Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 213385323
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|213385323 anaphase-promoting complex subunit 5 isoform b
[Homo sapiens]
(643 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|213385323 anaphase-promoting complex subunit 5 isoform b [Hom... 1263 0.0
gi|20127553 anaphase-promoting complex subunit 5 isoform a [Homo... 1254 0.0
gi|21735569 claspin [Homo sapiens] 35 0.28
gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens] 33 0.62
gi|130980075 centromere protein J [Homo sapiens] 33 0.81
gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo sap... 33 0.81
gi|225637489 hypothetical protein LOC54777 [Homo sapiens] 32 1.4
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens] 32 1.4
gi|51477718 TATA box binding protein-associated factor, RNA poly... 32 1.4
gi|110347427 ubiquitin specific protease 34 [Homo sapiens] 32 1.4
gi|110611919 UDP glucuronosyltransferase 2 family, polypeptide A... 32 1.8
gi|4758980 pituitary tumor-transforming protein 1 [Homo sapiens] 32 2.4
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 32 2.4
gi|154091334 JAW1-related protein isoform c [Homo sapiens] 32 2.4
gi|154091332 JAW1-related protein isoform b [Homo sapiens] 32 2.4
gi|148728182 JAW1-related protein isoform b [Homo sapiens] 32 2.4
gi|217416374 hypothetical protein LOC92749 [Homo sapiens] 32 2.4
gi|62899047 RAD50 interactor 1 [Homo sapiens] 31 3.1
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 31 3.1
gi|21735548 centrosomal protein 2 [Homo sapiens] 31 4.0
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 31 4.0
gi|7656849 acyl-Coenzyme A dehydrogenase family, member 8 [Homo ... 31 4.0
gi|222537714 taxilin beta [Homo sapiens] 30 5.3
gi|226693318 adenosine deaminase-like isoform 1 [Homo sapiens] 30 5.3
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 30 5.3
gi|21359945 chromosome condensation protein G [Homo sapiens] 30 5.3
gi|68077164 Yeast Sps1/Ste20-related kinase 4 isoform 1 [Homo sa... 30 5.3
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 30 5.3
gi|221139761 zinc finger protein 853 [Homo sapiens] 30 6.9
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 30 6.9
>gi|213385323 anaphase-promoting complex subunit 5 isoform b [Homo
sapiens]
Length = 643
Score = 1263 bits (3268), Expect = 0.0
Identities = 643/643 (100%), Positives = 643/643 (100%)
Query: 1 MAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQ 60
MAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQ
Sbjct: 1 MAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQ 60
Query: 61 QYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQ 120
QYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQ
Sbjct: 61 QYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQ 120
Query: 121 ASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFD 180
ASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFD
Sbjct: 121 ASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFD 180
Query: 181 RLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVC 240
RLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVC
Sbjct: 181 RLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVC 240
Query: 241 LQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLPRAFAGKTANKLMDALKDSDLLHWKH 300
LQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLPRAFAGKTANKLMDALKDSDLLHWKH
Sbjct: 241 LQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLPRAFAGKTANKLMDALKDSDLLHWKH 300
Query: 301 SLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCH 360
SLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCH
Sbjct: 301 SLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCH 360
Query: 361 LAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLV 420
LAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLV
