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Search of human proteins with 22748693
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748693 hypothetical protein LOC120534 [Homo sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748693 hypothetical protein LOC120534 [Homo sapiens] 549 e-157
gi|169168306 PREDICTED: hypothetical protein [Homo sapiens] 108 4e-24
gi|169168033 PREDICTED: hypothetical protein [Homo sapiens] 108 4e-24
gi|169167503 PREDICTED: hypothetical protein [Homo sapiens] 108 4e-24
gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens] 32 0.55
gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens] 32 0.55
gi|22035569 GC-rich sequence DNA-binding factor candidate isofor... 30 1.6
gi|22035565 GC-rich sequence DNA-binding factor candidate isofor... 30 1.6
gi|31791053 zinc finger protein 804B [Homo sapiens] 30 2.1
gi|150456415 HEAT repeat containing 5A [Homo sapiens] 29 4.7
gi|215599992 cyclin D binding myb-like transcription factor 1 is... 28 8.0
gi|215599981 cyclin D binding myb-like transcription factor 1 is... 28 8.0
gi|215599967 cyclin D binding myb-like transcription factor 1 is... 28 8.0
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens] 28 8.0
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens] 28 8.0
>gi|22748693 hypothetical protein LOC120534 [Homo sapiens]
Length = 260
Score = 549 bits (1415), Expect = e-157
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHH 60
MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHH
Sbjct: 1 MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHH 60
Query: 61 VKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCT 120
VKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCT
Sbjct: 61 VKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCT 120
Query: 121 QIINGSVDVDTEDRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRRLTKNAT 180
QIINGSVDVDTEDRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRRLTKNAT
Sbjct: 121 QIINGSVDVDTEDRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRRLTKNAT 180
Query: 181 AGSDRQVIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRK 240
AGSDRQVIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRK
Sbjct: 181 AGSDRQVIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRK 240
Query: 241 WLYEQIEIEGGEIIHNKHAG 260
WLYEQIEIEGGEIIHNKHAG
Sbjct: 241 WLYEQIEIEGGEIIHNKHAG 260
>gi|169168306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 108 bits (271), Expect = 4e-24
Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 5/110 (4%)
Query: 147 KALRSLQFTNPGRQT-EFAPETGKREKR-RLTKNATAGSDRQVIPAKSKVYDSQGLLIFS 204
+ L+ L F NPG Q +F PET +++K+ R++K S + I K YD G LI +
Sbjct: 37 RQLKCLAFRNPGPQVADFNPETRQQKKKARMSKMNEYFSTKYKIMRK---YDKSGRLICN 93
Query: 205 GMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEII 254
DLCDCL+++CLGCFY CP C S KCG ECRC+R+W+Y+ I E GE+I
Sbjct: 94 DADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAIVTESGEVI 143
>gi|169168033 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 108 bits (271), Expect = 4e-24
Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 5/110 (4%)
Query: 147 KALRSLQFTNPGRQT-EFAPETGKREKR-RLTKNATAGSDRQVIPAKSKVYDSQGLLIFS 204
+ L+ L F NPG Q +F PET +++K+ R++K S + I K YD G LI +
Sbjct: 37 RQLKCLAFRNPGPQVADFNPETRQQKKKARMSKMNEYFSTKYKIMRK---YDKSGRLICN 93
Query: 205 GMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEII 254
DLCDCL+++CLGCFY CP C S KCG ECRC+R+W+Y+ I E GE+I
Sbjct: 94 DADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAIVTESGEVI 143
>gi|169167503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 108 bits (271), Expect = 4e-24
Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 5/110 (4%)
Query: 147 KALRSLQFTNPGRQT-EFAPETGKREKR-RLTKNATAGSDRQVIPAKSKVYDSQGLLIFS 204
+ L+ L F NPG Q +F PET +++K+ R++K S + I K YD G LI +
Sbjct: 37 RQLKCLAFRNPGPQVADFNPETRQQKKKARMSKMNEYFSTKYKIMRK---YDKSGRLICN 93
Query: 205 GMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEII 254
DLCDCL+++CLGCFY CP C S KCG ECRC+R+W+Y+ I E GE+I
Sbjct: 94 DADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAIVTESGEVI 143
>gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens]
