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Search of human proteins with 223718169
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223718169 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 6 [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223718169 leucine rich transmembrane and 0-methyltransferase ... 516 e-147
gi|223718164 leucine rich transmembrane and 0-methyltransferase ... 496 e-141
gi|223718159 leucine rich transmembrane and 0-methyltransferase ... 496 e-141
gi|205830453 catechol-O-methyltransferase isoform MB-COMT [Homo ... 164 7e-41
gi|205830451 catechol-O-methyltransferase isoform MB-COMT [Homo ... 164 7e-41
gi|4502969 catechol-O-methyltransferase isoform MB-COMT [Homo sa... 164 7e-41
gi|6466450 catechol-O-methyltransferase isoform S-COMT [Homo sap... 160 1e-39
gi|31542747 catechol-O-methyltransferase domain containing 1 [Ho... 48 7e-06
gi|18104993 protein tyrosine phosphatase, non-receptor type 6 is... 33 0.24
gi|18104989 protein tyrosine phosphatase, non-receptor type 6 is... 33 0.24
gi|18104991 protein tyrosine phosphatase, non-receptor type 6 is... 33 0.24
gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens] 32 0.68
gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens] 32 0.68
gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens] 32 0.68
gi|90421313 cystic fibrosis transmembrane conductance regulator ... 31 0.89
gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange p... 30 2.0
gi|49472822 eukaryotic translation initiation factor 3, subunit ... 29 3.4
gi|150010661 SEC14-like 5 [Homo sapiens] 28 7.6
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 28 9.9
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 28 9.9
gi|21396500 HIRA interacting protein 3 [Homo sapiens] 28 9.9
gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens] 28 9.9
gi|5174669 sex comb on midleg-like 2 [Homo sapiens] 28 9.9
>gi|223718169 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 6 [Homo sapiens]
Length = 251
Score = 516 bits (1328), Expect = e-147
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPSLRDCLSGLRIEERAFSYVLTHALPGDPGHILT 60
MGTPWRKRKGIAGPGLPDLSCALVLQPSLRDCLSGLRIEERAFSYVLTHALPGDPGHILT
Sbjct: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPSLRDCLSGLRIEERAFSYVLTHALPGDPGHILT 60
Query: 61 TLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLL 120
TLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLL
Sbjct: 61 TLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLL 120
Query: 121 TVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRC 180
TVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRC
Sbjct: 121 TVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRC 180
Query: 181 YLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKD 240
YLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKD
Sbjct: 181 YLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKD 240
Query: 241 GIAQLTYAGPG 251
GIAQLTYAGPG
Sbjct: 241 GIAQLTYAGPG 251
>gi|223718164 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 4 [Homo sapiens]
Length = 291
Score = 496 bits (1277), Expect = e-141
Identities = 251/291 (86%), Positives = 251/291 (86%), Gaps = 40/291 (13%)
Query: 1 MGTPWRKRKGIAGPGLPDLSCALVLQP--------------------------------- 27
MGTPWRKRKGIAGPGLPDLSCALVLQP
Sbjct: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 60
Query: 28 -------SLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 80
SLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG
Sbjct: 61 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 120
Query: 81 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 140
QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG
Sbjct: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
Query: 141 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 200
FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV
Sbjct: 181 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 240
Query: 201 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG
Sbjct: 241 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
>gi|223718159 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 4 [Homo sapiens]
Length = 291
Score = 496 bits (1277), Expect = e-141
Identities = 251/291 (86%), Positives = 251/291 (86%), Gaps = 40/291 (13%)
Query: 1 MGTPWRKRKGIAGPGLPDLSCALVLQP--------------------------------- 27
MGTPWRKRKGIAGPGLPDLSCALVLQP
Sbjct: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 60
Query: 28 -------SLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 80
SLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG
Sbjct: 61 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 120
Query: 81 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 140
QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG
Sbjct: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
Query: 141 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 200
FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV
Sbjct: 181 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 240
Query: 201 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG
