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Search of human proteins with 225903439
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|225903439 TatD DNase domain containing 1 isoform b [Homo
sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|225903439 TatD DNase domain containing 1 isoform b [Homo sapi... 520 e-148
gi|14042943 TatD DNase domain containing 1 isoform a [Homo sapiens] 520 e-148
gi|225903424 TatD DNase domain containing 2 [Homo sapiens] 69 3e-12
gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo sapi... 64 2e-10
gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo sapi... 60 2e-09
gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo sapi... 58 9e-09
gi|226061595 TatD DNase domain containing 3 isoform 3 [Homo sapi... 55 4e-08
gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo sapi... 43 3e-04
gi|157671947 hypothetical protein LOC79974 isoform 2 [Homo sapiens] 30 2.6
gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens] 30 2.6
gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens] 29 3.4
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 29 3.4
gi|145309330 zinc finger protein 792 [Homo sapiens] 29 3.4
gi|4507157 sortilin-related receptor containing LDLR class A rep... 28 5.8
>gi|225903439 TatD DNase domain containing 1 isoform b [Homo
sapiens]
Length = 250
Score = 520 bits (1339), Expect = e-148
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKV 60
MITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKV
Sbjct: 1 MITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKV 60
Query: 61 VAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDR 120
VAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDR
Sbjct: 61 VAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDR 120
Query: 121 CVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCG 180
CVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCG
Sbjct: 121 CVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCG 180
Query: 181 VKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYN 240
VKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYN
Sbjct: 181 VKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYN 240
Query: 241 NTIKVFFPGI 250
NTIKVFFPGI
Sbjct: 241 NTIKVFFPGI 250
>gi|14042943 TatD DNase domain containing 1 isoform a [Homo sapiens]
Length = 297
Score = 520 bits (1339), Expect = e-148
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKV 60
MITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKV
Sbjct: 48 MITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKV 107
Query: 61 VAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDR 120
VAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDR
Sbjct: 108 VAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDR 167
Query: 121 CVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCG 180
CVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCG
Sbjct: 168 CVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCG 227
Query: 181 VKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYN 240
VKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYN
Sbjct: 228 VKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYN 287
Query: 241 NTIKVFFPGI 250
NTIKVFFPGI
Sbjct: 288 NTIKVFFPGI 297
>gi|225903424 TatD DNase domain containing 2 [Homo sapiens]
Length = 761
Score = 69.3 bits (168), Expect = 3e-12
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 10/161 (6%)
Query: 22 MFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQ 81
+ + GCHP + ++ L+ L + K VA GE GLD+ P Q
Sbjct: 556 LVWGAFGCHPHFARYYSESQERNLLQALRH------PKAVAFGEMGLDYSYKCTTPVPEQ 609
Query: 82 LKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALID 141
K FE+Q +L+ K P+ +HCR + + L+IMK+ H F G+ L+
Sbjct: 610 HKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKKFVPPDYKIHRHCFTGSYPVIEPLLK 669
Query: 142 L--DLYIGFNGCSLKTEA--NLEVLKSIPSEKLMIETDAPW 178
++ +GF + A E L+ IP E++++ETDAP+
Sbjct: 670 YFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPY 710
>gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo
sapiens]
Length = 274
Score = 63.5 bits (153), Expect = 2e-10
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 20 NGMFFSTVGCHPTRCGEFEKNNPDLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC 76
NG +G HP + G ++ + LK+L L + EN K +++AIGE GLDF +F
Sbjct: 60 NGFVLPCLGVHPVQ-GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFA 117
Query: 77 ----PKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGT 132
K+ Q + +Q +L+++ LP+ +H R++ +++++ V ++H+FDG
Sbjct: 118 GTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGR 175
Query: 133 KEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIR 192
A + + +++ +++K +P + +ETD+P G
Sbjct: 176 PSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALG------------ 223
Query: 193 TAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 246
P K+ RNEP +I E ++ V+ E+ N +K+F
Sbjct: 224 ---PEKQV---------RNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 265
>gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo
sapiens]
Length = 273
Score = 60.1 bits (144), Expect = 2e-09
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 36/234 (15%)
Query: 20 NGMFFSTVGCHPTRCGEFEKNNPDLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC 76
NG +G HP + G ++ + LK+L L + EN K +++AIGE GLDF +F
Sbjct: 60 NGFVLPCLGVHPVQ-GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFA 117
Query: 77 ----PKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGT 132
K+ Q + +Q +L+++ LP+ +H R++ +++++ V ++H+FDG
Sbjct: 118 GTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGR 175
Query: 133 KEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIR 192
A + + S+ +++K +P + +ETD+P G
