Guide to the Human Genome
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Name: PIGV Sequence: fasta or formatted (493aa) NCBI GI: 21361771
Description:

phosphatidylinositol glycan class V

Referenced in:

GPI Anchoring

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         39           2
 C cysteine            2.4         12           1
 D aspartate           2.2         11           1
 E glutamate           3.2         16           1
 F phenylalanine       7.9         39           2
 G glycine             6.1         30           2
 H histidine           3.2         16           2
 I isoleucine          2.6         13           2
 K lysine              2.4         12           1
 L leucine            18.3         90           3
 M methionine          2.0         10           1
 N asparagine          2.6         13           2
 P proline             7.3         36           2
 Q glutamine           3.9         19           1
 R arginine            3.7         18           1
 S serine              6.1         30           2
 T threonine           4.3         21           2
 V valine              6.9         34           2
 W tryptophan          2.8         14           1
 Y tyrosine            4.1         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylinositol glycan class V 
HACL1                 0.007   2-hydroxyphytanoyl-CoA lyase 
PXDNL                 0.007   peroxidasin homolog-like 
SLC17A2               0.007   solute carrier family 17 (sodium phosphate), member 2...
S1PR4                 0.006   sphingosine-1-phosphate receptor 4 precursor 
WDFY4                 0.005   WDFY family member 4 
GPR156                0.005   G protein-coupled receptor 156 
LOC389333             0.004   hypothetical protein LOC389333 
A3GALT2               0.004   alpha 1,3-galactosyltransferase 2 
ARFGEF1               0.004   brefeldin A-inhibited guanine nucleotide-exchange pr...
SIDT2                 0.004   SID1 transmembrane family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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