Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 226061595
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226061595 TatD DNase domain containing 3 isoform 3 [Homo
sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226061595 TatD DNase domain containing 3 isoform 3 [Homo sapi... 474 e-134
gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo sapi... 462 e-131
gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo sapi... 444 e-125
gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo sapi... 441 e-124
gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo sapi... 391 e-109
gi|14042943 TatD DNase domain containing 1 isoform a [Homo sapiens] 61 8e-10
gi|225903439 TatD DNase domain containing 1 isoform b [Homo sapi... 55 4e-08
gi|225903424 TatD DNase domain containing 2 [Homo sapiens] 47 2e-05
gi|32698724 patatin-like phospholipase domain containing 2 [Homo... 30 1.9
gi|4504191 mutS homolog 6 [Homo sapiens] 28 5.4
gi|52485853 integrin, alpha 11 precursor [Homo sapiens] 28 5.4
gi|143770880 laminin, beta 4 [Homo sapiens] 28 7.1
>gi|226061595 TatD DNase domain containing 3 isoform 3 [Homo
sapiens]
Length = 240
Score = 474 bits (1221), Expect = e-134
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQQNILPR 240
EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQQNILPR
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQQNILPR 240
>gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo
sapiens]
Length = 281
Score = 462 bits (1190), Expect = e-131
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQ 234
EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQ
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQ 234
>gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo
sapiens]
Length = 274
Score = 444 bits (1141), Expect = e-125
Identities = 227/234 (97%), Positives = 227/234 (97%), Gaps = 7/234 (2%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQ 234
EGVRAGYFFSIPPSIIRSGQ KQKLVKQLPLTSICLETDSPALGPEKQ
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQ-------KQKLVKQLPLTSICLETDSPALGPEKQ 227
>gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo
sapiens]
Length = 273
Score = 441 bits (1135), Expect = e-124
Identities = 226/234 (96%), Positives = 226/234 (96%), Gaps = 8/234 (3%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQ 234
EGVRAGYFFSIPPSIIRSGQ QKLVKQLPLTSICLETDSPALGPEKQ
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQ--------QKLVKQLPLTSICLETDSPALGPEKQ 226
>gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo
sapiens]
Length = 253
Score = 391 bits (1005), Expect = e-109
Identities = 206/234 (88%), Positives = 206/234 (88%), Gaps = 28/234 (11%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLK VGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLK---------------------VGLDFSPRFAGTG 99
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 100 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 159
Query: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQ 234
EGVRAGYFFSIPPSIIRSGQ KQKLVKQLPLTSICLETDSPALGPEKQ
Sbjct: 160 EGVRAGYFFSIPPSIIRSGQ-------KQKLVKQLPLTSICLETDSPALGPEKQ 206
>gi|14042943 TatD DNase domain containing 1 isoform a [Homo sapiens]
Length = 297
Score = 61.2 bits (147), Expect = 8e-10
Identities = 51/212 (24%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 23 DLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQ-GLPPEDQR 81
DL DV+ +A + V + + + + + L++ NG +G HP + G ++
Sbjct: 31 DLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQT-NGMFFSTVGCHPTRCGEFEKNNP 89
Query: 82 SVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFAGTGEQKEEQRQVLIRQIQLAKRL 140
+ LK+L L + EN K +++AIGE GLDF +F K+ Q + +Q +L+++
Sbjct: 90 DLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC----PKDTQLKYFEKQFELSEQT 142
Query: 141 NLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGRPSVAMEGVRAGYFFSIPPSIIRS 198
LP+ +H R++ +++++ V ++H+FDG A + + +++
Sbjct: 143 KLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKT 202
Query: 199 GQLLSLFSKKQKLVKQLPLTSICLETDSPALG 230
L +++K +P + +ETD+P G
Sbjct: 203 EANL-------EVLKSIPSEKLMIETDAPWCG 227
>gi|225903439 TatD DNase domain containing 1 isoform b [Homo
sapiens]
Length = 250
Score = 55.5 bits (132), Expect = 4e-08
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 60 NGFVLPCLGVHPVQ-GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFA 117
NG +G HP + G ++ + LK+L L + EN K +++AIGE GLDF +F
Sbjct: 20 NGMFFSTVGCHPTRCGEFEKNNPDLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC 76
Query: 118 GTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGR 175
K+ Q + +Q +L+++ LP+ +H R++ +++++ V ++H+FDG
Sbjct: 77 ----PKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGT 132
Query: 176 PSVAMEGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALG 230
A + + +++ L +++K +P + +ETD+P G
Sbjct: 133 KEAAAALIDLDLYIGFNGCSLKTEANL-------EVLKSIPSEKLMIETDAPWCG 180
>gi|225903424 TatD DNase domain containing 2 [Homo sapiens]
Length = 761
Score = 46.6 bits (109), Expect = 2e-05
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 101 RLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQ 160
+ +A GE+GLD+S + EQ +V RQ+QLA L P+ +H R A + +++
Sbjct: 587 KAVAFGEMGLDYSYKCT---TPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMK 643
Query: 161 E--QGAEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLT 218
+ K+ H F G V ++ YF ++ S + ++ L +Q+PL
Sbjct: 644 KFVPPDYKIHRHCFTGSYPVIEPLLK--YFPNMSVGFTAVLTYSSAWEAREAL-RQIPLE 700
Query: 219 SICLETDSPALGPEK 233
I +ETD+P P +
Sbjct: 701 RIIVETDAPYFLPRQ 715
>gi|32698724 patatin-like phospholipase domain containing 2 [Homo
sapiens]
Length = 504
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 142 LPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVRAG----YFFSIPPSI 195
LP + H ++GR I+L + E V++ F+ + + V +G Y IPPS+
Sbjct: 102 LPADSHEHASGRLGISLTRVSDGENVIISHFNSKDELIQANVCSGFIPVYCGLIPPSL 159
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 28.5 bits (62), Expect = 5.4
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 166 KVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETD 225
K LL + G S + E + G+F+S P I+R+ Q K K +K+L L ++C E
Sbjct: 145 KRLLKPYTG--SKSKEAQKGGHFYSAKPEILRAMQRADEALNKDK-IKRLEL-AVCDEPS 200
Query: 226 SP 227
P
Sbjct: 201 EP 202
>gi|52485853 integrin, alpha 11 precursor [Homo sapiens]
Length = 1188
Score = 28.5 bits (62), Expect = 5.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 31 AKKANVVALVAVAEHSGEFEKIMQLSERYN--GFVLPCLGVHPVQGLPPE 78
AKK +V + S + EK++Q SER N + + LG + +G+ PE
Sbjct: 262 AKKVMIVITDGESHDSPDLEKVIQQSERDNVTRYAVAVLGYYNRRGINPE 311
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 28.1 bits (61), Expect = 7.1
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 73 QGLPPEDQRSVTLKDLDVALPI-IENYKDRLLAIG---EVGLDFSPRFAGTGEQKEEQRQ 128
+ +PPED V LD+ LPI +N D L+ I ++ D+ E+ + ++
Sbjct: 1492 ENVPPEDIEKVANGVLDIHLPIPSQNLTDELVKIQKHMQLCEDYRTDENRLNEEADGAQK 1551
Query: 129 VLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQE 161
+L++ K N+ +N+ T+N LQ+
Sbjct: 1552 LLVKAKAAEKAANILLNLDK------TLNQLQQ 1578
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,126,205
Number of Sequences: 37866
Number of extensions: 393954
Number of successful extensions: 972
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 13
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.