Search of human proteins with 21361959

Search of human proteins with 21361959

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361959 solute carrier family 35, member F5 [Homo sapiens]
         (523 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361959 solute carrier family 35, member F5 [Homo sapiens]       1041   0.0  
gi|27735127 solute carrier family 35, member F3 [Homo sapiens]         59   1e-08
gi|122937311 solute carrier family 35, member F4 [Homo sapiens]        57   3e-08
gi|31542943 solute carrier family 35, member F2 [Homo sapiens]         39   0.015
gi|4507553 tropomodulin 1 [Homo sapiens]                               35   0.22 
gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens]         33   0.49 
gi|24308163 fem-1 homolog a [Homo sapiens]                             30   7.0  
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i...    29   9.2  
gi|18375648 protein tyrosine phosphatase, non-receptor type 13 i...    29   9.2  
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i...    29   9.2  
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is...    29   9.2  
gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens]      29   9.2  

>gi|21361959 solute carrier family 35, member F5 [Homo sapiens]
          Length = 523

 Score = 1041 bits (2693), Expect = 0.0
 Identities = 523/523 (100%), Positives = 523/523 (100%)

Query: 1   MVPPRRHRGAGRPGVLSSSPPFRLRSAKFSGIALEDLRRALKTRLQMVCVFVMNRMNSQN 60
           MVPPRRHRGAGRPGVLSSSPPFRLRSAKFSGIALEDLRRALKTRLQMVCVFVMNRMNSQN
Sbjct: 1   MVPPRRHRGAGRPGVLSSSPPFRLRSAKFSGIALEDLRRALKTRLQMVCVFVMNRMNSQN 60

Query: 61  SGFTQRRRMALGIVILLLVDVIWVASSELTSYVFTQYNKPFFSTFAKTSMFVLYLLGFII 120
           SGFTQRRRMALGIVILLLVDVIWVASSELTSYVFTQYNKPFFSTFAKTSMFVLYLLGFII
Sbjct: 61  SGFTQRRRMALGIVILLLVDVIWVASSELTSYVFTQYNKPFFSTFAKTSMFVLYLLGFII 120

Query: 121 WKPWRQQCTRGLRGKHAAFFADAEGYFAACTTDTTMNSSLSEPLYVPVKFHDLPSEKPES 180
           WKPWRQQCTRGLRGKHAAFFADAEGYFAACTTDTTMNSSLSEPLYVPVKFHDLPSEKPES
Sbjct: 121 WKPWRQQCTRGLRGKHAAFFADAEGYFAACTTDTTMNSSLSEPLYVPVKFHDLPSEKPES 180

Query: 181 TNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSYPVKEQESILKTVGKLTATQV 240
           TNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSYPVKEQESILKTVGKLTATQV
Sbjct: 181 TNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSYPVKEQESILKTVGKLTATQV 240

Query: 241 AKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSK 300
           AKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSK
Sbjct: 241 AKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSK 300

Query: 301 LLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIP 360
           LLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIP
Sbjct: 301 LLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIP 360

Query: 361 MFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKVVLMCIIINGLIGTVLSEFLWLWGCF 420
           MFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKVVLMCIIINGLIGTVLSEFLWLWGCF
Sbjct: 361 MFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKVVLMCIIINGLIGTVLSEFLWLWGCF 420

Query: 421 LTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPV 480
           LTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPV
Sbjct: 421 LTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPV 480

Query: 481 MVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVSQEDGAS 523
           MVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVSQEDGAS
Sbjct: 481 MVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVSQEDGAS 523


>gi|27735127 solute carrier family 35, member F3 [Homo sapiens]
          Length = 490

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 51/237 (21%), Positives = 105/237 (44%), Gaps = 18/237 (7%)

Query: 247 FCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVIL 306
           F  +W L N  Y  A+       V++L   +  F  +L+ +      DRF   +++A IL
Sbjct: 226 FGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLR---DRFMGVRIVAAIL 282

Query: 307 SIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFV 366
           +I G+V++  A          +G    +A A + A+Y V+ K  +      +  +F   +
Sbjct: 283 AIAGIVMMTYADGFH--SHSVIGIALVVASASMSALYKVLFKLLLGSAKFGEAALFLSIL 340