Sbjct: 241 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
>gi|205830453 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 164 bits (415), Expect = 7e-41
Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 3/228 (1%)
Query: 24 VLQPSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQIL 83
+LQP + + L G E+R ++VL HA PG+ +L +D + + E+ ++G KG+I+
Sbjct: 42 ILQP-IHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIV 100
Query: 84 MRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFDE 143
+++E P+ +LELG YCGYS + +AR L PG RL+T+E +P AA+ ++++ AG +
Sbjct: 101 DAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKD 160
Query: 144 HMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLAD 203
V L+VG+S+D+IP L+ +Y + D+V L H YL D LLE LL G +LAD
Sbjct: 161 -KVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLAD 219
Query: 204 HVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
+V+ PGAP FL + + + C H+ ++ + DG+ + Y GPG
Sbjct: 220 NVICPGAPDFLAHVRGSSCFEC-THYQSFLEYREVVDGLEKAIYKGPG 266
>gi|205830451 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 164 bits (415), Expect = 7e-41
Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 3/228 (1%)
Query: 24 VLQPSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQIL 83
+LQP + + L G E+R ++VL HA PG+ +L +D + + E+ ++G KG+I+
Sbjct: 42 ILQP-IHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIV 100
Query: 84 MRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFDE 143
+++E P+ +LELG YCGYS + +AR L PG RL+T+E +P AA+ ++++ AG +
Sbjct: 101 DAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKD 160
Query: 144 HMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLAD 203
V L+VG+S+D+IP L+ +Y + D+V L H YL D LLE LL G +LAD
Sbjct: 161 -KVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLAD 219
Query: 204 HVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
+V+ PGAP FL + + + C H+ ++ + DG+ + Y GPG
Sbjct: 220 NVICPGAPDFLAHVRGSSCFEC-THYQSFLEYREVVDGLEKAIYKGPG 266
>gi|4502969 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 164 bits (415), Expect = 7e-41
Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 3/228 (1%)
Query: 24 VLQPSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQIL 83
+LQP + + L G E+R ++VL HA PG+ +L +D + + E+ ++G KG+I+
Sbjct: 42 ILQP-IHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIV 100
Query: 84 MRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFDE 143
+++E P+ +LELG YCGYS + +AR L PG RL+T+E +P AA+ ++++ AG +
Sbjct: 101 DAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKD 160
Query: 144 HMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLAD 203
V L+VG+S+D+IP L+ +Y + D+V L H YL D LLE LL G +LAD
Sbjct: 161 -KVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLAD 219
Query: 204 HVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
+V+ PGAP FL + + + C H+ ++ + DG+ + Y GPG
Sbjct: 220 NVICPGAPDFLAHVRGSSCFEC-THYQSFLEYREVVDGLEKAIYKGPG 266
>gi|6466450 catechol-O-methyltransferase isoform S-COMT [Homo
sapiens]
Length = 221
Score = 160 bits (405), Expect = 1e-39
Identities = 81/213 (38%), Positives = 130/213 (61%), Gaps = 2/213 (0%)
Query: 39 EERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLEL 98
E+R ++VL HA PG+ +L +D + + E+ ++G KG+I+ +++E P+ +LEL
Sbjct: 6 EQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLEL 65
Query: 99 GTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIP 158
G YCGYS + +AR L PG RL+T+E +P AA+ ++++ AG + V L+VG+S+D+IP
Sbjct: 66 GAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKD-KVTLVVGASQDIIP 124
Query: 159 CLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAK 218
L+ +Y + D+V L H YL D LLE LL G +LAD+V+ PGAP FL + +
Sbjct: 125 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVR 184
Query: 219 SCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
+ C H+ ++ + DG+ + Y GPG
Sbjct: 185 GSSCFEC-THYQSFLEYREVVDGLEKAIYKGPG 216
>gi|31542747 catechol-O-methyltransferase domain containing 1 [Homo
sapiens]
Length = 262
Score = 48.1 bits (113), Expect = 7e-06
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 83 LMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFD 142
L RL++ K L+LGT+ GYS L +A ALP GR++T E D + + L R A
Sbjct: 97 LARLIQAKK---ALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-A 152
Query: 143 EHMVELIVGSSEDVIPCLRTQYQLSRADLVLL-AHRPRC---YLRDLQLLEAHALLPAGA 198
EH ++L + + + + L + D+ ++ A + C Y R LQLL +L
Sbjct: 153 EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR 212
Query: 199 TVLADHVLFP 208
+ VL P
Sbjct: 213 VLWRGKVLQP 222
>gi|18104993 protein tyrosine phosphatase, non-receptor type 6
isoform 3 [Homo sapiens]
Length = 624
Score = 33.1 bits (74), Expect = 0.24
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 HALPGDPGHILTTLDHWSSRCEYLSHMGPV 78
H +P +PG +L+ LD + R E L H GP+
Sbjct: 420 HGVPSEPGGVLSFLDQINQRQESLPHAGPI 449
>gi|18104989 protein tyrosine phosphatase, non-receptor type 6
isoform 1 [Homo sapiens]
Length = 595
Score = 33.1 bits (74), Expect = 0.24
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 HALPGDPGHILTTLDHWSSRCEYLSHMGPV 78
H +P +PG +L+ LD + R E L H GP+