Sbjct: 361 LAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLV 420
Query: 421 TGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYW 480
TGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYW
Sbjct: 421 TGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYW 480
Query: 481 RSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPIL 540
RSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPIL
Sbjct: 481 RSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPIL 540
Query: 541 ADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRD 600
ADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRD
Sbjct: 541 ADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRD 600
Query: 601 VVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 643
VVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL
Sbjct: 601 VVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 643
>gi|20127553 anaphase-promoting complex subunit 5 isoform a [Homo
sapiens]
Length = 755
Score = 1254 bits (3244), Expect = 0.0
Identities = 643/656 (98%), Positives = 643/656 (98%), Gaps = 13/656 (1%)
Query: 1 MAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQ 60
MAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQ
Sbjct: 100 MAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQ 159
Query: 61 QYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQ 120
QYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQ
Sbjct: 160 QYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQ 219
Query: 121 ASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFD 180
ASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFD
Sbjct: 220 ASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFD 279
Query: 181 RLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVC 240
RLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVC
Sbjct: 280 RLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVC 339
Query: 241 LQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLP-------------RAFAGKTANKLM 287
LQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLP RAFAGKTANKLM
Sbjct: 340 LQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLM 399
Query: 288 DALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQ 347
DALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQ
Sbjct: 400 DALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQ 459
Query: 348 QNNTESFAVALCHLAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRA 407
QNNTESFAVALCHLAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRA
Sbjct: 460 QNNTESFAVALCHLAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRA 519
Query: 408 MNDGKYHLADSLVTGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEM 467
MNDGKYHLADSLVTGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEM
Sbjct: 520 MNDGKYHLADSLVTGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEM 579
Query: 468 VISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQ 527
VISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQ
Sbjct: 580 VISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQ 639
Query: 528 ALSLLHMAIEPILADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKN 587
ALSLLHMAIEPILADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKN
Sbjct: 640 ALSLLHMAIEPILADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKN 699
Query: 588 YFAKVDCKERIRDVVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 643
YFAKVDCKERIRDVVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL
Sbjct: 700 YFAKVDCKERIRDVVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSHGVPLINHL 755
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 34.7 bits (78), Expect = 0.28
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 67 EKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPL---SQKQAEFFLSQQASL 123
E++ E+ +M S ++GE K+EKEE + + EEE +Q+ AEF LS +
Sbjct: 629 EEEEEEEEEMTDESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEFLLSSEEIE 688
