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Search of human proteins with 215272376
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|215272376 thioredoxin-like 4B [Homo sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|215272376 thioredoxin-like 4B [Homo sapiens] 298 1e-81
gi|214832254 thioredoxin-like 4B [Homo sapiens] 298 1e-81
gi|8923475 thioredoxin-like 4B [Homo sapiens] 298 1e-81
gi|5729802 thioredoxin-like 4A [Homo sapiens] 112 2e-25
gi|169164452 PREDICTED: similar to hCG1643669 [Homo sapiens] 73 1e-13
gi|169164815 PREDICTED: similar to hCG1643669 [Homo sapiens] 73 1e-13
gi|169163509 PREDICTED: hypothetical protein LOC100131482 [Homo ... 73 1e-13
gi|95113651 glutaredoxin 3 [Homo sapiens] 39 0.002
gi|52487191 thioredoxin domain containing 4 (endoplasmic reticul... 30 0.98
gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens] 30 0.98
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 28 3.7
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 28 3.7
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 28 3.7
gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens] 28 3.7
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 28 3.7
gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens] 28 3.7
gi|24497453 nucleoporin 88kDa [Homo sapiens] 28 3.7
gi|28416925 purinergic receptor P2X3 [Homo sapiens] 27 6.4
gi|12408649 X-ray repair cross complementing protein 4 isoform 1... 27 8.3
gi|4507945 X-ray repair cross complementing protein 4 isoform 1 ... 27 8.3
gi|12408647 X-ray repair cross complementing protein 4 isoform 2... 27 8.3
>gi|215272376 thioredoxin-like 4B [Homo sapiens]
Length = 149
Score = 298 bits (762), Expect = 1e-81
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
Sbjct: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
Query: 61 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120
VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY
Sbjct: 61 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120
Query: 121 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149
RGAMRGKLIVQSPIDPKNIPKYDLLYQDI
Sbjct: 121 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149
>gi|214832254 thioredoxin-like 4B [Homo sapiens]
Length = 149
Score = 298 bits (762), Expect = 1e-81
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
Sbjct: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
Query: 61 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120
VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY
Sbjct: 61 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120
Query: 121 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149
RGAMRGKLIVQSPIDPKNIPKYDLLYQDI
Sbjct: 121 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149
>gi|8923475 thioredoxin-like 4B [Homo sapiens]
Length = 149
Score = 298 bits (762), Expect = 1e-81
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
Sbjct: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
Query: 61 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120
VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY
Sbjct: 61 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120
Query: 121 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149
RGAMRGKLIVQSPIDPKNIPKYDLLYQDI
Sbjct: 121 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149
>gi|5729802 thioredoxin-like 4A [Homo sapiens]
Length = 142
Score = 112 bits (279), Expect = 2e-25
Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Query: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
MS++LP L + +VDQAI S ++V+V+RFG D DP C+++D++L + + A IYL
Sbjct: 1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
Query: 61 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119
VD+ + + + +++ Y P TV FFF +H+ +D G+ ++ K + + KQ+ +D+IE +
Sbjct: 61 VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119
Query: 120 YRGAMRGKLIVQSPID 135
YRGA +G+ +V SP D
Sbjct: 120 YRGARKGRGLVVSPKD 135
>gi|169164452 PREDICTED: similar to hCG1643669 [Homo sapiens]
Length = 157
Score = 72.8 bits (177), Expect = 1e-13
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
MS +L L S +VDQAI + + V+RFG DP C+++D +L + A I+L
Sbjct: 1 MSHMLLHLHSSWQVDQAILPGEDCMAVIRFGHGWDPTCMKMDKVLYSIIEKVKDFAVIFL 60
Query: 61 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119
V++ + + + +++ Y P T+ FFF +H+ V G+ + K + + KQ+ +D+IE +
Sbjct: 61 VNITKVPDFNKMYEL-YDPCTIMFFFRNKHIMVVLGT-GNNKINWAMEDKQEMVDIIETV 118
Query: 120 YRGAMRGKLIVQSP 133
A+ G +V SP
Sbjct: 119 DCRALNGGDLVLSP 132
>gi|169164815 PREDICTED: similar to hCG1643669 [Homo sapiens]
Length = 157
Score = 72.8 bits (177), Expect = 1e-13
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
MS +L L S +VDQAI + + V+RFG DP C+++D +L + A I+L
Sbjct: 1 MSHMLLHLHSSWQVDQAILPGEDCMAVIRFGHGWDPTCMKMDKVLYSIIEKVKDFAVIFL 60
Query: 61 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119
V++ + + + +++ Y P T+ FFF +H+ V G+ + K + + KQ+ +D+IE +
Sbjct: 61 VNITKVPDFNKMYEL-YDPCTIMFFFRNKHIMVVLGT-GNNKINWAMEDKQEMVDIIETV 118
Query: 120 YRGAMRGKLIVQSP 133
A+ G +V SP
Sbjct: 119 DCRALNGGDLVLSP 132
>gi|169163509 PREDICTED: hypothetical protein LOC100131482 [Homo
sapiens]
Length = 157
Score = 72.8 bits (177), Expect = 1e-13
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
MS +L L S +VDQAI + + V+RFG DP C+++D +L + A I+L
Sbjct: 1 MSHMLLHLHSSWQVDQAILPGEDCMAVIRFGHGWDPTCMKMDKVLYSIIEKVKDFAVIFL 60
Query: 61 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119
