BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|21265113 transmembrane 4 superfamily member 5 [Homo sapiens] (197 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21265113 transmembrane 4 superfamily member 5 [Homo sapiens] 422 e-119 gi|21265101 transmembrane 4 superfamily member 1 [Homo sapiens] 195 2e-50 gi|4759240 transmembrane 4 superfamily member 4 [Homo sapiens] 169 1e-42 gi|20270327 transmembrane 4 L six family member 18 [Homo sapiens] 129 2e-30 gi|115511028 transmembrane 4 L six family member 19 [Homo sapiens] 109 2e-24 gi|188528611 transmembrane 4 L six family member 20 [Homo sapiens] 59 2e-09 gi|13994372 keratin associated protein 17-1 [Homo sapiens] 33 0.16 gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 32 0.27 gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 32 0.27 gi|6912666 sialin [Homo sapiens] 31 0.60 gi|9790235 solute carrier family 7, member 10 [Homo sapiens] 31 0.60 gi|26986534 Rho GTPase activating protein 12 [Homo sapiens] 31 0.78 gi|54400749 keratin associated protein 5-1 [Homo sapiens] 29 3.0 gi|109255251 loricrin [Homo sapiens] 28 3.9 gi|67003568 skin-specific protein 32 [Homo sapiens] 28 5.0 gi|8394398 taste receptor T2R3 [Homo sapiens] 28 5.0 gi|21314671 transient receptor potential cation channel, subfami... 27 8.6 gi|148613866 tudor domain containing 10 isoform a [Homo sapiens] 27 8.6 gi|157738623 olfactory receptor, family 51, subfamily B, member ... 27 8.6 gi|148613864 tudor domain containing 10 isoform b [Homo sapiens] 27 8.6 >gi|21265113 transmembrane 4 superfamily member 5 [Homo sapiens] Length = 197 Score = 422 bits (1085), Expect = e-119 Identities = 197/197 (100%), Positives = 197/197 (100%) Query: 1 MCTGKCARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60 MCTGKCARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV Sbjct: 1 MCTGKCARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60 Query: 61 LCPGIAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGPRCLM 120 LCPGIAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGPRCLM Sbjct: 61 LCPGIAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGPRCLM 120 Query: 121 NGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLFSLLVAASCLEIVLCGIQLVNA 180 NGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLFSLLVAASCLEIVLCGIQLVNA Sbjct: 121 NGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLFSLLVAASCLEIVLCGIQLVNA 180 Query: 181 TIGVFCGDCRKKQDTPH 197 TIGVFCGDCRKKQDTPH Sbjct: 181 TIGVFCGDCRKKQDTPH 197 >gi|21265101 transmembrane 4 superfamily member 1 [Homo sapiens] Length = 202 Score = 195 bits (496), Expect = 2e-50 Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 4/197 (2%) Query: 1 MCTGKCARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60 MC GKCARC+G SL+ L L+CI AN LL PNGET + + NHLS VW G +GGGL++ Sbjct: 1 MCYGKCARCIGHSLVGLALLCIAANILLYFPNGETKYASENHLSRFVWFFSGIVGGGLLM 60 Query: 61 LCPG---IAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGPR 117 L P I + GCCG CG RC ML SV ++ G+ G+ YC+ V+ GL GP Sbjct: 61 LLPAFVFIGLEQDDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPL 120 Query: 118 CLMN-GEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLFSLLVAASCLEIVLCGIQ 176 CL + G+W Y F T G YLL+ + W C P +V WNV+LFS+L+A +E +LC IQ Sbjct: 121 CLDSLGQWNYTFASTEGQYLLDTSTWSECTEPKHIVEWNVSLFSILLALGGIEFILCLIQ 180 Query: 177 LVNATIGVFCGDCRKKQ 193 ++N +G CG C Q Sbjct: 181 VINGVLGGICGFCCSHQ 197 >gi|4759240 transmembrane 