Query: 124 LKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLI 183
K+++ + KE N+ + + L V SS +LL + D
Sbjct: 689 TKDEK-------EMDKENND--------GSSEIGKAVGFLSVPKSLSSDSTLLLFKDSSS 733
Query: 184 LTG---AESKSNGEEGYGR 199
G E KS +E G+
Sbjct: 734 KMGYFPTEEKSETDENSGK 752
>gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens]
Length = 1316
Score = 33.5 bits (75), Expect = 0.62
Identities = 95/391 (24%), Positives = 144/391 (36%), Gaps = 89/391 (22%)
Query: 226 QEAIRIAQESNDHVCLQHCLSW--------LYVLGQKRSDSYVLLEHSVKKAVHFG--LP 275
QE +++ +S L+ CLS+ LY L + +S + K +H LP
Sbjct: 539 QEKVKLCSQS-----LELCLSYDFKVRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSLP 593
Query: 276 RAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGR---STMALQQAQM 332
+ K D + D H ELID+ RL G +T LQ A
Sbjct: 594 GMKRIGASTKSKDRKTEVDTSHRLSIFLELIDVH--------RLNGEQHEATKVLQDAIH 645
Query: 333 LLSMNSLEA------VNAGVQQNNTESFAVALCHLAELHAEQGCFAAASE-----VLKHL 381
S S E + + Q + E AL L + AEQ F A E LKH
Sbjct: 646 EFSGTSEEVRVTIANADLALAQGDIER---ALSILQNVTAEQPYFIEAREKMADIYLKHR 702
Query: 382 KERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNSIEGVYRKAVVLQA 441
K++ L++ C ++I +R N + L+ G +N +E QA
Sbjct: 703 KDKM--------LYITCFREIA-ERMANPRSF-----LLLGDAYMNILEPEEAIVAYEQA 748
Query: 442 QNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQALALSKE 501
NQ + L K+ K N M I+ Y+ + AL ++
Sbjct: 749 LNQNPKDGTLASKMGKALIKTHNYSMAIT--------YYEA------------ALKTGQK 788
Query: 502 YRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDKGRAMFLVAKCQVA 561
L Y +E +L L + + + AL A EP+ A+++ GR L+AK
Sbjct: 789 NYLCYDLAELLLKLKWYDKAEKVLQHAL-----AHEPVNELSALMEDGRCQVLLAKVY-- 841
Query: 562 SAASYDQPKKAEALEAAIENLNEAKNYFAKV 592
K E L AI L +A+ A+V
Sbjct: 842 --------SKMEKLGDAITALQQARELQARV 864
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 33.1 bits (74), Expect = 0.81
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 56 YTALQQYFQNG-EKKTVEDADMELTSRDEGERKMEKEELD--VSVREEEVSCSGPLSQKQ 112
+T + FQ G E K V + + TS D+ KM++++L +++ +E+ P+ +K
Sbjct: 385 FTNAKSKFQKGKESKLVTN---QSTSEDQPLFKMDRQQLQRKTALKNKELCADNPILKKD 441
Query: 113 AE-------FFLSQQASLLKNDETKALTPASLQ 138
++ LSQ+ +LK K+L+P+ L+
Sbjct: 442 SKARTKSGSVTLSQKPKMLKCSNRKSLSPSGLK 474
>gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo
sapiens]
Length = 1288
Score = 33.1 bits (74), Expect = 0.81
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 451 LLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQYLASE 510
+L++ L C++L + ++ L ++++Y SP A+ L QAL L + Q + E
Sbjct: 739 MLRQALAACEELADRSTQRALCLILSKVYLEHRSPDGAIHYLSQALVLGQLLGEQE-SFE 797
Query: 511 TVLNLAFAQLILGIPEQALSLLHMAIEPIL 540
+ L LA+A L+ ++AL +L EP+L
Sbjct: 798 SSLCLAWAYLLASQAKKALDVL----EPLL 823
>gi|225637489 hypothetical protein LOC54777 [Homo sapiens]
Length = 2441
Score = 32.3 bits (72), Expect = 1.4
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 190 KSNGEEGY---GRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLS 246
K NGE G G S + + A + YQ A L L EA QE ++ CL
Sbjct: 1310 KMNGETGRDLDGTSFPHLWMLKAEVLLEMNLYQPARLLLSEAYLAFQELDEPCAEAQCLL 1369
Query: 247 WLYVLGQKRSDSYVLLEHSVKKAVHFGLPRAFAGKTANKLMDALKDSDLLHWKHSLSELI 306
L L K +Y + + +A H G F + L +A LL +HS E
Sbjct: 1370 LLAQLANKEK-NYGQAKKMIAQAQHLGGSEEFWYNSTLTLAEA-----LLSMEHSGREAT 1423
Query: 307 DISIAQK 313
I QK
Sbjct: 1424 VCHIFQK 1430
>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
Length = 681
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 61 QYFQNGEKKTVEDADMELTSRDEGERKME---------KEELDVSVREEEVSCSG 106
QYFQN +T+ D D+ L E + + E KE+L+ + EEEVS G
Sbjct: 89 QYFQNAVSETINDEDISLLPESEEQEREEDGSEIEADDKEDLE-DLEEEEVSDMG 142
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 56 YTALQQYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEF 115
Y L++ F + +D D + DE E + E E+ D EEE CS ++Q +
Sbjct: 318 YDMLREMFSDSRSNNDDDEDED----DEDEDEDEDEDEDEDKEEEEEDCSEEYLERQLQA 373
