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Search of human proteins with 21361523
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361523 GPN-loop GTPase 3 [Homo sapiens]
(284 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361523 GPN-loop GTPase 3 [Homo sapiens] 577 e-165
gi|88759337 ATP binding domain 1 family, member B [Homo sapiens] 206 2e-53
gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens] 94 2e-19
gi|223005899 GPN-loop GTPase 1 isoform b [Homo sapiens] 77 2e-14
gi|223005901 GPN-loop GTPase 1 isoform c [Homo sapiens] 56 3e-08
gi|223005903 GPN-loop GTPase 1 isoform d [Homo sapiens] 41 0.001
gi|4885237 forkhead box C2 [Homo sapiens] 32 0.63
gi|119395716 forkhead box C1 [Homo sapiens] 32 0.83
gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens] 30 2.4
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 30 2.4
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 30 2.4
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 30 2.4
gi|148762985 pseudouridylate synthase 7 homolog (S. cerevisiae)-... 29 4.1
gi|148762948 pseudouridylate synthase 7 homolog (S. cerevisiae)-... 29 4.1
gi|148762961 pseudouridylate synthase 7 homolog (S. cerevisiae)-... 29 4.1
gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens] 29 5.4
gi|5803029 ATP/GTP-binding protein isoform 1 [Homo sapiens] 29 5.4
gi|221219056 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... 29 5.4
gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... 29 5.4
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 28 7.0
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 28 9.1
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 28 9.1
>gi|21361523 GPN-loop GTPase 3 [Homo sapiens]
Length = 284
Score = 577 bits (1488), Expect = e-165
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MPRYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEV 60
MPRYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEV
Sbjct: 1 MPRYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEV 60
Query: 61 DDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILFDCPGQIELYTHLPVM 120
DDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILFDCPGQIELYTHLPVM
Sbjct: 61 DDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILFDCPGQIELYTHLPVM 120
Query: 121 KQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLS 180
KQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLS
Sbjct: 121 KQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLS 180
Query: 181 KKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEES 240
KKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEES
Sbjct: 181 KKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEES 240
Query: 241 MNIALQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQECQDE 284
MNIALQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQECQDE
Sbjct: 241 MNIALQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQECQDE 284
>gi|88759337 ATP binding domain 1 family, member B [Homo sapiens]
Length = 310
Score = 206 bits (523), Expect = 2e-53
Identities = 106/254 (41%), Positives = 156/254 (61%), Gaps = 5/254 (1%)
Query: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63
+ Q V+GP GSGK+TYC M + AL R V VVNLDPA E Y D+ EL+ + DV
Sbjct: 10 FGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLGDV 69
Query: 64 MEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILFDCPGQIELYTHLPVMKQL 123
M D+LR GPNGGL++CMEY N DWL L + Y LFDCPGQ+EL TH ++ +
Sbjct: 70 M--DALRLGPNGGLLYCMEYLEANLDWLRAKLDPLRGHYFLFDCPGQVELCTHHGALRSI 127
Query: 124 VQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKA 183
Q+ QW+ R+ V LVDS + + KFIS + +L+ M+ +E+P +N+++KMDL+
Sbjct: 128 FSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSKMDLIEHYG 187
Query: 184 KK--EIEKFLDP-DMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEES 240
K ++ + + D+ LL+ SD + +++L + + LI+DYS+V F+P + D+ES
Sbjct: 188 KLAFNLDYYTEVLDLSYLLDHLASDPFFRHYRQLNEKLVQLIEDYSLVSFIPLNIQDKES 247
Query: 241 MNIALQHIDFAIQY 254
+ LQ +D A Y
Sbjct: 248 IQRVLQAVDKANGY 261
>gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens]
Length = 388
Score = 93.6 bits (231), Expect = 2e-19
Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 12/226 (5%)
Query: 7 LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMED 66
LV+G AGSGK+T+ + H A V+NLDPA + DIR+ ++ +VM+
Sbjct: 37 LVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQ 96
Query: 67 DSLRFGPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLV 124
L GPNGG+V + FA FD + + ++ Y+L D PGQIE++T +
Sbjct: 97 YGL--GPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIIT 154
Query: 125 QQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAK 184
+ L F ++++D+ F+S +L A S + ++P + +M K D++
