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Search of human proteins with 217330616
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217330616 Sec61 alpha form 2 isoform c [Homo sapiens]
(437 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217330616 Sec61 alpha form 2 isoform c [Homo sapiens] 868 0.0
gi|14589847 Sec61 alpha form 2 isoform a [Homo sapiens] 820 0.0
gi|7019415 Sec61 alpha 1 subunit [Homo sapiens] 781 0.0
gi|217330618 Sec61 alpha form 2 isoform b [Homo sapiens] 762 0.0
gi|4755125 aquaporin 4 isoform b [Homo sapiens] 33 0.39
gi|4502181 aquaporin 4 isoform a [Homo sapiens] 33 0.39
gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens] 32 1.5
gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens] 32 1.5
gi|181337167 solute carrier family 7 (cationic amino acid transp... 32 1.5
gi|53828732 olfactory receptor, family 5, subfamily H, member 6 ... 31 2.5
gi|53933284 olfactory receptor, family 5, subfamily H, member 15... 31 2.5
gi|53933276 olfactory receptor, family 5, subfamily H, member 14... 30 4.3
gi|224548987 presenilin stabilization factor-like isoform 2 [Hom... 30 5.6
gi|50726954 presenilin stabilization factor-like isoform 1 [Homo... 30 5.6
gi|192807300 calcium channel, voltage-dependent, L type, alpha 1... 30 5.6
gi|192807298 calcium channel, voltage-dependent, L type, alpha 1... 30 5.6
gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D ... 30 5.6
gi|13540565 dendritic cell-specific transmembrane protein [Homo ... 30 5.6
gi|21361449 solute carrier family 2 (facilitated glucose transpo... 29 9.6
>gi|217330616 Sec61 alpha form 2 isoform c [Homo sapiens]
Length = 437
Score = 868 bits (2242), Expect = 0.0
Identities = 437/437 (100%), Positives = 437/437 (100%)
Query: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
Sbjct: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
Query: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRPKVKL 420
VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRPKVKL
Sbjct: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRPKVKL 420
Query: 421 RRWKGEGRHFTKRILFY 437
RRWKGEGRHFTKRILFY
Sbjct: 421 RRWKGEGRHFTKRILFY 437
>gi|14589847 Sec61 alpha form 2 isoform a [Homo sapiens]
Length = 476
Score = 820 bits (2119), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
Sbjct: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
Query: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR
Sbjct: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
>gi|7019415 Sec61 alpha 1 subunit [Homo sapiens]
Length = 476
Score = 781 bits (2018), Expect = 0.0
Identities = 387/415 (93%), Positives = 403/415 (97%)
Query: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
LYVISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH
Sbjct: 301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 360
Query: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
VVYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNR
Sbjct: 361 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNR 415
>gi|217330618 Sec61 alpha form 2 isoform b [Homo sapiens]
Length = 454
Score = 762 bits (1968), Expect = 0.0
Identities = 393/415 (94%), Positives = 393/415 (94%), Gaps = 22/415 (5%)
Query: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
MGIKFLEVIKPFCAVLPEIQKPERKI PLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKI----------------------PLFGIMSSDSAD 38
Query: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 39 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 98
Query: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 99 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 158
Query: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 159 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 218
Query: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
Sbjct: 219 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 278
Query: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
Sbjct: 279 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 338
Query: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR
Sbjct: 339 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 393
>gi|4755125 aquaporin 4 isoform b [Homo sapiens]
Length = 301
Score = 33.5 bits (75), Expect = 0.39
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 123 ITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLF 182