V++ + + + +++ Y P T+ FFF +H+ V G+ + K + + KQ+ +D+IE +
Sbjct: 61 VNITKVPDFNKMYEL-YDPCTIMFFFRNKHIMVVLGT-GNNKINWAMEDKQEMVDIIETV 118
Query: 120 YRGAMRGKLIVQSP 133
A+ G +V SP
Sbjct: 119 DCRALNGGDLVLSP 132
>gi|95113651 glutaredoxin 3 [Homo sapiens]
Length = 335
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/108 (22%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Query: 10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVY 69
S + ++ ++ A+ +LV+ F P C Q+++++++ + +L +++ + L + +
Sbjct: 18 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL-EAEGVPEV 76
Query: 70 TQYFDISYIPSTVFFFNGQHMKVD----YGSPDHTKFVGSFKTKQDFI 113
++ ++IS +P+ +FF N Q K+D +P+ TK V + F+
Sbjct: 77 SEKYEISSVPTFLFFKNSQ--KIDRLDGAHAPELTKKVQRHASSGSFL 122
>gi|52487191 thioredoxin domain containing 4 (endoplasmic reticulum)
[Homo sapiens]
Length = 406
Score = 29.6 bits (65), Expect = 0.98
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 29 RFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQ 88
RF + P+ + D++ + + +++ VD DQ + Q + IS P+ F NG
Sbjct: 59 RFSQMLHPIFEEASDVIKEEFPNENQVV-FARVDCDQHSDIAQRYRISKYPTLKLFRNGM 117
Query: 89 HMKVDYGSPDHTKFVGSFKTKQ 110
MK +Y K + + +Q
Sbjct: 118 MMKREYRGQRSVKALADYIRQQ 139
>gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens]
Length = 1684
Score = 29.6 bits (65), Expect = 0.98
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 38 CLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSP 97
CL+L D+ + + D +K + +YLV + Y +++ + FFF + K Y
Sbjct: 270 CLKLGDLFFRVTDDRAKQSELYLVGM--ICYYGKHY-------STFFFQTKIRKWMYFDD 320
Query: 98 DHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIP 140
H K +G + D++ +G + L++ + DP+ P
Sbjct: 321 AHVKEIG-----PKWKDVVTKCIKGHYQPLLLLYA--DPQGTP 356
>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
Length = 2355
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 31 GRDEDPVCLQLDDILSKTSSDLSKMAAI---YLVDVDQTAVYTQYFDISY 77
GR+E P+ + +S DL +AA L+ D AV +Y+ I+Y
Sbjct: 1433 GREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITY 1482
>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
Length = 2477
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 31 GRDEDPVCLQLDDILSKTSSDLSKMAAI---YLVDVDQTAVYTQYFDISY 77
GR+E P+ + +S DL +AA L+ D AV +Y+ I+Y
Sbjct: 1524 GREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITY 1573
>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
Length = 2330
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 31 GRDEDPVCLQLDDILSKTSSDLSKMAAI---YLVDVDQTAVYTQYFDISY 77
GR+E P+ + +S DL +AA L+ D AV +Y+ I+Y
Sbjct: 1433 GREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITY 1482
>gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]
Length = 2296
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 31 GRDEDPVCLQLDDILSKTSSDLSKMAAI---YLVDVDQTAVYTQYFDISY 77
GR+E P+ + +S DL +AA L+ D AV +Y+ I+Y
Sbjct: 1433 GREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITY 1482
>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
Length = 2421
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 31 GRDEDPVCLQLDDILSKTSSDLSKMAAI---YLVDVDQTAVYTQYFDISY 77
GR+E P+ + +S DL +AA L+ D AV +Y+ I+Y
Sbjct: 1524 GREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITY 1573
>gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]
Length = 2176
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 31 GRDEDPVCLQLDDILSKTSSDLSKMAAI---YLVDVDQTAVYTQYFDISY 77
GR+E P+ + +S DL +AA L+ D AV +Y+ I+Y
Sbjct: 1433 GREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITY 1482
>gi|24497453 nucleoporin 88kDa [Homo sapiens]
Length = 741
Score = 27.7 bits (60), Expect = 3.7
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 59 YLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 118
Y + +TAV + ++ +P T+F NG+ V Y ++ + F+ I +
Sbjct: 230 YTASLGETAVAFDFGPLAAVPKTLFGQNGKDEVVAY------PLYILYENGETFLTYISL 283
Query: 119 IYRGAMRGKLIVQSPIDP 136
++ GKL+ P+ P
Sbjct: 284 LHSPGNIGKLLGPLPMHP 301
>gi|28416925 purinergic receptor P2X3 [Homo sapiens]
Length = 397
Score = 26.9 bits (58), Expect = 6.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 21 TAEKVLVLRFGRDEDPVC--LQLDDILSKTSSDLSKMA 56
TA + RF D+DP C L++ D++ D +K+A
Sbjct: 196 TARDMKTCRFHPDKDPFCPILRVGDVVKFAGQDFAKLA 233
>gi|12408649 X-ray repair cross complementing protein 4 isoform 1
[Homo sapiens]
Length = 334
Score = 26.6 bits (57), Expect = 8.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAA 57
L + +E ++ IK E + D DPV + D S+ +DLS +A+
Sbjct: 199 LNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDLSGLAS 248
>gi|4507945 X-ray repair cross complementing protein 4 isoform 1
[Homo sapiens]
Length = 334
Score = 26.6 bits (57), Expect = 8.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAA 57
L + +E ++ IK E + D DPV + D S+ +DLS +A+
Sbjct: 199 LNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDLSGLAS 248
>gi|12408647 X-ray repair cross complementing protein 4 isoform 2
[Homo sapiens]
Length = 336
Score = 26.6 bits (57), Expect = 8.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAA 57
L + +E ++ IK E + D DPV + D S+ +DLS +A+
Sbjct: 199 LNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDLSGLAS 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,850,115
Number of Sequences: 37866
Number of extensions: 181042
Number of successful extensions: 374
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 21
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.