Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCDC153 Sequence: fasta or formatted (210aa) NCBI GI: 222446647
Description:

coiled-coil domain containing 153

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         30           4
 C cysteine            1.0          2           1
 D aspartate           4.8         10           1
 E glutamate          11.9         25           3
 F phenylalanine       0.5          1           1
 G glycine             5.7         12           1
 H histidine           3.3          7           1
 I isoleucine          1.4          3           1
 K lysine              8.6         18           4
 L leucine            12.4         26           2
 M methionine          2.4          5           1
 N asparagine          1.0          2           1
 P proline             3.3          7           2
 Q glutamine           8.6         18           2
 R arginine           11.0         23           2
 S serine              4.3          9           1
 T threonine           1.0          2           1
 V valine              2.9          6           2
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 153 
AMOTL2                0.072   angiomotin like 2 
ANKRD24               0.070   ankyrin repeat domain 24 
CROCC                 0.067   ciliary rootlet coiled-coil 
PLEC1                 0.067   plectin 1 isoform 11 
PLEC1                 0.067   plectin 1 isoform 10 
PLEC1                 0.067   plectin 1 isoform 8 
PLEC1                 0.067   plectin 1 isoform 7 
PLEC1                 0.067   plectin 1 isoform 6 
PLEC1                 0.067   plectin 1 isoform 3 
PLEC1                 0.067   plectin 1 isoform 2 
PLEC1                 0.067   plectin 1 isoform 1 
MYH2                  0.062   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.062   myosin, heavy chain 2, skeletal muscle, adult [Homo...
RRBP1                 0.062   ribosome binding protein 1 
RRBP1                 0.062   ribosome binding protein 1 
FYCO1                 0.062   FYVE and coiled-coil domain containing 1 
MYH3                  0.059   myosin, heavy chain 3, skeletal muscle, embryonic [H...
RAB11FIP3             0.059   rab11-family interacting protein 3 isoform 2 
RAB11FIP3             0.059   rab11-family interacting protein 3 isoform 1 
TUFT1                 0.057   tuftelin 1 isoform 2 
TUFT1                 0.057   tuftelin 1 isoform 1 
MYH9                  0.057   myosin, heavy polypeptide 9, non-muscle 
MYH13                 0.057   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH7B                 0.057   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH10                 0.054   myosin, heavy polypeptide 10, non-muscle 
MYH7                  0.052   myosin, heavy chain 7, cardiac muscle, beta 
MYH14                 0.052   myosin, heavy chain 14 isoform 1 
MYH14                 0.052   myosin, heavy chain 14 isoform 2 
MYH14                 0.052   myosin, heavy chain 14 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press