Sbjct: 155 EALAS-SFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 213
Query: 185 KEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDD-YSMVR 229
E + + +L +++T LT+++ ++D+ YS +R
Sbjct: 214 VEWMQDFEAFQDALNQETT------YVSNLTRSMSLVLDEFYSSLR 253
>gi|223005899 GPN-loop GTPase 1 isoform b [Homo sapiens]
Length = 362
Score = 77.0 bits (188), Expect = 2e-14
Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 12/217 (5%)
Query: 16 KSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMEDDSLRFGPNG 75
K + + H A V+NLDPA + DIR+ ++ +VM+ L GPNG
Sbjct: 20 KLRFSERLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGL--GPNG 77
Query: 76 GLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLVQQLEQWEFR 133
G+V + FA FD + + ++ Y+L D PGQIE++T + + L F
Sbjct: 78 GIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALAS-SFP 136
Query: 134 VCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDP 193
++++D+ F+S +L A S + ++P + +M K D++ E + +
Sbjct: 137 TVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEA 196
Query: 194 DMYSLLEDSTSDLRSKKFKKLTKAICGLIDD-YSMVR 229
+L +++T LT+++ ++D+ YS +R
Sbjct: 197 FQDALNQETT------YVSNLTRSMSLVLDEFYSSLR 227
>gi|223005901 GPN-loop GTPase 1 isoform c [Homo sapiens]
Length = 295
Score = 56.2 bits (134), Expect = 3e-08
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 72 GPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLVQQLEQ 129
GPNGG+V + FA FD + + ++ Y+L D PGQIE++T + + L
Sbjct: 7 GPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALAS 66
Query: 130 WEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEK 189
F ++++D+ F+S +L A S + ++P + +M K D++ E +
Sbjct: 67 -SFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQ 125
Query: 190 FLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDD-YSMVR 229
+ +L +++T LT+++ ++D+ YS +R
Sbjct: 126 DFEAFQDALNQETT------YVSNLTRSMSLVLDEFYSSLR 160
>gi|223005903 GPN-loop GTPase 1 isoform d [Homo sapiens]
Length = 279
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 102 YILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSA 161
Y+L D PGQIE++T + + L F ++++D+ F+S +L A S
Sbjct: 23 YVLIDTPGQIEVFTWSASGTIITEALAS-SFPTVVIYVMDTSRSTNPVTFMSNMLYACSI 81
Query: 162 MISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGL 221
+ ++P + +M K D++ E + + +L +++T LT+++ +
Sbjct: 82 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETT------YVSNLTRSMSLV 135
Query: 222 IDD-YSMVR 229
+D+ YS +R
Sbjct: 136 LDEFYSSLR 144
>gi|4885237 forkhead box C2 [Homo sapiens]
Length = 501
Score = 32.0 bits (71), Expect = 0.63
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 114 YTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIM 173
Y+++ ++ +Q + + + G++ QF+++ F F I +
Sbjct: 75 YSYIALITMAIQNAPEKKITLNGIY----QFIMDRFPFYRENKQGWQNSIRHNLSLNECF 130
Query: 174 TKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKK 213
K+ KK K LDPD Y++ E+ + R ++FKK
Sbjct: 131 VKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKK 170
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 31.6 bits (70), Expect = 0.83
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 114 YTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIM 173
Y+++ ++ +Q + + G++ QF+++ F F I +
Sbjct: 81 YSYIALITMAIQNAPDKKITLNGIY----QFIMDRFPFYRDNKQGWQNSIRHNLSLNECF 136
Query: 174 TKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKK 213
K+ KK K LDPD Y++ E+ + R ++FKK
Sbjct: 137 VKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKK 176
>gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens]
Length = 962
Score = 30.0 bits (66), Expect = 2.4
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 197 SLLEDSTSDLRS-KKFKKLTKAICGLIDDYSMVRFLPYDQSDEESMNIALQHIDFAIQYG 255
+LL+D + +R+ K K + G+ ++ L D+SD E + AL + I
Sbjct: 34 TLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDILYNIISNE 93
Query: 256 EDLEFKEPKEREDES-SSMFDEYFQECQD 283
E+ E +E R+ E S F E F + Q+
Sbjct: 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQE 122
>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4470
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 3 RYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAA 43
R++ ++G AGSGKS ++ + + L R V+LDP A
Sbjct: 2130 RHSVFIVGNAGSGKSQVLKSLNKTYQNLKRKPVAVDLDPKA 2170
>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 3 RYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAA 43
R++ ++G AGSGKS ++ + + L R V+LDP A
Sbjct: 2107 RHSVFIVGNAGSGKSQVLKSLNKTYQNLKRKPVAVDLDPKA 2147
>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 3 RYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAA 43
R++ ++G AGSGKS ++ + + L R V+LDP A
Sbjct: 2107 RHSVFIVGNAGSGKSQVLKSLNKTYQNLKRKPVAVDLDPKA 2147
>gi|148762985 pseudouridylate synthase 7 homolog (S.