4 superfamily member 4 [Homo sapiens] Length = 202 Score = 169 bits (428), Expect = 1e-42 Identities = 84/196 (42%), Positives = 114/196 (58%), Gaps = 11/196 (5%) Query: 1 MCTGKCARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60 MCTG CARC+G +LI L +AN LL P G+ N +HLS ++W GG +G G+++ Sbjct: 1 MCTGGCARCLGGTLIPLAFFGFLANILLFFPGGKVIDDN-DHLSQEIWFFGGILGSGVLM 59 Query: 61 LCPGIAAVRAGGKGCCGAGCCGN-----RCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNG 115 + P + + CCG CCGN R M S + G LGA Y +S + G Sbjct: 60 IFPALVFLGLKNNDCCG--CCGNEGCGKRFAMFTSTIFAVVGFLGAGYSFIISAISINKG 117 Query: 116 PRCLM-NGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLFSLLVAASCLEIVLCG 174 P+CLM N WGY F D G YL + LW++C P VVPWN+TLFS+L+ +++VLC Sbjct: 118 PKCLMANSTWGYPFHD--GDYLNDEALWNKCREPLNVVPWNLTLFSILLVVGGIQMVLCA 175 Query: 175 IQLVNATIGVFCGDCR 190 IQ+VN +G CGDC+ Sbjct: 176 IQVVNGLLGTLCGDCQ 191 >gi|20270327 transmembrane 4 L six family member 18 [Homo sapiens] Length = 201 Score = 129 bits (323), Expect = 2e-30 Identities = 67/190 (35%), Positives = 100/190 (52%), Gaps = 3/190 (1%) Query: 1 MCTGKCARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60 M + KC C+ LI L L I+ N LL PNG+TS+ ++N L+ VW G G+M+ Sbjct: 1 MGSRKCGGCLSCLLIPLALWSIIVNILLYFPNGQTSYASSNKLTNYVWYFEGICFSGIMM 60 Query: 61 LCPGIAAVRAGGKG---CCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGPR 117 L + CC + C + L S+ S+ G+ + YCL +S GL GP Sbjct: 61 LIVTTVLLVLENNNNYKCCQSENCSKKYVTLLSIIFSSLGIAFSGYCLVISALGLVQGPY 120 Query: 118 CLMNGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLFSLLVAASCLEIVLCGIQL 177 C W Y FE TAG +L + ++W +C P VV WN+ LFS+L+ S L++++C I++ Sbjct: 121 CRTLDGWEYAFEGTAGRFLTDSSIWIQCLEPAHVVEWNIILFSILITLSGLQVIICLIRV 180 Query: 178 VNATIGVFCG 187 V + CG Sbjct: 181 VMQLSKILCG 190 >gi|115511028 transmembrane 4 L six family member 19 [Homo sapiens] Length = 209 Score = 109 bits (272), Expect = 2e-24 Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 16/199 (8%) Query: 6 CARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMVLCPGI 65 C+R +GLSL T L AN LL+PN + ++ L L G GGGLMVL I Sbjct: 14 CSRILGLSLGTAALFAAGANVALLLPNWDVTYLLRGLLGRHAMLGTGLWGGGLMVLTAAI 73 Query: 66 AAVRAGGK-GCCG-AGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGPRCLMN-- 121 G + GC +G C + +L ++ S +LGA+ C SG L++GP C+ + Sbjct: 74 LISLMGWRYGCFSKSGLCRS---VLTALLSGGLALLGALICFVTSGVALKDGPFCMFDVS 130 Query: 122 -------GEWGYHFEDTAGA-YLLNRTLWDR-CEAPPRVVPWNVTLFSLLVAASCLEIVL 172 ++GY F+D YL +R+LW+ C P V W+V+LFS L+ S L+++L Sbjct: 131 SFNQTQAWKYGYPFKDLHSRNYLYDRSLWNSVCLEPSAAVVWHVSLFSALLCISLLQLLL 190 Query: 173 CGIQLVNATIGVFCGDCRK 191 + ++N+ +G+FC C K Sbjct: 191 VVVHVINSLLGLFCSLCEK 209 >gi|188528611 transmembrane 4 L six family member 20 [Homo sapiens] Length = 229 Score = 59.3 bits (142), Expect = 2e-09 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 6/116 (5%) Query: 2 CTGKCARCVGLSLITLCLVCIVANAL-LLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60 C C G SL+ L L+ +V NA+ L+V E + N +S W G IG GLM Sbjct: 3 CCEGWTSCNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGLMA 62 Query: 61 LCPGIAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGP 116 + ++ A + CC NR M S S V+GA+YC+ +S L GP Sbjct: 63 IPATTMSLTARKRACCN-----NRTGMFLSSLFSVITVIGALYCMLISIQALLKGP 113 >gi|13994372 keratin associated protein 17-1 [Homo sapiens] Length = 105 Score = 33.1 bits (74), Expect = 0.16 Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 62 