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Search of human proteins with 221307490
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221307490 lengsin, lens protein with glutamine synthetase
domain isoform b [Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221307490 lengsin, lens protein with glutamine synthetase dom... 422 e-118
gi|221307485 lengsin, lens protein with glutamine synthetase dom... 360 e-100
gi|193290160 CTAGE family, member 4 [Homo sapiens] 29 2.5
gi|56847634 hypothetical protein LOC441294 [Homo sapiens] 29 2.5
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 29 3.2
gi|5453974 protein kinase N2 [Homo sapiens] 28 4.2
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H... 28 5.5
gi|61835172 fragile X mental retardation-related protein 1 isofo... 28 7.2
gi|61835148 fragile X mental retardation-related protein 1 isofo... 28 7.2
gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens] 27 9.4
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 27 9.4
gi|146262005 CTAGE family, member 6 [Homo sapiens] 27 9.4
>gi|221307490 lengsin, lens protein with glutamine synthetase domain
isoform b [Homo sapiens]
Length = 208
Score = 422 bits (1084), Expect = e-118
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDS 60
MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDS
Sbjct: 1 MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDS 60
Query: 61 SQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMP 120
SQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMP
Sbjct: 61 SQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMP 120
Query: 121 RGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTVSGM 180
RGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTVSGM
Sbjct: 121 RGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTVSGM 180
Query: 181 SIGRKTCSAALLELSSSRSLGKNGWQDS 208
SIGRKTCSAALLELSSSRSLGKNGWQDS
Sbjct: 181 SIGRKTCSAALLELSSSRSLGKNGWQDS 208
>gi|221307485 lengsin, lens protein with glutamine synthetase domain
isoform a [Homo sapiens]
Length = 509
Score = 360 bits (924), Expect = e-100
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDS 60
MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDS
Sbjct: 1 MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDS 60
Query: 61 SQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMP 120
SQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMP
Sbjct: 61 SQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMP 120
Query: 121 RGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVT 176
RGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVT
Sbjct: 121 RGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVT 176
>gi|193290160 CTAGE family, member 4 [Homo sapiens]
Length = 777
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 1 MNNEEDLLQEDSTRDEGNETEANSM--------NTLRRTRKKVTKPYVCSTEVGETDMSN 52
M ++ +L+ED+T D+ E E NS + L+ KK+ + + +
Sbjct: 276 MKDQAAVLEEDTTDDDNLELEVNSQWENGANLDDPLKGALKKLIHAAKLNVSLKSLEGER 335
Query: 53 SNDCMRDSSQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQE 111
++ ++ S T +L+ +K+++ A + + + FE+ + + + I F+QE
Sbjct: 336 NHIIIQLSEVDKTKEELTEHIKNLQTQQASLQSENIYFESEN-QKLQQKLKIMTEFYQE 393
>gi|56847634 hypothetical protein LOC441294 [Homo sapiens]
Length = 777
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 1 MNNEEDLLQEDSTRDEGNETEANSM--------NTLRRTRKKVTKPYVCSTEVGETDMSN 52
M ++ +L+ED+T D+ E E NS + L+ KK+ + + +
Sbjct: 276 MKDQAAVLEEDTTDDDNLELEVNSQWENGANLDDPLKGALKKLIHAAKLNVSLKSLEGER 335
Query: 53 SNDCMRDSSQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQE 111
++ ++ S T +L+ +K+++ A + + + FE+ + + + I F+QE
