Search of human proteins with 224593760

Search of human proteins with 224593760

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224593760 hypothetical protein LOC100130522 isoform 2 [Homo
sapiens]
         (100 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224593760 hypothetical protein LOC100130522 isoform 2 [Homo s...   213   3e-56
gi|224593758 hypothetical protein LOC100130522 isoform 1 [Homo s...   134   1e-32
gi|224593762 hypothetical protein LOC100130522 isoform 3 [Homo s...    70   5e-13
gi|134244285 Notch homolog 3 [Homo sapiens]                            30   0.41 
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap...    30   0.41 
gi|47157315 Janus kinase 3 [Homo sapiens]                              30   0.54 
gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo sapiens]    28   1.6  
gi|142353874 hypothetical protein LOC650662 [Homo sapiens]             26   5.9  
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]               26   7.8  

>gi|224593760 hypothetical protein LOC100130522 isoform 2 [Homo
           sapiens]
          Length = 100

 Score =  213 bits (542), Expect = 3e-56
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60
           MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD
Sbjct: 1   MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60

Query: 61  TGFQGPSLGWSLSNCTLGKGEKQEGVAFTLRSLRKVAVHA 100
           TGFQGPSLGWSLSNCTLGKGEKQEGVAFTLRSLRKVAVHA
Sbjct: 61  TGFQGPSLGWSLSNCTLGKGEKQEGVAFTLRSLRKVAVHA 100


>gi|224593758 hypothetical protein LOC100130522 isoform 1 [Homo
          sapiens]
          Length = 100

 Score =  134 bits (338), Expect = 1e-32
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60
          MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD
Sbjct: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60

Query: 61 T 61
          T
Sbjct: 61 T 61


>gi|224593762 hypothetical protein LOC100130522 isoform 3 [Homo
          sapiens]
          Length = 64

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32
          MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR
Sbjct: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 2    SPPRLSSSLGAHLPCIV-----PSPVLDCIRPRLLRKWDLGSWPAPGLS--------APH 48
            SPP  S++  A  PC+      P+P+    R    + W      AP  +         P 
Sbjct: 1330 SPPGASNASCAAAPCLHGGSCRPAPLAPFFRCACAQGWTGPRCEAPAAAPEVSEEPRCPR 1389

Query: 49   RHCKSLLSDFR-DTGFQGPSLGWSLSNCTLGKGE 81
              C++   D R D     P  GW   +C+L  G+
Sbjct: 1390 AACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGD 1423


>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
           sapiens]
          Length = 501

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2   SPPRLSSS----LGAHLPCIVPSPVLDCIRPRLLRKWD---LGSWPAPGLSAPH 48
           +PPRLS      LG H+ C  PSP L+ +   L ++ +   L +  +PG   PH
Sbjct: 394 APPRLSFRKLVLLGPHVLCAPPSPTLESMAQVLSQRLEAEGLSTLQSPGQLHPH 447


>gi|47157315 Janus kinase 3 [Homo sapiens]
          Length = 1124

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 18/78 (23%), Positives = 37/78 (47%)

Query: 14  LPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRDTGFQGPSLGWSLS 73
           L   V +P+    +  L+R+   G++   GLS PH   + LL+   D G     +  +L+
Sbjct: 413 LTVCVQNPLGPDYKGCLIRRSPTGTFLLVGLSRPHSSLRELLATCWDGGLHVDGVAVTLT 472

Query: 74  NCTLGKGEKQEGVAFTLR 91
           +C + + +++  +    R
Sbjct: 473 SCCIPRPKEKSNLIVVQR 490


>gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo
          sapiens]
          Length = 251

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 1  MSPPR--LSSSLGAHLPCIVPSPVLDC--IRPRLLRKWDLGSWPAPGLSAPHRHCKSLLS 56
          M  PR  L    GA L C+  S  L C          +DL +   P +S PH   +++LS
Sbjct: 3  MGVPRVILLCLFGAAL-CLTGSQALQCYSFEHTYFGPFDLRAMKLPSISCPHECFEAILS 61

Query: 57 DFRDTGFQGP 66
             DTG++ P
Sbjct: 62 --LDTGYRAP 69


>gi|142353874 hypothetical protein LOC650662 [Homo sapiens]
          Length = 148

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 28  PRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRDTGFQGPSL----GWSLSNCTLGKGEKQ 83
           PR++ + +LGSW     S P R     L          P      G        G+  K 
Sbjct: 41  PRVVGEQELGSWRERANSTPERRLSPALKHVSARPTSIPETPGERGARTRRDRAGRARKG 100

Query: 84  EG-VAFTLRSLRKVAVHA 100
           EG  A TL SLR  A  A
Sbjct: 101 EGAAASTLSSLRGAAPEA 118


>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
          Length = 1910

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 4    PRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCK 52
            P++S S+ A L C VPS       P L ++  L + P P  S   + C+
Sbjct: 1343 PQMSPSVAASLSCPVPS-----TPPELSQRATLDTVPPPPPSKVGKRCR 1386


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,820,757
Number of Sequences: 37866
Number of extensions: 235340
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 9
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.