Search of human proteins with 21396487

Search of human proteins with 21396487

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo
sapiens]
         (441 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens]    892   0.0  
gi|145701028 hypothetical protein LOC55471 isoform 3 [Homo sapiens]   439   e-123
gi|148596957 myosin binding protein C, cardiac [Homo sapiens]          31   2.6  
gi|21361732 ring finger protein 121 [Homo sapiens]                     31   2.6  
gi|93141204 methyltransferase like 2B [Homo sapiens]                   30   3.3  
gi|165932358 methyltransferase like 2A [Homo sapiens]                  30   3.3  
gi|148839316 NIMA-related kinase 4 [Homo sapiens]                      29   9.7  
gi|209413732 poliovirus receptor isoform delta [Homo sapiens]          29   9.7  
gi|209413730 poliovirus receptor isoform gamma [Homo sapiens]          29   9.7  
gi|209413728 poliovirus receptor isoform beta [Homo sapiens]           29   9.7  
gi|209413726 poliovirus receptor isoform alpha [Homo sapiens]          29   9.7  

>gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens]
          Length = 441

 Score =  892 bits (2304), Expect = 0.0
 Identities = 441/441 (100%), Positives = 441/441 (100%)

Query: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60
           MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA
Sbjct: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60

Query: 61  EYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQL 120
           EYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQL
Sbjct: 61  EYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQL 120

Query: 121 VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNA 180
           VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNA
Sbjct: 121 VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNA 180

Query: 181 GSPVYMKGVTKSGIPISWYRDLHDVPKGYSFYLAHEFFDVLPVHKFQKTPQGWREVFVDI 240
           GSPVYMKGVTKSGIPISWYRDLHDVPKGYSFYLAHEFFDVLPVHKFQKTPQGWREVFVDI
Sbjct: 181 GSPVYMKGVTKSGIPISWYRDLHDVPKGYSFYLAHEFFDVLPVHKFQKTPQGWREVFVDI 240

Query: 241 DPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGVIIEELSQRIALTGGAALVAD 300
           DPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGVIIEELSQRIALTGGAALVAD
Sbjct: 241 DPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGVIIEELSQRIALTGGAALVAD 300

Query: 301 YGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYLRRMAQGKVASLGPIKQHTFL 360
           YGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYLRRMAQGKVASLGPIKQHTFL
Sbjct: 301 YGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYLRRMAQGKVASLGPIKQHTFL 360

Query: 361 KNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGERFNFFALLPHQRLQGGRYQR 420
           KNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGERFNFFALLPHQRLQGGRYQR
Sbjct: 361 KNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGERFNFFALLPHQRLQGGRYQR 420

Query: 421 NARQSKPFASVVAGFSELAWQ 441
           NARQSKPFASVVAGFSELAWQ
Sbjct: 421 NARQSKPFASVVAGFSELAWQ 441


>gi|145701028 hypothetical protein LOC55471 isoform 3 [Homo sapiens]
          Length = 343

 Score =  439 bits (1129), Expect = e-123
 Identities = 216/221 (97%), Positives = 218/221 (98%)

Query: 221 LPVHKFQKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGV 280
           + VH  +KTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGV
Sbjct: 123 ISVHLVEKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGV 182

Query: 281 IIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYL 340
           IIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYL
Sbjct: 183 IIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYL 242

Query: 341 RRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGE 400
           RRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGE
Sbjct: 243 RRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGE 302

Query: 401 RFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ 441
           RFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ
Sbjct: 303 RFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ 343



 Score =  247 bits (631), Expect = 1e-65
 Identities = 129/156 (82%), Positives = 129/156 (82%), Gaps = 27/156 (17%)

Query: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60
           MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA
Sbjct: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60

Query: 61  EYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQL 120
           EYMKEVLTNPAK                           LLGIWFISEWMATGKSTAFQL
Sbjct: 61  EYMKEVLTNPAK---------------------------LLGIWFISEWMATGKSTAFQL 93

Query: 121 VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVE 156
           VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVE
Sbjct: 94  VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVE 129


>gi|148596957 myosin binding protein C, cardiac [Homo sapiens]
          Length = 1274