Query: 367 GLFNLLLLWPGFFLLHYT------GFEDFEFPNKVVLMCIIINGLIGTVLSEFLWLWGCF 420
           G+FN+L +     +L++T       F+D  + N      +++      VL+     +G  
Sbjct: 341 GVFNILFITCIPIILYFTKVEYWSSFDDIPWGNLCGFSVLLLT--FNIVLN-----FGIA 393

Query: 421 LTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNW 477
           +T   + +L + L+IP++ + D    ++ F+ +     I +   F ++ L   ++ W
Sbjct: 394 VTYPTLMSLGIVLSIPVNAVIDHYTSQIVFNGVRVIAIIIIGLGFLLLLLPEEWDVW 450



 Score = 33.9 bits (76), Expect = 0.37
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 65  QRRRMALGIVILLLVDVIWVASSELTSYVFTQYNKPFFSTFAKTS----MFVLYLLGFII 120
           Q +++  G+ ++L V   W  S++L    F +++ PF  T+  T+     F LY +G + 
Sbjct: 131 QLKKIFWGVAVVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYVGHVC 190

Query: 121 WKPWRQQCTRGLRGKHAAFFAD 142
            K   +Q  +    +   FF D
Sbjct: 191 -KSTEKQSVKQRYRECCRFFGD 211


>gi|122937311 solute carrier family 35, member F4 [Homo sapiens]
          Length = 521

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 15/286 (5%)

Query: 198 NIMEIRQLPSSHALEAKLSRMSYPVKEQESILKTVGK--LTATQVAKISFFFCFVWFLAN 255
           NIM      S H   A+  +   P+K+     +  G+  LT     K +  F  +W L N
Sbjct: 206 NIMFFPVYYSGHLATAQEKQS--PMKKFRECSRIFGEDGLTLKLFLKRTAPFSILWTLTN 263

Query: 256 LSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVN 315
             Y  AL       V+ L   +  F  +L+ +      DRF   +++A I++I G+V+  
Sbjct: 264 YLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLK---DRFMGVRIVAAIMAITGIVM-- 318

Query: 316 LAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLW 375
           +A ++       +G  +++  A   A+Y V+ K  +   +  +   F   +G FNL+ + 
Sbjct: 319 MAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFIS 378

Query: 376 PGFFLLHYTGFEDFEFPNKVVLMCIIINGLIGTVLS-EFLWLWGCFLTSSLIGTLALSLT 434
               +L++T  E +     +   C+   G+ G  L+   L   G  LT  ++ ++   L+
Sbjct: 379 FTPVILYFTKVEHWSSFAALPWGCLC--GMAGLWLAFNILVNVGVVLTYPILISIGTVLS 436

Query: 435 IPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPV 480
           +P +   D+  Q+V F+ +  A  I +   F ++ L      WD +
Sbjct: 437 VPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLL---PEEWDEI 479



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)

Query: 72  GIVILLLVDVIWVASSELTSYVFTQYNKPFFSTFAKTSMFVLY 114
           G++I+L V   WV ++++    +  +  PFF T+  T+  +++
Sbjct: 167 GLLIILSVSSSWVGTTQIVKITYKNFYCPFFMTWFSTNWNIMF 209


>gi|31542943 solute carrier family 35, member F2 [Homo sapiens]
          Length = 374

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 295 RFTLSKLLAV---ILSIGGVVLVN-LAGSEKPAGRDT-VGSIWSLAGAMLYAVYIVM--- 346
           R+ +   +AV   +L +G +V  + LAG E  +G D  +G I  L GA LYA+  V    
Sbjct: 159 RYRVIHFIAVAVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAISNVCEEY 218

Query: 347 IKRKVDREDKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKVVLMCI 400
           I +K+ R++      F G VGLF  ++      ++ Y       +  K+ L+ +
Sbjct: 219 IVKKLSRQE------FLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFV 266


>gi|4507553 tropomodulin 1 [Homo sapiens]
          Length = 359

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 146 YFAACTTDTTMNSSLSEPLYVPVKFHDLPSEKPESTNID------TEKTPKKSRVRFSNI 199
           Y+ A ++ + MN      +  P ++  +P E+P ST+++          PK   V  +NI
Sbjct: 146 YYQALSSSSIMNKEGLNSVIKPTQYKPVPDEEPNSTDVEETLERIKNNDPKLEEVNLNNI 205