Query: 116 FLSQQASLLKNDETKALTPASLQKEL 141
+ N+ T ++ +QK++
Sbjct: 374 EFIESGQYRANEGTSSIV-MEIQKQI 398
>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
Length = 3546
Score = 32.3 bits (72), Expect = 1.4
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 4 GELKDMEQFFDDLSDSFSGTEPEVHKT--SVVGLFLRHMILAYSKLSFSQVFKLYTALQQ 61
GE KDM +FF DL PE+ T S+ G + + +++ SQ + + ++
Sbjct: 1974 GEQKDMTEFFTDLITKIEEMSPELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVR- 2032
Query: 62 YFQNGEKKTVEDADMELTSRD--EGERKMEKEELDVSVREEEVSC 104
Q + K + ++ E+T +D EG+ VR E+ +C
Sbjct: 2033 -CQVADMKNIYESLDEVTIKDTLEGDNMYTCSHCGKKVRAEKRAC 2076
>gi|110611919 UDP glucuronosyltransferase 2 family, polypeptide A1
[Homo sapiens]
Length = 527
Score = 32.0 bits (71), Expect = 1.8
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 371 FAAASEVLKHL-KERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNSI 429
F+ AS V KH K +PP+ A L L DQ DR N YHL D + T S
Sbjct: 173 FSPASTVEKHCGKVPYPPSYVPAVLSELTDQMSFTDRIRNFISYHLQDYMFE--TLWKSW 230
Query: 430 EGVYRKAV 437
+ Y KA+
Sbjct: 231 DSYYSKAL 238
>gi|4758980 pituitary tumor-transforming protein 1 [Homo sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 2.4
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 99 EEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPAS--LQKELNNLLKFNP------D 150
E+ V GPL QKQ F S + K + K+ PAS E+ FNP D
Sbjct: 72 EKSVKTKGPLKQKQPSF--SAKKMTEKTVKAKSSVPASDDAYPEIEKFFPFNPLDFESFD 129
Query: 151 FAEAHYLSYL 160
E H +++L
Sbjct: 130 LPEEHQIAHL 139
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 58 ALQQYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAE 114
A + FQ G KKT E D++ +E E+K E E V E E GP S K E
Sbjct: 774 AYSKGFQEGLKKTKELQDLK---EEEEEQKSESPEEPEEVEETEEEEKGPRSSKLEE 827
>gi|154091334 JAW1-related protein isoform c [Homo sapiens]
Length = 597
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 58 ALQQYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAE 114
A + FQ G KKT E D++ +E E+K E E V E E GP S K E
Sbjct: 468 AYSKGFQEGLKKTKELQDLK---EEEEEQKSESPEEPEEVEETEEEEKGPRSSKLEE 521
>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 58 ALQQYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAE 114
A + FQ G KKT E D++ +E E+K E E V E E GP S K E
Sbjct: 692 AYSKGFQEGLKKTKELQDLK---EEEEEQKSESPEEPEEVEETEEEEKGPRSSKLEE 745
>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 58 ALQQYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAE 114
A + FQ G KKT E D++ +E E+K E E V E E GP S K E
Sbjct: 692 AYSKGFQEGLKKTKELQDLK---EEEEEQKSESPEEPEEVEETEEEEKGPRSSKLEE 745
>gi|217416374 hypothetical protein LOC92749 [Homo sapiens]
Length = 740
Score = 31.6 bits (70), Expect = 2.4
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 67 EKKTVEDADMELTSR-DEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLK 125
E KT +D E+TS+ +EG++K +EL + +++ C+G L K QQ K
Sbjct: 126 EVKTSQDKFDEITSKWEEGKQKRIPQELWEMLNTQQLHCAGLLEDKNKLISELQQELKTK 185
Query: 126 NDE 128
+D+
Sbjct: 186 DDQ 188
>gi|62899047 RAD50 interactor 1 [Homo sapiens]
Length = 792
Score = 31.2 bits (69), Expect = 3.1
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 447 EAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQY 506
E + L+ L KL+ ++ +++ + E Y +SP++ LP+ + L K +R +
Sbjct: 262 EIYSYLETLFCQLLKLQTSDELLTEPKQLPEKYSLPASPSVILPIQVMLTPLQKRFRYHF 321
Query: 507 LASETVLNLA-----FAQLILGIPEQALSLLHMAIEPILADGAILDKGRAMF 553
+ L+ AQ+++ I L I+PIL L R F
Sbjct: 322 RGNRQTNVLSKPEWYLAQVLMWIGNHT-EFLDEKIQPILDKVGSLVNARLEF 372
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 31.2 bits (69), Expect = 3.1
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 64 QNGEKKTVEDADMELTSRDEGERKMEKEEL----------DVSVREEEVSCSG------P 107
+ GE++ E+ + EL +E E + E+EEL + +EE+VS +G P
Sbjct: 1761 EEGEEEKGEEEEEELEEEEEEEEETEEEELGKEEIEEKEEERDEKEEKVSWAGIGPTPQP 1820
Query: 108 LSQKQAEFFLSQQASLLKNDE 128
