
Length = 307
Score = 45.8 bits (107), Expect = 8e-05
Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 40/248 (16%)
Query: 50 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 106
G G++++ S+Q G+++ +P + LL+ T +G + + + S + L L+
Sbjct: 59 GRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWK---PPPSPLLALCTFLV 115
Query: 107 HELQAP-ASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQ 165
E A S W+PY + P+ P+ E V + K L E +
Sbjct: 116 SEKHAGHRSLWKPYLEILPKAYTC--PVCLEPE----------VVNLLPKSLKAKAEEQR 163
Query: 166 SIVLPFMEAHPDLFSLRVRSLE-LYHQLVALVMAYS--------------FQEPLEEEED 210
+ V F + D FS SL+ L+ + V + +YS + P + E
Sbjct: 164 AHVQEFFASSRDFFS----SLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECL 219
Query: 211 EKEPNSPVMVPAADILNHLANHNANLEYS--ANCLRMVATQPIPKGHEIFNTYGQMANWQ 268
EP++ + P D+LNH + ++ + + T K E+F YG N +
Sbjct: 220 SAEPDTCALAPYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQR 279
Query: 269 LIHMYGFV 276
L YGFV
Sbjct: 280 LFLEYGFV 287
>gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
Length = 804
Score = 33.1 bits (74), Expect = 0.53
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 221 PAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYP 280
P +LNH + N ++ + + + A+Q I KG EI +H YG +
Sbjct: 533 PVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEI------------LHCYGPHKSRM 580
Query: 281 DNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLC 319
+ ++ + A +TEA R RW+ C
Sbjct: 581 GVAERQQKLRSQYFFDCACPACQTEAHRMAAGPRWEAFC 619
>gi|40806187 ADAM metallopeptidase with thrombospondin type 1 motif,
18 preproprotein [Homo sapiens]
Length = 1221
Score = 31.2 bits (69), Expect = 2.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 CFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARES--VQAGEL 64
C WC RVG K + +GTV G M R+ V+ GEL
Sbjct: 541 CKSLWCHRVGHRCETKFMPAAEGTVCGLSMWCRQGQCVKFGEL 583
>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
Length = 433
Score = 30.4 bits (67), Expect = 3.4
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 208 EEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM--- 264
E++E + P ++NH N + Y + A Q I G E+F +Y +
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYP 246
Query: 265 ---ANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLV 311
N +L Y F + T D V +R+ + K EA R +V
Sbjct: 247 TEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLS-DPPKAEAIRDMV 295
>gi|217416452 dynein, axonemal, intermediate polypeptide 2 [Homo
sapiens]
Length = 605
Score = 30.0 bits (66), Expect = 4.4
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 322 EMVGEEGAFVIGREEVLTEEELTTTLKVLCMPAEE------FRELKDQDGGGDDKREEGS 375
EM +E GR+E T+EEL L+ L AEE F ELK K+E +
Sbjct: 516 EMRLKEKGKAEGRDEEQTDEELAVDLEALVSKAEEEFFDIIFAELK--------KKEADA 567
Query: 376 LTITNIPK 383
+ +T +P+
Sbjct: 568 IKLTPVPQ 575
>gi|4504665 interleukin 2 receptor beta precursor [Homo sapiens]
Length = 551
Score = 29.6 bits (65), Expect = 5.8
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 287 ADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEG---AFVIGREEVLTEEEL 343
A+I V ++ ALQ T + RW+ C+L V + ++G + ++L
Sbjct: 42 ANISCVWSQDGALQDTSCQVHAWPDRRRWNQTCELLPVSQASWACNLILGAPD---SQKL 98
Query: 344 TT----TLKVLCMPAEEFRELKDQD 364
TT TL+VLC +R + QD
Sbjct: 99 TTVDIVTLRVLCREGVRWRVMAIQD 123
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 29.6 bits (65), Expect = 5.8
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 177 DLFSLRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADI-LNHLANHNAN 235
DL + + +LY L + ++A Q L + ED + + P+ +P D+ L HL ++
Sbjct: 1103 DLVTECEKYAQLYSNLTSSILAGCIQMVLGQIEDHRRTHQPINIPFFDVFLRHLCQGSSV 1162
Query: 236 LEYSANCLRMVATQPIPKGHEIFNTYGQMANWQ 268
C V P + W+
Sbjct: 1163 EVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWE 1195
>gi|110735441 ADAM metallopeptidase with thrombospondin type 1
motif, 16 preproprotein [Homo sapiens]
Length = 1224
Score = 29.6 bits (65), Expect = 5.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 24 CFLSWCRRVGLELSPKVAVSRQGTVAGYGMVAR 56
C WC R+G + K + +GT+ G+ M R
Sbjct: 538 CKALWCHRIGRKCETKFMPAAEGTICGHDMWCR 570
>gi|20149304 ISY1 splicing factor homolog [Homo sapiens]
Length = 285
Score = 29.3 bits (64), Expect = 7.6
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 332 IGREEVLTEEELTTTLKVLCMPAEEFRELKDQDGGGDDKREEGSLTITNIPKLKASWRQL 391
+ R E EEE + + + EE E Q+ GGDD +++ + +P + L
Sbjct: 197 LARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQQK-FIAHVPVPSQQEIEEAL 255
Query: 392 LQNSVLLTLQTYATD 406