Query: 200 MEIRQLPSSHALEAKLSRMSYPVK 223
             I  +P+  A    L   SY  K
Sbjct: 206 RNI-PIPTLKAYAEALKENSYVKK 228


>gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens]
          Length = 458

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 277 SGLFTLILAAVFPSNSGDRFTLSKLLAVIL-SIGGVVLVNLAGSEKPAGRDTVGSIWSLA 335
           +G   +   AV       +  L  LL V+L  I   VL++L G     G  T+ +  +  
Sbjct: 133 AGAVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLHLLGVRDAGGSMTIHTFGAYF 192

Query: 336 GAMLYAV-YIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLWPGF 378
           G +L  V Y   +++   R+  +     F  +G   L + WP F
Sbjct: 193 GLVLSRVLYRPQLEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSF 236


>gi|24308163 fem-1 homolog a [Homo sapiens]
          Length = 669

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 220 YPVKEQESILKTVGKLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSS-TSG 278
           Y +  Q+S L+ +  +TA+    +SF   F + L + + + +L  TQ+   +++   T G
Sbjct: 415 YALDMQQSNLEPLSPMTASSF--LSFAELFSYVLQDRAAKGSLG-TQIGFADLMGVLTKG 471

Query: 279 LFTLILAAVFPSNSGDRFTLSKLLAVILSI 308
           +  +  A   P   GD    +K LA+IL +
Sbjct: 472 VREVERALQLPREPGDSAQFTKALAIILHL 501


>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
           isoform 4 [Homo sapiens]
          Length = 2490

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 178 PESTNIDTEKTPKKSRVRFSN---------------IMEIRQLPSSHALEAKLSRM 218
           PE+  + T  TP+K   R+S+               I   R+LP+S A+ + L R+
Sbjct: 326 PEAVTVRTSTTPRKKEARYSDGSIALDIFGPQKMDPIYHTRELPTSSAISSALDRI 381


>gi|18375648 protein tyrosine phosphatase, non-receptor type 13
           isoform 3 [Homo sapiens]
          Length = 2294

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 178 PESTNIDTEKTPKKSRVRFSN---------------IMEIRQLPSSHALEAKLSRM 218
           PE+  + T  TP+K   R+S+               I   R+LP+S A+ + L R+
Sbjct: 326 PEAVTVRTSTTPRKKEARYSDGSIALDIFGPQKMDPIYHTRELPTSSAISSALDRI 381


>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
           isoform 1 [Homo sapiens]
          Length = 2485

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 178 PESTNIDTEKTPKKSRVRFSN---------------IMEIRQLPSSHALEAKLSRM 218
           PE+  + T  TP+K   R+S+               I   R+LP+S A+ + L R+
Sbjct: 326 PEAVTVRTSTTPRKKEARYSDGSIALDIFGPQKMDPIYHTRELPTSSAISSALDRI 381


>gi|5453992 protein tyrosine phosphatase, non-receptor type 13
           isoform 2 [Homo sapiens]
          Length = 2466

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 178 PESTNIDTEKTPKKSRVRFSN---------------IMEIRQLPSSHALEAKLSRM 218
           PE+  + T  TP+K   R+S+               I   R+LP+S A+ + L R+
Sbjct: 326 PEAVTVRTSTTPRKKEARYSDGSIALDIFGPQKMDPIYHTRELPTSSAISSALDRI 381


>gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens]
          Length = 454

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 13 PGVLSSSPPFRLRSAKFSGIALEDLRRAL 41
          PG L  SPPF + S  F G+   DL + +
Sbjct: 30 PGALRGSPPFEMLSPSFRGLGQPDLPKEM 58


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,814,752
Number of Sequences: 37866
Number of extensions: 711389
Number of successful extensions: 2341
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2326
Number of HSP's gapped (non-prelim): 17
length of query: 523
length of database: 18,247,518
effective HSP length: 107
effective length of query: 416
effective length of database: 14,195,856
effective search space: 5905476096
effective search space used: 5905476096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.