I+I +++ Y+ G A +GAGI L+ V GL V ++ L G+GL + L
Sbjct: 88 ISIAKSVFYIAAQCLG--AIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGL--LVELI 143
Query: 183 IATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLA 221
I + TI S T TG G +A+ HL A
Sbjct: 144 ITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFA 182
>gi|4502181 aquaporin 4 isoform a [Homo sapiens]
Length = 323
Score = 33.5 bits (75), Expect = 0.39
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 123 ITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLF 182
I+I +++ Y+ G A +GAGI L+ V GL V ++ L G+GL + L
Sbjct: 110 ISIAKSVFYIAAQCLG--AIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGL--LVELI 165
Query: 183 IATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLA 221
I + TI S T TG G +A+ HL A
Sbjct: 166 ITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFA 204
>gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens]
Length = 450
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 165 LDELLQKGYGLG-----SGISLFIATNICETIVWKAFSP 198
L++L QKG L +GISLF+ ++C +WK + P
Sbjct: 327 LEKLAQKGKSLSPLASITGISLFLIISMCLLFLWKKYQP 365
>gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens]
Length = 462
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 165 LDELLQKGYGLG-----SGISLFIATNICETIVWKAFSP 198
L++L QKG L +GISLF+ ++C +WK + P
Sbjct: 339 LEKLAQKGKSLSPLASITGISLFLIISMCLLFLWKKYQP 377
>gi|181337167 solute carrier family 7 (cationic amino acid
transporter, y+ system), member 14 [Homo sapiens]
Length = 771
Score = 31.6 bits (70), Expect = 1.5
Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 17/183 (9%)
Query: 79 LGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYG 138
+G V SGL+ + +AG +I + + +I + Y G+
Sbjct: 67 VGTGMYVVSGLVAKEMAGPGVI--------------VSFIIAAVASILSGVCYAEFGVRV 112
Query: 139 DPAEMGAGICLLIIIQLFVAGLIV--LLLDELLQKGYGLGSGISLFIATNICETIVWKAF 196
A + + FVA I L+L+ L+ G + S+F + W A
Sbjct: 113 PKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMAD 172
Query: 197 SPTTIN-TGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVV 255
S T+N G+G E ++AL + ++ + N+ N++NL VF+
Sbjct: 173 SVGTLNGLGKGEESYPDLLALLIAVIVTIIVALGVKNSIGFNNVLNVLNLAVWVFIMIAG 232
Query: 256 IYF 258
++F
Sbjct: 233 LFF 235
>gi|53828732 olfactory receptor, family 5, subfamily H, member 6
[Homo sapiens]
Length = 325
Score = 30.8 bits (68), Expect = 2.5
Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 32/155 (20%)
Query: 37 ITLFIFLVCCQIPLF---------------GIMSSDSADPFYWMRVILASNRGTLMELGI 81
+T F+ C+IPLF G++ DP + + L ++ +
Sbjct: 30 LTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASL 89
Query: 82 SPIVTSGLIMQLLAGAKIIEVGD---------TPKDRALFNGAQKLFGMIITIGQAIVYV 132
S VT +++ LA +K+I + + T F A + + I +A++Y
Sbjct: 90 SSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLY- 148
Query: 133 MTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDE 167
P M +C+ +++ F+ GL+ L+ E
Sbjct: 149 -------PVIMTNELCIQLLVLSFIGGLLHALIHE 176
>gi|53933284 olfactory receptor, family 5, subfamily H, member 15
[Homo sapiens]
Length = 313
Score = 30.8 bits (68), Expect = 2.5
Identities = 61/286 (21%), Positives = 110/286 (38%), Gaps = 50/286 (17%)
Query: 34 WTAITLFIFLVCCQIPLFGIMSSDSA---DPFYWMRVILASNRGTLMELGISPIVTSGLI 90
W FLV I + G + + DP + + L ++ IS VT ++
Sbjct: 23 WKIPLFLAFLVIYLITIMGNLGLIAVIWKDPHLHIPMYLLLGNLAFVDAWISSTVTPKML 82
Query: 91 MQLLAGAKIIEVGDTPKD---------RALFNGAQKLFGMIITIGQAIVYVMTGMYGDPA 141
LA +K+I + + F A + + I + ++Y PA
Sbjct: 83 NNFLAKSKMISLSECKIQFFSIAIGVTTECFLLATMAYDRYVAICKPLLY--------PA 134
Query: 142 EMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPT-- 199
M G+C+ ++I ++AG++ L+ E + L S + C+TI S T
Sbjct: 135 IMTNGLCIRLLILSYIAGILHALIHEGFL--FRLTFCNSNIVHHIYCDTIPLSKISCTDS 192
Query: 200 TINTGRGTEFEGAV-------------IALFHLLATRTDKVRALREAFYRQNLPNLMNLI 246
+IN F G++ LF +L ++DK +R+AF
Sbjct: 193 SINFLMVFIFSGSIQVFSIVTILISYTFVLFTVLEKKSDK--GVRKAF----------ST 240
Query: 247 ATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPII 292
+F+V +Y+ G + + + A + + LFYT IP++
Sbjct: 241 CGAHLFSVCLYY-GPLLLMYVGPASPQADGQNMVEPLFYTVIIPLL 285
>gi|53933276 olfactory receptor, family 5, subfamily H, member 14
[Homo sapiens]
Length = 310
Score = 30.0 bits (66), Expect = 4.3
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 22/147 (14%)
Query: 34 WTAITLFIFLVCCQIPLFGIMSSDSA---DPFYWMRVILASNRGTLMELGISPIVTSGLI 90
