BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] (284 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] 569 e-162 gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens] 506 e-144 gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens] 493 e-139 gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens] 441 e-124 gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens] 430 e-121 gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens] 270 1e-72 gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens] 207 6e-54 gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens] 207 8e-54 gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] 135 4e-32 gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] 60 2e-09 gi|54607124 RNA binding motif protein 15B [Homo sapiens] 32 0.48 gi|188528675 slit homolog 1 [Homo sapiens] 32 0.63 gi|210147558 hypothetical protein LOC202051 [Homo sapiens] 29 5.4 gi|118498362 kinectin 1 isoform b [Homo sapiens] 28 9.1 gi|118498356 kinectin 1 isoform a [Homo sapiens] 28 9.1 gi|118498368 kinectin 1 isoform c [Homo sapiens] 28 9.1 gi|33620775 kinectin 1 isoform a [Homo sapiens] 28 9.1 >gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] Length = 284 Score = 569 bits (1466), Expect = e-162 Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180 Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV 240 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV Sbjct: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV 240 Query: 241 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD Sbjct: 241 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284 >gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens] Length = 261 Score = 506 bits (1304), Expect = e-144 Identities = 252/252 (100%), Positives = 252/252 (100%) Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69 Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129 Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 189 Query: 213 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 272 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS Sbjct: 190 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 249 Query: 273 LEEEEFRLPELD 284 LEEEEFRLPELD Sbjct: 250 LEEEEFRLPELD 261 >gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens] Length = 251 Score = 493 bits (1268), Expect = e-139 Identities = 251/284 (88%), Positives = 251/284 (88%), Gaps = 33/284 (11%) Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180 Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV 240 EEPMDKVEE ESGKIAVEYRPSEDIVGV Sbjct: 181 EEPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGV 207 Query: 241 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD Sbjct: 208 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251 >gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens] Length = 236 Score = 441 bits (1134), Expect = e-124 Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180 Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL 222 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL Sbjct: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL 222 >gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens] Length = 228 Score = 430 bits (1106), Expect = e-121 Identities = 219/252 (86%), Positives = 219/252 (86%), Gaps = 33/252 (13%) Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69 Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129 Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE----------------------- 166 Query: 213 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 272 ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS Sbjct: 167 ----------ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 216 Query: 273 LEEEEFRLPELD 284 LEEEEFRLPELD Sbjct: 217 LEEEEFRLPELD 228 >gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens] Length = 166 Score = 270 bits (690), Expect = 1e-72 Identities = 133/134 (99%), Positives = 134/134 (100%) Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60 Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120 Query: 121 YFGFNGCSKRIIKL 134 YFGFNGCSKRIIK+ Sbjct: 121 YFGFNGCSKRIIKV 134 Score = 77.8 bits (190), Expect = 1e-14 Identities = 34/36 (94%), Positives = 36/36 (100%) Query: 249 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284 +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD Sbjct: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166 >gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens] Length = 143 Score = 207 bits (528), Expect = 6e-54 Identities = 101/102 (99%), Positives = 102/102 (100%) Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69 Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 134 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+ Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 111 Score = 77.8 bits (190), Expect = 1e-14 Identities = 34/36 (94%), Positives = 36/36 (100%) Query: 249 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284 +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD Sbjct: 108 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 143 >gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens] Length = 116 Score = 207 bits (527), Expect = 8e-54 Identities = 101/101 (100%), Positives = 101/101 (100%) Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69 Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110 >gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] Length = 175 Score = 135 bits (340), Expect = 4e-32 Identities = 69/81 (85%), Positives = 70/81 (86%) Query: 13 SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72 SDKTLLVWELSSGPTA+ALH SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A Sbjct: 84 SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143 Query: 73 AHRAQKACDRKQLFQKSPVKV 93 H AQKAC RKQLFQ SPVKV Sbjct: 144 VHGAQKACHRKQLFQTSPVKV 164 >gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] Length = 236 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/32 (84%), Positives = 31/32 (96%) Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32 MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH Sbjct: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32 >gi|54607124 RNA binding motif protein 15B [Homo sapiens] Length = 890 Score = 32.3 bits (72), Expect = 0.48 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 38 AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 96 AF ++G++ V V A G YA +KF + AHRA+ A + + ++P+K+ G Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412 Score = 30.4 bits (67), Expect = 1.8 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 15 KTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAH 74 KTLL+ LS AE L LF F +FG + S+R+ + G A + F + A Sbjct: 139 KTLLISSLSPALPAEHLEDRLFHQFKRFGEI-SLRL---SHTPELGRVAYVNFRHPQDAR 194 Query: 75 RA-QKACDRKQLFQKSPVKV 93 A Q A R+ L P+KV Sbjct: 195 EARQHALARQLLLYDRPLKV 214 >gi|188528675 slit homolog 1 [Homo sapiens] Length = 1534 Score = 32.0 bits (71), Expect = 0.63 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 123 GFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPS------CDCRSPG 176 GF+GC + + EL D + + + +VP + K +C + P+ C C + Sbjct: 1309 GFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGW 1368 Query: 177 IGL-VEEPMD 185 +GL ++P D Sbjct: 1369 VGLHCDQPAD 1378 >gi|210147558 hypothetical protein LOC202051 [Homo sapiens] Length = 205 Score = 28.9 bits (63), Expect = 5.4 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%) Query: 190 GPLSFLMKRKTAQKLAIQKALSDAFQKLL-------IVVLESGKIAVEYRPSEDIVGVRC 242 G + L K+ +KLA +KALS K+L ++ + +I EDI+ + Sbjct: 86 GEVEVLSKQLEKEKLAFEKALSSVKSKVLQESSKKDQLITKCNEIESHIIKQEDILNGK- 144 Query: 243 EEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEE 277 E E+ L QV Q Q ++SDF +++++ Sbjct: 145 ENEIKELQQV----ISQQKQIFRNHMSDFRIQKQQ 175 >gi|118498362 kinectin 1 isoform b [Homo sapiens] Length = 1306 Score = 28.1 bits (61), Expect = 9.1 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 244 EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277 +E+H L+Q+ C +K E EG L S+E+EE Sbjct: 1103 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1138 >gi|118498356 kinectin 1 isoform a [Homo sapiens] Length = 1357 Score = 28.1 bits (61), Expect = 9.1 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 244 EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277 +E+H L+Q+ C +K E EG L S+E+EE Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161 >gi|118498368 kinectin 1 isoform c [Homo sapiens] Length = 1300 Score = 28.1 bits (61), Expect = 9.1 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 244 EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277 +E+H L+Q+ C +K E EG L S+E+EE Sbjct: 1097 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1132 >gi|33620775 kinectin 1 isoform a [Homo sapiens] Length = 1357 Score = 28.1 bits (61), Expect = 9.1 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 244 EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 277 +E+H L+Q+ C +K E EG L S+E+EE Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,004,319 Number of Sequences: 37866 Number of extensions: 474793 Number of successful extensions: 1124 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1109 Number of HSP's gapped (non-prelim): 20 length of query: 284 length of database: 18,247,518 effective HSP length: 101 effective length of query: 183 effective length of database: 14,423,052 effective search space: 2639418516 effective search space used: 2639418516 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.