SQ+ ++ QQ +++ +E
Sbjct: 1821 ESQESMQWQWQQQLNVMVKEE 1841
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 30.8 bits (68), Expect = 4.0
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 68 KKTVEDADMELTSRDEGERKMEKE------------ELDVSVREEEVSCSGPLSQKQAEF 115
+K VED +L ++D+ +R +E+E + + E+ S + L +K+
Sbjct: 1009 QKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRL 1068
Query: 116 FLSQQASLLKNDETKAL 132
+ Q+A ++ E AL
Sbjct: 1069 LVLQEADSIRQQELSAL 1085
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 30.8 bits (68), Expect = 4.0
Identities = 81/401 (20%), Positives = 146/401 (36%), Gaps = 46/401 (11%)
Query: 85 ERKMEKEEL------DVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQ 138
++ EKEE +S + E + + +K A F Q L +++ + +T A ++
Sbjct: 190 QQLQEKEEFISTLQAQLSQTQAEQAAQQVVREKDARF--ETQVRLHEDELLQLVTQADVE 247
Query: 139 KELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYG 198
E+ L+ E H S + +V D+ + ++++ + E
Sbjct: 248 TEMQQKLRVLQRKLEEHEESLVGRAQVVDLLQQELTAAEQRNQILSQQLQQM----EAEH 303
Query: 199 RSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSD- 257
+LR N ++ L+ A R N + H L GQ +++
Sbjct: 304 NTLR----NTVETEREESKILLEKMELEVAERKLSFHNLQEEMHHLLEQFEQAGQAQAEL 359
Query: 258 --SYVLLEHSVK-----KAVHFGLPRAFAGKTANKLMDALKD--SDLLHWKH-------- 300
Y LE K K H L G+ DALKD S LL K+
Sbjct: 360 ESRYSALEQKHKAEMEEKTSHI-LSLQKTGQELQSACDALKDQNSKLLQDKNEQAVQSAQ 418
Query: 301 SLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTESFAVALCH 360
++ +L D + I + R + LQQ + + + N G Q E+ A
Sbjct: 419 TIQQLEDQLQQKSKEISQFLNR--LPLQQHETASQTSFPDVYNEGTQAVTEENIASLQKR 476
Query: 361 LAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLV 420
+ EL E+G +S L+ LK S L ++ + DR +++ +
Sbjct: 477 VVELENEKGALLLSSIELEELKAENEKLSSQITLLEAQNRTGEADREVSE---------I 527
Query: 421 TGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQK 461
+ + N ++ +N S+ HK L LL+ ++
Sbjct: 528 SIVDIANKRSSSAEESGQDVLENTFSQKHKELSVLLLEMKE 568
Score = 30.0 bits (66), Expect = 6.9
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 3 EGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQ- 61
E +LK+ E+ +DL SF+ + E S + K+S SQ+ + TALQ+
Sbjct: 2573 EEKLKESEEANEDLRRSFNALQEEKQDLS--------KEIESLKVSISQLTRQVTALQEE 2624
Query: 62 -----YFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFF 116
Y + K E + +R E EE V V++E G + K +
Sbjct: 2625 GTLGLYHAQLKVKEEEVHRLSALFSSSQKRIAELEEELVCVQKEAAKKVGEIEDKLKKEL 2684
Query: 117 --LSQQASLLKND-ETKALTPASLQKEL 141
L A +++N+ ET A L ++L
Sbjct: 2685 KHLHHDAGIMRNETETAEERVAELARDL 2712
>gi|7656849 acyl-Coenzyme A dehydrogenase family, member 8 [Homo
sapiens]
Length = 415
Score = 30.8 bits (68), Expect = 4.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 343 NAGVQQNNTESFAVALCHLAELHAEQGCFAAASEVLK 379
NA V AVALC +A+L A CFA ++ L+
Sbjct: 335 NAAVALQEERKDAVALCSMAKLFATDECFAICNQALQ 371
>gi|222537714 taxilin beta [Homo sapiens]
Length = 684
Score = 30.4 bits (67), Expect = 5.3
Identities = 69/311 (22%), Positives = 119/311 (38%), Gaps = 37/311 (11%)
Query: 64 QNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASL 123
+N E ED D E T+ + G + E +E VS +K+ L ++A+L
Sbjct: 90 ENAESPDNEDGDCEETTEEAGREPVASGE--PPTVKEPVSNKEQKLEKKILKGLGKEANL 147
Query: 124 LKNDETKALTPASLQKELNNLLKFNPDFAEAH-----YLSYLNNLRVQDVFSSTHSLLHY 178
L + K TP +++ + L K + + H L L +VQ + L
Sbjct: 148 LMQNLNKLQTP---EEKFDFLFKKYAELLDEHRTEQKKLKLLQKKQVQ-IQKEKDQLQGE 203
Query: 179 FDRLILTGA--ESKSNGEEGYGRSLRYAALNLAALHCR-----FGHYQQAELALQEAIRI 231
R IL + ES + + ++L+ AL A H+Q +Q I
Sbjct: 204 HSRAILARSKLESLCRELQRHNKTLKEEALQRAREEEEKRKEITSHFQSTLTDIQGQIEQ 263
Query: 232 AQESNDHVCLQHCLSWLYVLGQKRS---DSYVLLEHSVKKAV-HFGLPRAFAGKTANKLM 287
E N +C ++ L +K D Y L E + K H L + +
Sbjct: 264 QSERNMKLCQENT-----ELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEQAQ 318
Query: 288 DALKDSDLLHWKHSLSELIDISIAQKTAIWRLYG---RSTMALQQAQMLLSMNSLEAVNA 344
+ +K+++ H K L++ + A W+L + + QAQ+ L E +