Sbjct: 336 NHIIIQLSEVDKTKEELTEHIKNLQTQQASLQSENIYFESEN-QKLQQKLKIMTEFYQE 393
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 28.9 bits (63), Expect = 3.2
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 7 LLQEDSTRDEGNETEANSMNTLRRTRKKVTK----------PYVC-------STEVGETD 49
+L TR+ N + N +++ RKK TK C S+E GE D
Sbjct: 433 ILPGSKTREPSNAKQQKEKNKVKKKRKKETKGREVRFGKRSDKFCSSESESESSESGEDD 492
Query: 50 MSN--SNDCMRDSSQILTPPQLSSRM 73
+ S+ C++ S +L P L S +
Sbjct: 493 RDSLGSSGCLKGSPLVLKDPSLFSSL 518
>gi|5453974 protein kinase N2 [Homo sapiens]
Length = 984
Score = 28.5 bits (62), Expect = 4.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 33 KKVTKPYVCSTEVGETDMSNSNDCMRDSSQILTPPQLSSRMKHIRQAMAKN 83
KKV P++ T G D+SN +D + ILTPP+ + Q M ++
Sbjct: 927 KKVKPPFI-PTIRGREDVSNFDDEFTSEAPILTPPREPRILSEEEQEMFRD 976
>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
sapiens]
Length = 1082
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 2 NNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKV--TKPYVCSTEVGETDMSNSND 55
N ++D ED + G+E+E + + R+T+KKV K S++ G S+S++
Sbjct: 720 NEDQD---EDEEKGRGSESEQSEEDGKRKTKKKVPERKGEASSSDEGSDSSSSSSE 772
>gi|61835172 fragile X mental retardation-related protein 1 isoform
c [Homo sapiens]
Length = 536
Score = 27.7 bits (60), Expect = 7.2
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 6 DLLQEDSTRDEGNETEANSMNTLRRTRKKVT-KPYVCSTEVGETDMSNSND-CMRDSSQI 63
D + D T D +S N RR+R++ T + V + E+D ++ N+ + +
Sbjct: 396 DNTESDQTADTDASESHHSTNRRRRSRRRRTDEDAVLMDGMTESDTASVNENGLVTVADY 455
Query: 64 LTPPQLSSRMKHI-RQAMAKNRLQFVRFEATDLHGVS 99
++ + SR +++ R+ +AKN+ + + + + HG S
Sbjct: 456 ISRAESQSRQRNLPRETLAKNKKEMAK-DVIEEHGPS 491
>gi|61835148 fragile X mental retardation-related protein 1 isoform
a [Homo sapiens]
Length = 621
Score = 27.7 bits (60), Expect = 7.2
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 6 DLLQEDSTRDEGNETEANSMNTLRRTRKKVT-KPYVCSTEVGETDMSNSND-CMRDSSQI 63
D + D T D +S N RR+R++ T + V + E+D ++ N+ + +
Sbjct: 481 DNTESDQTADTDASESHHSTNRRRRSRRRRTDEDAVLMDGMTESDTASVNENGLVTVADY 540
Query: 64 LTPPQLSSRMKHI-RQAMAKNRLQFVRFEATDLHGVS 99
++ + SR +++ R+ +AKN+ + + + + HG S
Sbjct: 541 ISRAESQSRQRNLPRETLAKNKKEMAK-DVIEEHGPS 576
>gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]
Length = 6306
Score = 27.3 bits (59), Expect = 9.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 100 RSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNIR 139
R++++P +EK ++G+ M +E PNP D +++ ++
Sbjct: 163 RNESMPLTLIREKGTYGMVMVTFEVEGGPNPPDEDLSPVK 202
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 27.3 bits (59), Expect = 9.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 170 CDTFTVTVSGMSIGRKTCSAALLELSSSRSLGKNG 204
CD G IG +C+AA ++ SS +SL G
Sbjct: 1635 CDVAVALQFGAEIGNYSCAAAGVQTSSKKSLDLTG 1669
>gi|146262005 CTAGE family, member 6 [Homo sapiens]
Length = 777
Score = 27.3 bits (59), Expect = 9.4
Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 1 MNNEEDLLQEDSTRDEGNETEANSM--------NTLRRTRKKVTKPYVCSTEVGETDMSN 52
M ++ +L+ED+T D+ E E NS + L+ KK+ + + +
Sbjct: 276 MKDQAAVLEEDTTDDDNLELEVNSQWENGANLDDPLKGALKKLIHAAKLNVSLKSLEGER 335
Query: 53 SNDCMRDSSQILTPPQLSSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQE 111
++ ++ S T +L+ +K+++ + + + FE+ + + + I F+QE
Sbjct: 336 NHIIIQLSEVDKTKEELTEHIKNLQTQQESLQSENIYFESEN-QKLQQKLKIMTEFYQE 393
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.128 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,372,843
Number of Sequences: 37866
Number of extensions: 286263
Number of successful extensions: 764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 12
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.