W FLV I + G + + DP + + L ++ +S VT ++
Sbjct: 23 WKIPLFLAFLVIYLITIMGNLGLIAVIWKDPHLHIPMYLLLGNLAFVDALLSSSVTLKML 82
Query: 91 MQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGD----------P 140
+ LA +K+I + + +LF I++ + T Y P
Sbjct: 83 INFLAKSKMISLSECKI---------QLFSFAISVTTECFLLATMAYDRYVAICKPLLYP 133
Query: 141 AEMGAGICLLIIIQLFVAGLIVLLLDE 167
A M G+C+ ++I +V GL+ L+ E
Sbjct: 134 AIMTNGLCIRLLILSYVGGLLHALIHE 160
>gi|224548987 presenilin stabilization factor-like isoform 2 [Homo
sapiens]
Length = 216
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 291 IILQSALVSNLYVISQMLSVRFSGNFLVN-LLGQWADVSGGGPARSYPVGGLC 342
++L LVS IS + + F++ L+G WA ++ GG RS + LC
Sbjct: 151 VLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLKLCLLC 203
>gi|50726954 presenilin stabilization factor-like isoform 1 [Homo
sapiens]
Length = 257
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 291 IILQSALVSNLYVISQMLSVRFSGNFLVN-LLGQWADVSGGGPARSYPVGGLC 342
++L LVS IS + + F++ L+G WA ++ GG RS + LC
Sbjct: 192 VLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLKLCLLC 244
>gi|192807300 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform b [Homo sapiens]
Length = 2161
Score = 29.6 bits (65), Expect = 5.6
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 76 LMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITI-----GQAIV 130
L+ L + I+ S L MQL G +T R+ F+ + + I A++
Sbjct: 654 LLLLFLFIIIFSLLGMQLFGGK--FNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVM 711
Query: 131 YVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLL 164
Y YG P+ G +C+ II LF+ G +LL
Sbjct: 712 YDGIMAYGGPSSSGMIVCIYFII-LFICGNYILL 744
>gi|192807298 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform c [Homo sapiens]
Length = 2137
Score = 29.6 bits (65), Expect = 5.6
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 76 LMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITI-----GQAIV 130
L+ L + I+ S L MQL G +T R+ F+ + + I A++
Sbjct: 654 LLLLFLFIIIFSLLGMQLFGGK--FNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVM 711
Query: 131 YVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLL 164
Y YG P+ G +C+ II LF+ G +LL
Sbjct: 712 YDGIMAYGGPSSSGMIVCIYFII-LFICGNYILL 744
>gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform a [Homo sapiens]
Length = 2181
Score = 29.6 bits (65), Expect = 5.6
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 76 LMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITI-----GQAIV 130
L+ L + I+ S L MQL G +T R+ F+ + + I A++
Sbjct: 674 LLLLFLFIIIFSLLGMQLFGGK--FNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVM 731
Query: 131 YVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLL 164
Y YG P+ G +C+ II LF+ G +LL
Sbjct: 732 YDGIMAYGGPSSSGMIVCIYFII-LFICGNYILL 764
>gi|13540565 dendritic cell-specific transmembrane protein [Homo
sapiens]
Length = 470
Score = 29.6 bits (65), Expect = 5.6
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 167 ELLQKGYGLGSGISLF---IATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATR 223
E +Q YGL + +S+F ++ N +T+ FSP+ + + + +G V+++ + +AT
Sbjct: 146 EAIQWIYGLATPLSVFDDLVSWN--QTLAVSLFSPSHVLEAQLNDSKGEVLSVLYQMATT 203
Query: 224 TDKVRAL 230
T+ + +L
Sbjct: 204 TEVLSSL 210
>gi|21361449 solute carrier family 2 (facilitated glucose
transporter), member 8 [Homo sapiens]
Length = 477
Score = 28.9 bits (63), Expect = 9.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 106 PKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLL 165
P L + A FG ++T+G A V+ G D A G + LL+ FVAG V+
Sbjct: 59 PPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRA--GRKLSLLLCSVPFVAGFAVITA 116
Query: 166 DE---LLQKG---YGLGSGISLFIATNICETIVWKA 195
+ +L G GL G++ +A I + A
Sbjct: 117 AQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPA 152
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.143 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,198,888
Number of Sequences: 37866
Number of extensions: 627856
Number of successful extensions: 1514
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1509
Number of HSP's gapped (non-prelim): 19
length of query: 437
length of database: 18,247,518
effective HSP length: 105
effective length of query: 332
effective length of database: 14,271,588
effective search space: 4738167216
effective search space used: 4738167216
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.