Sbjct: 319 EMMKEAEERH-KREKEYLLN-----QAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQS 372
Query: 345 GVQQNNTESFA 355
+ ++N E FA
Sbjct: 373 TLTKSN-EVFA 382
>gi|226693318 adenosine deaminase-like isoform 1 [Homo sapiens]
Length = 328
Score = 30.4 bits (67), Expect = 5.3
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 83 EGERKMEKEELDVSVREEEV--SCSGPLSQKQA-----EFFLSQQASLLKNDETKALTPA 135
EG ++ ++E LD+ VR GPL K+ EFFLS + ++L D + T
Sbjct: 127 EGIKQSKQENLDIDVRYLIAVDRRGGPLVAKETVKLAEEFFLSTEGTVLGLDLSGDPTIP 186
Query: 136 SLQKELNNLLKFNPD 150
+ +KE LL PD
Sbjct: 187 NQKKETQILLDLLPD 201
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 67 EKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKN 126
EK+ E+ E R E E KM ++E + +EE++ + Q+Q E Q+ + +
Sbjct: 364 EKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMWEQ 423
Query: 127 DE 128
+E
Sbjct: 424 EE 425
>gi|21359945 chromosome condensation protein G [Homo sapiens]
Length = 1015
Score = 30.4 bits (67), Expect = 5.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 148 NPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAE 188
N DFA H++ L L++ DV +L FD+L+ G E
Sbjct: 615 NQDFARKHFVLLLQVLQIDDVTIKISALKAIFDQLMTFGIE 655
>gi|68077164 Yeast Sps1/Ste20-related kinase 4 isoform 1 [Homo
sapiens]
Length = 1328
Score = 30.4 bits (67), Expect = 5.3
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 64 QNGEKKTVEDAD-MELTSRDEGERKMEKEELDV----SVREEEVSCSGPLSQKQAEFFLS 118
+N + K +E+ + +E+T ++G+ + E L +VREE++ C G ++K E S
Sbjct: 306 ENWKSKEIEECNKIEITHFEKGQSLVSFENLKEGNIPAVREEDIDCHGSKTRKPEE-ENS 364
Query: 119 QQASLLKNDETKA 131
Q S KN+ + A
Sbjct: 365 QYLSSRKNESSVA 377
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 30.4 bits (67), Expect = 5.3
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 33/216 (15%)
Query: 106 GPLSQK-----QAEFFLSQQASLLKNDETKA-LTPASLQKELNNLLKFNPDFA------- 152
GPL++K Q ++ L KN T L + +ELNN+ K N F+
Sbjct: 570 GPLTKKPWLGKQGNNNQNKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVN 629
Query: 153 ---------EAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSLRY 203
EA + YL N + SST ++L+ +R I ++N + S +
Sbjct: 630 IQVAFKGDPEAALIQYLTNEEARKAISSTEAVLN--NRFIRVLWHRENNEQPTLQSSAQL 687
Query: 204 AALNLAAL-HCRFGHYQQAELALQEAIRIAQE--SNDHVCLQHCLSWLYVLGQKRSDSYV 260
L H H+ + Q+ + +AQ S H +Q +S + S +YV
Sbjct: 688 LLQQQQTLSHLSQQHHHLPQHLHQQQVLVAQSAPSTVHGGIQKMMS-----KPQTSGAYV 742
Query: 261 LLEHSVKKAV-HFGLPRAFAGKTANKLMDALKDSDL 295
L + VK + H G ++ A N+ A +D +
Sbjct: 743 LNKVPVKHRLGHAGGNQSDASHLLNQSGGAGEDCQI 778
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 30.0 bits (66), Expect = 6.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 66 GEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLK 125
G ++ +E EL + E ER+ E+ +L + ++EE +Q E L QQ L+
Sbjct: 330 GSEQELEQQRQELERQQELERQQEQRQLQLKLQEE---------LQQLEQQLEQQQQQLE 380
Query: 126 NDETK-ALTPASL 137
E + LTP L
Sbjct: 381 QQEVQLELTPVEL 393
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 30.0 bits (66), Expect = 6.9
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 59 LQQYFQNGEKKTVEDADM-ELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFL 117
+++ Q EKKT + M E S E E+KM +EE + +EE++ Q+Q E
Sbjct: 692 MEKKTQEQEKKTWDQEKMREEESMREREKKMREEEEMMREQEEKMQEQEEKMQEQEEEMW 751
Query: 118 SQQASLLKNDE 128
Q+ + + +E
Sbjct: 752 EQEEKMWEQEE 762
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,621,563
Number of Sequences: 37866
Number of extensions: 870544
Number of successful extensions: 3353
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 3312
Number of HSP's gapped (non-prelim): 73
length of query: 643
length of database: 18,247,518
effective HSP length: 109
effective length of query: 534
effective length of database: 14,120,124
effective search space: 7540146216
effective search space used: 7540146216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.