Length = 1040
Score = 32.0 bits (71), Expect = 0.55
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 206 MDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWL 242
+++ CL DC C C GST CG + R +K L
Sbjct: 746 LNIYTCLASDCCLCCCCCGGGGSTCCGRQARARKKKL 782
>gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens]
Length = 896
Score = 32.0 bits (71), Expect = 0.55
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 206 MDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWL 242
+++ CL DC C C GST CG + R +K L
Sbjct: 746 LNIYTCLASDCCLCCCCCGGGGSTCCGRQARARKKKL 782
>gi|22035569 GC-rich sequence DNA-binding factor candidate isoform 2
[Homo sapiens]
Length = 815
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 124 NGSVDVDTE-DRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRRLTKNATAG 182
+G ++D E ++++ KP++ G + AL SL PG + A R+KR++ +
Sbjct: 182 HGEDEMDMESEKEEEKPKTGGAFSNALSSLNVLRPGEIPDAAFIHAARKKRQMARELGDF 241
Query: 183 SDRQVIPAKSKV 194
+ P K ++
Sbjct: 242 TPHDNEPGKGRL 253
>gi|22035565 GC-rich sequence DNA-binding factor candidate isoform 1
[Homo sapiens]
Length = 917
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 124 NGSVDVDTE-DRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRRLTKNATAG 182
+G ++D E ++++ KP++ G + AL SL PG + A R+KR++ +
Sbjct: 182 HGEDEMDMESEKEEEKPKTGGAFSNALSSLNVLRPGEIPDAAFIHAARKKRQMARELGDF 241
Query: 183 SDRQVIPAKSKV 194
+ P K ++
Sbjct: 242 TPHDNEPGKGRL 253
>gi|31791053 zinc finger protein 804B [Homo sapiens]
Length = 1349
Score = 30.0 bits (66), Expect = 2.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 53 NNTICFHHVKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLD 96
+NTI + KI D+ + + ++ D IH +K N+H+ D+D
Sbjct: 293 HNTISINS-KILQDKHDSIDETLEDSIGIHASFSKSNIHLSDVD 335
>gi|150456415 HEAT repeat containing 5A [Homo sapiens]
Length = 1753
Score = 28.9 bits (63), Expect = 4.7
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 159 RQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGL-----LIFSGMDLCDCL 212
RQ A + +EKRR + ++++ +P + D+ GL L+F+ ++LC C+
Sbjct: 1344 RQIICAAQEHVKEKRRSAEVDDGAAEKETLPEFGEGKDTGGLVPGKSLVFATLELCVCI 1402
>gi|215599992 cyclin D binding myb-like transcription factor 1
isoform a [Homo sapiens]
Length = 760
Score = 28.1 bits (61), Expect = 8.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 27 GFKTLQELSSNDMLLLQLRTGMTLSGNNT-ICFHHVKIYIDRFED 70
G K L E N+ LL+ ++G + +NT HV+I + R ED
Sbjct: 405 GLKQLHENQKNNPTLLENKSGSGVPNSNTNSSVQHVQIRVARLED 449
>gi|215599981 cyclin D binding myb-like transcription factor 1
isoform b [Homo sapiens]
Length = 672
Score = 28.1 bits (61), Expect = 8.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 27 GFKTLQELSSNDMLLLQLRTGMTLSGNNT-ICFHHVKIYIDRFED 70
G K L E N+ LL+ ++G + +NT HV+I + R ED
Sbjct: 317 GLKQLHENQKNNPTLLENKSGSGVPNSNTNSSVQHVQIRVARLED 361
>gi|215599967 cyclin D binding myb-like transcription factor 1
isoform a [Homo sapiens]
Length = 760
Score = 28.1 bits (61), Expect = 8.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 27 GFKTLQELSSNDMLLLQLRTGMTLSGNNT-ICFHHVKIYIDRFED 70
G K L E N+ LL+ ++G + +NT HV+I + R ED
Sbjct: 405 GLKQLHENQKNNPTLLENKSGSGVPNSNTNSSVQHVQIRVARLED 449
>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
Length = 2817
Score = 28.1 bits (61), Expect = 8.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 151 SLQFTNPGRQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGL 200
SL F+N TE ET R + +A + VIPA +K S GL
Sbjct: 552 SLAFSNEETSTEKTAETETSRSREESADAPVDQNSVVIPAAAKDKISDGL 601
>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
Length = 2813
Score = 28.1 bits (61), Expect = 8.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 151 SLQFTNPGRQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGL 200
SL F+N TE ET R + +A + VIPA +K S GL
Sbjct: 552 SLAFSNEETSTEKTAETETSRSREESADAPVDQNSVVIPAAAKDKISDGL 601
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,303,220
Number of Sequences: 37866
Number of extensions: 447527
Number of successful extensions: 1190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1179
Number of HSP's gapped (non-prelim): 15
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.