Guide to the Human Genome
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Search of human proteins with 21717826

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
         (284 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                    569   e-162
gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]                   506   e-144
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                   493   e-139
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                    441   e-124
gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]                   430   e-121
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                   270   1e-72
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]                   207   6e-54
gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]                   207   8e-54
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]          135   4e-32
gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]        60   2e-09
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               32   0.48 
gi|188528675 slit homolog 1 [Homo sapiens]                             32   0.63 
gi|210147558 hypothetical protein LOC202051 [Homo sapiens]             29   5.4  
gi|118498362 kinectin 1 isoform b [Homo sapiens]                       28   9.1  
gi|118498356 kinectin 1 isoform a [Homo sapiens]                       28   9.1  
gi|118498368 kinectin 1 isoform c [Homo sapiens]                       28   9.1  
gi|33620775 kinectin 1 isoform a [Homo sapiens]                        28   9.1  

>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score =  569 bits (1466), Expect = e-162
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV 240
           EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
Sbjct: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV 240

Query: 241 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284
           RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 241 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284


>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
          Length = 261

 Score =  506 bits (1304), Expect = e-144
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129

Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD
Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 189

Query: 213 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 272
           AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS
Sbjct: 190 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 249

Query: 273 LEEEEFRLPELD 284
           LEEEEFRLPELD
Sbjct: 250 LEEEEFRLPELD 261


>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score =  493 bits (1268), Expect = e-139
 Identities = 251/284 (88%), Positives = 251/284 (88%), Gaps = 33/284 (11%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV 240
           EEPMDKVEE                                 ESGKIAVEYRPSEDIVGV
Sbjct: 181 EEPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGV 207

Query: 241 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284
           RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 208 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251


>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score =  441 bits (1134), Expect = e-124
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL 222
           EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL
Sbjct: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL 222


>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
          Length = 228

 Score =  430 bits (1106), Expect = e-121
 Identities = 219/252 (86%), Positives = 219/252 (86%), Gaps = 33/252 (13%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129

Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE                       
Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE----------------------- 166

Query: 213 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 272
                     ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS
Sbjct: 167 ----------ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 216

Query: 273 LEEEEFRLPELD 284
           LEEEEFRLPELD
Sbjct: 217 LEEEEFRLPELD 228


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score =  270 bits (690), Expect = 1e-72
 Identities = 133/134 (99%), Positives = 134/134 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKL 134
           YFGFNGCSKRIIK+
Sbjct: 121 YFGFNGCSKRIIKV 134



 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 249 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166


>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
          Length = 143

 Score =  207 bits (528), Expect = 6e-54
 Identities = 101/102 (99%), Positives = 102/102 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 134
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 111



 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 249 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 108 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 143


>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
          Length = 116

 Score =  207 bits (527), Expect = 8e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score =  135 bits (340), Expect = 4e-32
 Identities = 69/81 (85%), Positives = 70/81 (86%)

Query: 13  SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72
           SDKTLLVWELSSGPTA+ALH SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 84  SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143

Query: 73  AHRAQKACDRKQLFQKSPVKV 93
            H AQKAC RKQLFQ SPVKV
Sbjct: 144 VHGAQKACHRKQLFQTSPVKV 164


>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1  MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32
          MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1  MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 38  AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 96
           AF ++G++  V V    A    G YA +KF +   AHRA+ A   + +  ++P+K+  G
Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412



 Score = 30.4 bits (67), Expect = 1.8
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 15  KTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAH 74
           KTLL+  LS    AE L   LF  F +FG + S+R+   +     G  A + F   + A 
Sbjct: 139 KTLLISSLSPALPAEHLEDRLFHQFKRFGEI-SLRL---SHTPELGRVAYVNFRHPQDAR 194

Query: 75  RA-QKACDRKQLFQKSPVKV 93
            A Q A  R+ L    P+KV
Sbjct: 195 EARQHALARQLLLYDRPLKV 214


>gi|188528675 slit homolog 1 [Homo sapiens]
          Length = 1534

 Score = 32.0 bits (71), Expect = 0.63
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 123  GFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPS------CDCRSPG 176
            GF+GC + +    EL D  + + +  +VP  +   K +C   +  P+      C C +  
Sbjct: 1309 GFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGW 1368

Query: 177  IGL-VEEPMD 185
            +GL  ++P D
Sbjct: 1369 VGLHCDQPAD 1378


>gi|210147558 hypothetical protein LOC202051 [Homo sapiens]
          Length = 205

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)

Query: 190 GPLSFLMKRKTAQKLAIQKALSDAFQKLL-------IVVLESGKIAVEYRPSEDIVGVRC 242
           G +  L K+   +KLA +KALS    K+L        ++ +  +I       EDI+  + 
Sbjct: 86  GEVEVLSKQLEKEKLAFEKALSSVKSKVLQESSKKDQLITKCNEIESHIIKQEDILNGK- 144

Query: 243 EEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEE 277
           E E+  L QV      Q  Q    ++SDF +++++
Sbjct: 145 ENEIKELQQV----ISQQKQIFRNHMSDFRIQKQQ 175


>gi|118498362 kinectin 1 isoform b [Homo sapiens]
          Length = 1306

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 244  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1103 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1138


>gi|118498356 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 244  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


>gi|118498368 kinectin 1 isoform c [Homo sapiens]
          Length = 1300

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 244  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1097 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1132


>gi|33620775 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 244  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,004,319
Number of Sequences: 37866
Number of extensions: 474793
Number of successful extensions: 1124
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 20
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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