Guide to the Human Genome
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Name: C11orf65 Sequence: fasta or formatted (313aa) NCBI GI: 115298676
Description:

hypothetical protein LOC160140

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         18           3
 C cysteine            0.3          1           1
 D aspartate           6.1         19           2
 E glutamate           8.0         25           2
 F phenylalanine       4.8         15           1
 G glycine             5.4         17           2
 H histidine           3.8         12           2
 I isoleucine          6.1         19           1
 K lysine              8.3         26           2
 L leucine             6.7         21           2
 M methionine          2.2          7           1
 N asparagine          5.8         18           2
 P proline             3.8         12           2
 Q glutamine           4.2         13           2
 R arginine            5.8         18           2
 S serine              6.4         20           2
 T threonine           5.1         16           1
 V valine              4.2         13           2
 W tryptophan          2.9          9           1
 Y tyrosine            4.5         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC160140 
CXorf58               0.046   hypothetical protein LOC254158 
LRRIQ1                0.022   leucine-rich repeats and IQ motif containing 1 isof...
INVS                  0.010   inversin isoform a 
INVS                  0.010   inversin isoform b 
MGC50722              0.008   hypothetical protein LOC399693 
KIAA1683              0.008   KIAA1683 isoform a 
KIAA1683              0.008   KIAA1683 isoform c 
KIAA1683              0.008   KIAA1683 isoform b 
PPP1R9A               0.008   protein phosphatase 1, regulatory (inhibitor) subuni...
TMC5                  0.006   transmembrane channel-like 5 isoform b 
AKAP9                 0.006   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.006   A-kinase anchor protein 9 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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