cerevisiae)-like [Homo sapiens]
Length = 701
Score = 29.3 bits (64), Expect = 4.1
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 174 TKMDLLSKKAKKE--IEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFL 231
T +D SK +K + FLD + LL + D+R K K + GL ++S+ R L
Sbjct: 110 TIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSK--TELIGLPPEFSIGRIL 167
Query: 232 PYDQSDEESMNIAL-QHIDFAIQYGEDLE 259
D++ S++ A+ Q F + G++ E
Sbjct: 168 --DKNQRASLHSAIRQKFPFLVTVGKNSE 194
>gi|148762948 pseudouridylate synthase 7 homolog (S.
cerevisiae)-like [Homo sapiens]
Length = 701
Score = 29.3 bits (64), Expect = 4.1
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 174 TKMDLLSKKAKKE--IEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFL 231
T +D SK +K + FLD + LL + D+R K K + GL ++S+ R L
Sbjct: 110 TIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSK--TELIGLPPEFSIGRIL 167
Query: 232 PYDQSDEESMNIAL-QHIDFAIQYGEDLE 259
D++ S++ A+ Q F + G++ E
Sbjct: 168 --DKNQRASLHSAIRQKFPFLVTVGKNSE 194
>gi|148762961 pseudouridylate synthase 7 homolog (S.
cerevisiae)-like [Homo sapiens]
Length = 701
Score = 29.3 bits (64), Expect = 4.1
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 174 TKMDLLSKKAKKE--IEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFL 231
T +D SK +K + FLD + LL + D+R K K + GL ++S+ R L
Sbjct: 110 TIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSK--TELIGLPPEFSIGRIL 167
Query: 232 PYDQSDEESMNIAL-QHIDFAIQYGEDLE 259
D++ S++ A+ Q F + G++ E
Sbjct: 168 --DKNQRASLHSAIRQKFPFLVTVGKNSE 194
>gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]
Length = 4471
Score = 28.9 bits (63), Expect = 5.4
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 1 MPRYAQLVMGPAGSGKSTYCATMVQHCEALN----------RSVQVVN----LDPAAEHF 46
+ R+ +V+GP GKS T+ Q L ++V V+ LDP +
Sbjct: 2104 LTRHTTMVVGPTRGGKSVVINTLCQAQTKLGLTTKLYILNPKAVSVIELYGILDPTTRDW 2163
Query: 47 NYSVMADI-RELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILF 105
V+++I RE+ + D E + F + + W+EN ++D+ +L
Sbjct: 2164 TDGVLSNIFREINKPTDKKERKYILFDGDVDAL-----------WVENMNSVMDDNRLLT 2212
Query: 106 DCPGQ-IELYTHLPVMKQL--VQQLEQWEFRVCGVFLVD 141
G+ I L H ++ ++ +Q CG+ VD
Sbjct: 2213 LANGERIRLQAHCALLFEVGDLQYASPATVSRCGMVYVD 2251
>gi|5803029 ATP/GTP-binding protein isoform 1 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 7 LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLD 40
+V+GP GKST C ++ + L R V LD
Sbjct: 118 MVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELD 151
>gi|221219056 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform 2
[Homo sapiens]
Length = 438
Score = 28.9 bits (63), Expect = 5.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 181 KKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEES 240
KKA ++ PD +S KKFK++ +A L D R+ DEE
Sbjct: 342 KKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG 401
Query: 241 MNI 243
MN+
Sbjct: 402 MNM 404
>gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform 1
[Homo sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 5.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 181 KKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEES 240
KKA ++ PD +S KKFK++ +A L D R+ DEE
Sbjct: 398 KKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG 457
Query: 241 MNI 243
MN+
Sbjct: 458 MNM 460
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 28.5 bits (62), Expect = 7.0
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 7 LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIE 59
L++GP G+GK++ +++Q + SV VVN+ +A+ + +V + I +E
Sbjct: 2413 LLVGPVGTGKTSIAQSVLQSLPSSQWSVLVVNM--SAQTTSNNVQSIIESRVE 2463
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 28.1 bits (61), Expect = 9.1
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 34/160 (21%)
Query: 147 ESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLD--PDM--YSLLEDS 202
E +F+S I L+++ +L P++N + K++L + +E + P++ +L +
Sbjct: 42 EELEFLSTINVGLTSIANL--PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
Query: 203 TSDLRS-------KKFKKLTKAICGL--IDDY--SMVRFLP-------YDQSDEESMNIA 244
DL + + K L C + ++DY ++ + LP YD+ D+E+ +
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAPD-- 157
Query: 245 LQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQECQDE 284
A Y E L+ E EDE +DE Q +DE
Sbjct: 158 ----SDAEGYVEGLD----DEEEDEDEEEYDEDAQVVEDE 189
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 28.1 bits (61), Expect = 9.1
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 160 SAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKK 213
S SLEI N+ K +LLS K + EIE+ + +++T+ L+ KK KK
Sbjct: 744 SLRASLEIELSNL--KAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKK 795
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,224,645
Number of Sequences: 37866
Number of extensions: 415403
Number of successful extensions: 1209
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 29
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.