Sbjct: 420 HGVPSEPGGVLSFLDQINQRQESLPHAGPI 449
>gi|18104991 protein tyrosine phosphatase, non-receptor type 6
isoform 2 [Homo sapiens]
Length = 597
Score = 33.1 bits (74), Expect = 0.24
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 HALPGDPGHILTTLDHWSSRCEYLSHMGPV 78
H +P +PG +L+ LD + R E L H GP+
Sbjct: 422 HGVPSEPGGVLSFLDQINQRQESLPHAGPI 451
>gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens]
Length = 919
Score = 31.6 bits (70), Expect = 0.68
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 49 HALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELG-TYCGYSTL 107
HAL G GHIL L WS ++ G + R + + P+CV +G T+ G +
Sbjct: 749 HALSGHTGHIL-ALYTWSG---WMIASGSQDKTV--RFWDLRVPSCVRVVGTTFHGTGSA 802
Query: 108 LIARALPPGGRLLTVERD 125
+ + A+ P GRLL ++
Sbjct: 803 VASVAVDPSGRLLATGQE 820
>gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens]
Length = 927
Score = 31.6 bits (70), Expect = 0.68
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 49 HALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELG-TYCGYSTL 107
HAL G GHIL L WS ++ G + R + + P+CV +G T+ G +
Sbjct: 757 HALSGHTGHIL-ALYTWSG---WMIASGSQDKTV--RFWDLRVPSCVRVVGTTFHGTGSA 810
Query: 108 LIARALPPGGRLLTVERD 125
+ + A+ P GRLL ++
Sbjct: 811 VASVAVDPSGRLLATGQE 828
>gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens]
Length = 920
Score = 31.6 bits (70), Expect = 0.68
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 49 HALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELG-TYCGYSTL 107
HAL G GHIL L WS ++ G + R + + P+CV +G T+ G +
Sbjct: 750 HALSGHTGHIL-ALYTWSG---WMIASGSQDKTV--RFWDLRVPSCVRVVGTTFHGTGSA 803
Query: 108 LIARALPPGGRLLTVERD 125
+ + A+ P GRLL ++
Sbjct: 804 VASVAVDPSGRLLATGQE 821
>gi|90421313 cystic fibrosis transmembrane conductance regulator
[Homo sapiens]
Length = 1480
Score = 31.2 bits (69), Expect = 0.89
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 75 MGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPG-GRLLTVERDPRTAAVAE 133
+ P++ +LM L+ E +L+ +CG L++ G GR++ RD R ++E
Sbjct: 203 IAPLQVALLMGLIWE-----LLQASAFCGLGFLIVLALFQAGLGRMMMKYRDQRAGKISE 257
Query: 134 KLI 136
+L+
Sbjct: 258 RLV 260
>gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange
protein 3 [Homo sapiens]
Length = 2177
Score = 30.0 bits (66), Expect = 2.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 124 RDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLVL 173
R RTAA++ KL++ D+H L + S E ++P L + + D L
Sbjct: 651 RSLRTAALSLKLLKNQEADQHSARLFIQSLEGLLPRLLSLSNVEEVDTAL 700
>gi|49472822 eukaryotic translation initiation factor 3, subunit 4
delta, 44kDa [Homo sapiens]
Length = 320
Score = 29.3 bits (64), Expect = 3.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 63 DHWSSRCEYLSHMGPVKGQILMRL 86
DHW++RC Y +GP++ ++ +L
Sbjct: 163 DHWTTRCPYKDTLGPMQKELAEQL 186
>gi|150010661 SEC14-like 5 [Homo sapiens]
Length = 696
Score = 28.1 bits (61), Expect = 7.6
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 81 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 140
+++M E++ P C ++ + G L +R+ P G + VER R A +L+R
Sbjct: 17 ELVMAAYEKRFPTCP-QIPVFLGSEVLRESRS--PDGAVHVVERSCRLRVDAPRLLRKIA 73
Query: 141 FDEHMV 146
EH+V
Sbjct: 74 GVEHVV 79
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 68 RCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPR 127
+CE + VK ++L EEK ELG G+ ++ +RA PP V+ +P
Sbjct: 658 KCEAQQELRTVKRKLLEE--EEKNARLQKELGDVQGHGRVVTSRAAPP-----PVDEEPE 710
Query: 128 TAAV 131
++ V
Sbjct: 711 SSEV 714
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 68 RCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPR 127
+CE + VK ++L EEK ELG G+ ++ +RA PP V+ +P
Sbjct: 739 KCEAQQELRTVKRKLLEE--EEKNARLQKELGDVQGHGRVVTSRAAPP-----PVDEEPE 791
Query: 128 TAAV 131
++ V
Sbjct: 792 SSEV 795
>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
Length = 556
Score = 27.7 bits (60), Expect = 9.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 59 LTTLDHWSSRCEYLSHMG-----PVKGQILMRLVEEK 90
L+TL H R YL+H G P + Q L RLVEE+
Sbjct: 21 LSTLTHSIVRRRYLAHSGRSHLEPEEKQALKRLVEEE 57
>gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]
Length = 1374
Score = 27.7 bits (60), Expect = 9.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 52 PGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEK 90
P PG I+ D W+ E ++H P + + R EEK
Sbjct: 331 PELPGEIIKNTDSWAPPLEIVNHRSPSREKKRARWEEEK 369
>gi|5174669 sex comb on midleg-like 2 [Homo sapiens]
Length = 700
Score = 27.7 bits (60), Expect = 9.9
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 74 HMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPP---GGRLLTVERDPRTAA 130
H GP +++R + + C LE T GY L P GG ++T D T +
Sbjct: 382 HFGPGPVNVVLRRIVQACVDCALETKTVFGY--------LKPDNRGGEVITASFDGETHS 433
Query: 131 VAEKLIRLAGFDEHMVE 147
+ + A F +E
Sbjct: 434 IQLPPVNSASFALRFLE 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.142 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,358,314
Number of Sequences: 37866
Number of extensions: 534983
Number of successful extensions: 1181
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 26
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.