Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LGSN Sequence: fasta or formatted (208aa) NCBI GI: 221307490
Description:

lengsin, lens protein with glutamine synthetase domain isoform b

Referenced in:

Amino Acid Biosynthesis and Selected Derivatives
Crystallins and Other Eye Proteins

Other entries for this name:
alt prot [509aa] lengsin, lens protein with glutamine synthetase domain isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         10           2
 C cysteine            2.9          6           1
 D aspartate           5.8         12           1
 E glutamate           6.7         14           2
 F phenylalanine       3.4          7           2
 G glycine             4.3          9           1
 H histidine           1.9          4           1
 I isoleucine          3.8          8           1
 K lysine              4.8         10           2
 L leucine             7.2         15           2
 M methionine          4.8         10           1
 N asparagine          6.7         14           2
 P proline             4.3          9           2
 Q glutamine           3.4          7           1
 R arginine            8.2         17           2
 S serine             10.6         22           3
 T threonine           8.2         17           1
 V valine              6.2         13           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lengsin, lens protein with glutamine synthetase dom... 
LGSN                  0.844   lengsin, lens protein with glutamine synthetase dom...
CTAGE4                0.010   CTAGE family, member 4 
LOC441294             0.010   hypothetical protein LOC441294 
ANKRD11               0.010   ankyrin repeat domain 11 
PKN2                  0.008   protein kinase N2 
AP3B2                 0.008   adaptor-related protein complex 3, beta 2 subunit [H...
FXR1                  0.008   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.008   fragile X mental retardation-related protein 1 isofo...
GPR98                 0.005   G protein-coupled receptor 98 precursor 
CELSR3                0.005   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
CTAGE6                0.005   CTAGE family, member 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press