++ + LQ YA++
Sbjct: 256 VRRKKMELLQKYASE 270
>gi|14149669 mitogen-activated protein kinase kinase kinase 7
interacting protein 2 [Homo sapiens]
Length = 693
Score = 29.3 bits (64), Expect = 7.6
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 212 KEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIH 271
K NS +P+ + + L + N L+ +CL K ++F G N IH
Sbjct: 578 KRSNSISQIPSLEEMQQLRSCNRQLQIDIDCL--------TKEIDLFQARGPHFNPSAIH 629
Query: 272 MY----GFVEPYPDNTDDTADI 289
+ GFV P P D I
Sbjct: 630 NFYDNIGFVGPVPPKPKDQRSI 651
>gi|50511945 cajalin 2 isoform a [Homo sapiens]
Length = 1248
Score = 29.3 bits (64), Expect = 7.6
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 158 ANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEE-EDEKEPNS 216
ANI+ VL ++ HP SL++ +L L L + + +EP++E+ E +S
Sbjct: 252 ANIKDSLGRTVLDILKEHPSQKSLQIATL-LQEYLEGVGRSTVLEEPVQEDATQETHISS 310
Query: 217 PVMVPA 222
PV P+
Sbjct: 311 PVESPS 316
>gi|239755184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 28.9 bits (63), Expect = 9.9
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 292 VTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE-EGAFVIGREEVLTEEELTTTLKVL 350
V REA G + EAE LV+ LE+ G + GRE+ L +E T TL +
Sbjct: 58 VDPREAGAAGVRKEAEEALVW--------LEVTGSVHQLHIPGREKSLAQERATGTLILA 109
Query: 351 CMPA 354
P+
Sbjct: 110 SKPS 113
>gi|239749681 PREDICTED: hypothetical protein XP_002347118 [Homo
sapiens]
Length = 125
Score = 28.9 bits (63), Expect = 9.9
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 292 VTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE-EGAFVIGREEVLTEEELTTTLKVL 350
V REA G + EAE LV+ LE+ G + GRE+ L +E T TL +
Sbjct: 58 VDPREAGAAGVRKEAEEALVW--------LEVTGSVHQLHIPGREKSLAQERATGTLILA 109
Query: 351 CMPA 354
P+
Sbjct: 110 SKPS 113
>gi|239743948 PREDICTED: hypothetical protein XP_002342996 [Homo
sapiens]
Length = 125
Score = 28.9 bits (63), Expect = 9.9
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 292 VTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE-EGAFVIGREEVLTEEELTTTLKVL 350
V REA G + EAE LV+ LE+ G + GRE+ L +E T TL +
Sbjct: 58 VDPREAGAAGVRKEAEEALVW--------LEVTGSVHQLHIPGREKSLAQERATGTLILA 109
Query: 351 CMPA 354
P+
Sbjct: 110 SKPS 113
>gi|187936925 1-aminocyclopropane-1-carboxylate synthase homolog
[Homo sapiens]
Length = 501
Score = 28.9 bits (63), Expect = 9.9
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 20 DPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGE-LLFVVPRAALLSQHT 78
+ VA FLS+ + + L P+ V G + + +A +AGE L P ++QH
Sbjct: 143 EEVAKFLSFYCKSPVPLRPENVVVLNGGASLFSALATVLCEAGEAFLIPTPYYGAITQHV 202
Query: 79 CSIGGL 84
C G +
Sbjct: 203 CLYGNI 208
>gi|14211921 1-aminocyclopropane-1-carboxylate synthase homolog
[Homo sapiens]
Length = 501
Score = 28.9 bits (63), Expect = 9.9
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 20 DPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGE-LLFVVPRAALLSQHT 78
+ VA FLS+ + + L P+ V G + + +A +AGE L P ++QH
Sbjct: 143 EEVAKFLSFYCKSPVPLRPENVVVLNGGASLFSALATVLCEAGEAFLIPTPYYGAITQHV 202
Query: 79 CSIGGL 84
C G +
Sbjct: 203 CLYGNI 208
>gi|71040100 arrestin domain containing 2 isoform 2 [Homo sapiens]
Length = 402
Score = 28.9 bits (63), Expect = 9.9
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 SW-CRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLL 85
SW C R + LS K+ R+G G + + G V+PRAA++ T G
Sbjct: 171 SWYCNRGLVSLSAKI--DRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGAR 228
Query: 86 ERERVALQSQSG 97
+++R + S +G
Sbjct: 229 KQKRAVVASLAG 240
>gi|18373305 arrestin domain containing 2 isoform 1 [Homo sapiens]
Length = 407
Score = 28.9 bits (63), Expect = 9.9
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 SW-CRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLL 85
SW C R + LS K+ R+G G + + G V+PRAA++ T G
Sbjct: 176 SWYCNRGLVSLSAKI--DRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGAR 233
Query: 86 ERERVALQSQSG 97
+++R + S +G
Sbjct: 234 KQKRAVVASLAG 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,347,021
Number of Sequences: 37866
Number of extensions: 789361
Number of successful extensions: 2339
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2324
Number of HSP's gapped (non-prelim): 25
length of query: 449
length of database: 18,247,518
effective HSP length: 106
effective length of query: 343
effective length of database: 14,233,722
effective search space: 4882166646
effective search space used: 4882166646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.