Sbjct: 176 PSVAMEGVRAGYFFSIPP-SIIRSGQQKLVKQLPLTSICLETDSPALG------------ 222
Query: 193 TAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 246
P K+ RNEP +I E ++ V+ E+ N +K+F
Sbjct: 223 ---PEKQV---------RNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 264
>gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo
sapiens]
Length = 281
Score = 57.8 bits (138), Expect = 9e-09
Identities = 57/241 (23%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 20 NGMFFSTVGCHPTRCGEFEKNNPDLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC 76
NG +G HP + G ++ + LK+L L + EN K +++AIGE GLDF +F
Sbjct: 60 NGFVLPCLGVHPVQ-GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFA 117
Query: 77 ----PKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGT 132
K+ Q + +Q +L+++ LP+ +H R++ +++++ V ++H+FDG
Sbjct: 118 GTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGR 175
Query: 133 KEAAAALIDLDLYIGFNGCSLKTEANL-------EVLKSIPSEKLMIETDAPWCGVKSTH 185
A + + +++ L +++K +P + +ETD+P G
Sbjct: 176 PSVAMEGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALG----- 230
Query: 186 AGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKV 245
P K+ RNEP +I E ++ V+ E+ N +K+
Sbjct: 231 ----------PEKQV---------RNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKL 271
Query: 246 F 246
F
Sbjct: 272 F 272
>gi|226061595 TatD DNase domain containing 3 isoform 3 [Homo
sapiens]
Length = 240
Score = 55.5 bits (132), Expect = 4e-08
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 20 NGMFFSTVGCHPTRCGEFEKNNPDLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC 76
NG +G HP + G ++ + LK+L L + EN K +++AIGE GLDF +F
Sbjct: 60 NGFVLPCLGVHPVQ-GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFA 117
Query: 77 ----PKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGT 132
K+ Q + +Q +L+++ LP+ +H R++ +++++ V ++H+FDG
Sbjct: 118 GTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGR 175
Query: 133 KEAAAALIDLDLYIGFNGCSLKTEANL-------EVLKSIPSEKLMIETDAPWCG 180
A + + +++ L +++K +P + +ETD+P G
Sbjct: 176 PSVAMEGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALG 230
>gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo
sapiens]
Length = 253
Score = 42.7 bits (99), Expect = 3e-04
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 26/169 (15%)
Query: 78 KDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAA 137
K+ Q + +Q +L+++ LP+ +H R++ +++++ V ++H+FDG A
Sbjct: 102 KEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGRPSVAM 159
Query: 138 ALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPT 197
+ + +++ +++K +P + +ETD+P G P
Sbjct: 160 EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALG---------------PE 204
Query: 198 KKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 246
K+ RNEP +I E ++ V+ E+ N +K+F
Sbjct: 205 KQV---------RNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 244
>gi|157671947 hypothetical protein LOC79974 isoform 2 [Homo sapiens]
Length = 783
Score = 29.6 bits (65), Expect = 2.6
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 142 LDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKW 201
L+++ F + KT+ + S +K + + P+ +++ A I K +
Sbjct: 506 LNVFEQFQFMNKKTQPHPLEWNSFTEDKNIEKPQVPFDAIENKKAAVPQI------KNEN 559
Query: 202 ESGHCLKDRNEPCHIIQI 219
+ HC D N PCHI QI
Sbjct: 560 KEIHCSDDENTPCHIKQI 577
>gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens]
Length = 1026
Score = 29.6 bits (65), Expect = 2.6
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 142 LDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKW 201
L+++ F + KT+ + S +K + + P+ +++ A I K +
Sbjct: 506 LNVFEQFQFMNKKTQPHPLEWNSFTEDKNIEKPQVPFDAIENKKAAVPQI------KNEN 559
Query: 202 ESGHCLKDRNEPCHIIQI 219
+ HC D N PCHI QI
Sbjct: 560 KEIHCSDDENTPCHIKQI 577
>gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens]
Length = 436
Score = 29.3 bits (64), Expect = 3.4
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 86 EKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLY 145
E+ ++++ T + + +HC L + D G+ H +G A A L++
Sbjct: 307 EECVQITDSTLIQLSIHCPRLQVLSLSHCELITD---DGIRHLGNG----ACAHDQLEV- 358
Query: 146 IGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKK 199
I + C L T+A+LE LKS S + + D + T AG K +RT P K
Sbjct: 359 IELDNCPLITDASLEHLKSCHSLERIELYDCQ----QITRAGIKRLRTHLPNIK 408
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 29.3 bits (64), Expect = 3.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 52 LAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFL 111
L E + V + E DF++++ P + +L+Y E+Q + Q LP L + E L
Sbjct: 874 LLEKHDESVTDVTEVPQDFEKIK--PVEYRLQYKERQLQYLLQNHLPTLLEEKQRAFEIL 931
Query: 112 D 112
D
Sbjct: 932 D 932
>gi|145309330 zinc finger protein 792 [Homo sapiens]
Length = 632
Score = 29.3 bits (64), Expect = 3.4
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 34 CGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSE 93
CG+F + L ++++ E G GECG F R K ++ E+ +E +E
Sbjct: 427 CGKFFSHIASLIQHQIVHTGERPHG----CGECGKAFSRSSDLMKHQRVHTGERPYECNE 482
Query: 94 QTKLPMFLHCRNSH 107
KL NSH
Sbjct: 483 CGKLFSQSSSLNSH 496
>gi|4507157 sortilin-related receptor containing LDLR class A repeats
preproprotein [Homo sapiens]
Length = 2214
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 102 HCRNSHAEFLDIMKRNRDRCV------GGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKT 155
HC F+D + +NR +C+ G++ DG+ E AA F GCS
Sbjct: 1270 HCEPLCTHFMDFVCKNRQQCLFHSMVCDGIIQCRDGSDEDAA----------FAGCSQDP 1319
Query: 156 E 156
E
Sbjct: 1320 E 1320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,376,235
Number of Sequences: 37866
Number of extensions: 391919
Number of successful extensions: 811
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 15
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.