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 170 TKEKVPLERNAGSPVYMKGVT-KSGIPISWYRDLHDVPKGYSFYLAHEFF-DVLPVHKFQ 227
           +K+   +E  AGSP   +  T ++G+ + W R   D+     + LA E     L V +  
Sbjct: 13  SKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVG 72

Query: 228 KTPQGWREVFV-------DIDPQVSDKLRFVLAPSATPAEA 261
              QG   V         D+    ++K   +LAP+  PAEA
Sbjct: 73  PADQGSYAVIAGSSKVKFDLKVIEAEKAEPMLAPAPAPAEA 113


>gi|21361732 ring finger protein 121 [Homo sapiens]
          Length = 327

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 269 RDHVEVCPD-----------AGVIIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDH 317
           RD  E+C D           +G+  + LS  +    G  +  D   +G   +T+R  C+H
Sbjct: 194 RDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNH 253

Query: 318 KLHDVLI 324
             H+  I
Sbjct: 254 VFHEFCI 260


>gi|93141204 methyltransferase like 2B [Homo sapiens]
          Length = 378

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 113 GKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSE 163
           G S  ++++E+G G G  V  IL+     G  +  CD S   +E+ Q  SE
Sbjct: 177 GSSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSE 227


>gi|165932358 methyltransferase like 2A [Homo sapiens]
          Length = 378

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 113 GKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSE 163
           G S  ++++E+G G G  V  IL+     G  +  CD S   +E+ Q  SE
Sbjct: 177 GSSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSE 227


>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
          Length = 841

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 369 LKVLLDKSNE--PSVRQQLLQGYDMLMNPKKMGERFNFFALLPHQRLQGGRYQRNARQSK 426
           ++ +L K  E  PSVR  L Q Y        +  + +FF      +      +    QSK
Sbjct: 238 IRTMLSKRPEERPSVRSILRQPY--------IKRQISFFLEATKIKTSKNNIKNGDSQSK 289

Query: 427 PFASVVAGFSE 437
           PFA+VV+G +E
Sbjct: 290 PFATVVSGEAE 300


>gi|209413732 poliovirus receptor isoform delta [Homo sapiens]
          Length = 392

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 132 GDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTK 191
           G+   +F       ++ DI + ++   Q  +E+Q + LT E VP+ R          V+ 
Sbjct: 119 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR---------CVST 169

Query: 192 SGIP---ISWYRDLHDVP 206
            G P   I+W+ DL  +P
Sbjct: 170 GGRPPAQITWHSDLGGMP 187


>gi|209413730 poliovirus receptor isoform gamma [Homo sapiens]
          Length = 364

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 132 GDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTK 191
           G+   +F       ++ DI + ++   Q  +E+Q + LT E VP+ R          V+ 
Sbjct: 119 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR---------CVST 169

Query: 192 SGIP---ISWYRDLHDVP 206
            G P   I+W+ DL  +P
Sbjct: 170 GGRPPAQITWHSDLGGMP 187


>gi|209413728 poliovirus receptor isoform beta [Homo sapiens]
          Length = 372

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 132 GDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTK 191
           G+   +F       ++ DI + ++   Q  +E+Q + LT E VP+ R          V+ 
Sbjct: 119 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR---------CVST 169

Query: 192 SGIP---ISWYRDLHDVP 206
            G P   I+W+ DL  +P
Sbjct: 170 GGRPPAQITWHSDLGGMP 187


>gi|209413726 poliovirus receptor isoform alpha [Homo sapiens]
          Length = 417

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 132 GDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTK 191
           G+   +F       ++ DI + ++   Q  +E+Q + LT E VP+ R          V+ 
Sbjct: 119 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR---------CVST 169

Query: 192 SGIP---ISWYRDLHDVP 206
            G P   I+W+ DL  +P
Sbjct: 170 GGRPPAQITWHSDLGGMP 187


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,780,813
Number of Sequences: 37866
Number of extensions: 748770
Number of successful extensions: 1367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1361
Number of HSP's gapped (non-prelim): 12
length of query: 441
length of database: 18,247,518
effective HSP length: 105
effective length of query: 336
effective length of database: 14,271,588
effective search space: 4795253568
effective search space used: 4795253568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.