CPGIAAVRAGGKGCCGAGCCGNRC 85 C G G GCCG+ CCG+ C Sbjct: 62 CGGCGGCGGCGGGCCGSSCCGSSC 85 Score = 32.0 bits (71), Expect = 0.35 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 62 CPGIAAVRAGGKGC----CGAGCCGNRCRMLRSVFSSAFGVLGAIYC-LSVSGAGLRNGP 116 C G GG GC CG+ CCG+ C G G+ C S G+G GP Sbjct: 35 CCGCGGSGCGGSGCGGSCCGSSCCGSGCGGCGGCGGCGGGCCGSSCCGSSCCGSGC-CGP 93 Query: 117 RC 118 C Sbjct: 94 VC 95 Score = 30.0 bits (66), Expect = 1.3 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 7/34 (20%) Query: 52 GFIGGGLMVLCPGIAAVRAGGKGCCGAGCCGNRC 85 G GGG C G + G CCG+GCCG C Sbjct: 69 GGCGGG----CCGSSCC---GSSCCGSGCCGPVC 95 >gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo sapiens] Length = 1074 Score = 32.3 bits (72), Expect = 0.27 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 24/110 (21%) Query: 61 LCPGIAAVRAGGKGCCGAGCCG---NRCRMLRSVFSSAFGVLGAIYCLSVSGAGLR---- 113 L PG + G+ G G CG + CR++ + G LG L + LR Sbjct: 457 LSPGCDGILGSGRRPDGCGVCGGDDSTCRLVSGNLTDRGGPLGYQKILWIPAGALRLQIA 516 Query: 114 -------------NGPRCLMNGEWGYHFEDTAGAYLLNRTLWDRCEAPPR 150 G R ++NG W D G+Y T++ R PPR Sbjct: 517 QLRPSSNYLALRGPGGRSIINGNWAV---DPPGSYRAGGTVF-RYNRPPR 562 >gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo sapiens] Length = 877 Score = 32.3 bits (72), Expect = 0.27 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 24/110 (21%) Query: 61 LCPGIAAVRAGGKGCCGAGCCG---NRCRMLRSVFSSAFGVLGAIYCLSVSGAGLR---- 113 L PG + G+ G G CG + CR++ + G LG L + LR Sbjct: 457 LSPGCDGILGSGRRPDGCGVCGGDDSTCRLVSGNLTDRGGPLGYQKILWIPAGALRLQIA 516 Query: 114 -------------NGPRCLMNGEWGYHFEDTAGAYLLNRTLWDRCEAPPR 150 G R ++NG W D G+Y T++ R PPR Sbjct: 517 QLRPSSNYLALRGPGGRSIINGNWAV---DPPGSYRAGGTVF-RYNRPPR 562 >gi|6912666 sialin [Homo sapiens] Length = 495 Score = 31.2 bits (69), Expect = 0.60 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 46 QVWLMGGFIGGGLMVLCPG-IAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYC 104 Q W++G F G ++ PG A + GGK G G G L + ++ GV I Sbjct: 108 QGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVL 167 Query: 105 LSVSGAG 111 ++ G G Sbjct: 168 RALEGLG 174 >gi|9790235 solute carrier family 7, member 10 [Homo sapiens] Length = 523 Score = 31.2 bits (69), Expect = 0.60 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 12 LSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIG--GGLMVLCPGIAAVR 69 LS T+ + I+ + + + P G + + L+L VW++GG + G L G+A + Sbjct: 43 LSACTIIIGNIIGSGIFISPKGVLEHSGSVGLALFVWVLGGGVTALGSLCYAELGVAIPK 102 Query: 70 AGG 72 +GG Sbjct: 103 SGG 105 >gi|26986534 Rho GTPase activating protein 12 [Homo sapiens] Length = 846 Score = 30.8 bits (68), Expect = 0.78 Identities = 14/39 (35%), Positives = 18/39 (46%) Query: 112 LRNGPRCLMNGEWGYHFEDTAGAYLLNRTLWDRCEAPPR 150 L P +NGEW H + + Y NR +R PPR Sbjct: 259 LPGSPAIQINGEWETHKDSSGRCYYYNRGTQERTWKPPR 297 >gi|54400749 keratin associated protein 5-1 [Homo sapiens] Length = 278 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 51 GGFIGG-GLMVLCPGIAAVRAGGKGCCGAGC--CGNRC 85 GG GG G C G G KG CG+GC CG+ C Sbjct: 171 GGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGC 208 >gi|109255251 loricrin [Homo sapiens] Length = 312 Score = 28.5 bits (62), Expect = 3.9 Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 14/84 (16%) Query: 51 GGFIGG-----GLMVLCPGIAAVRAGGKGCCGAGCCGNRCRMLRSVFSSAFGVL--GAIY 103 GG IGG G V G GG GC +G G+ C FSS G G Sbjct: 74 GGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGC------FSSGGGGSSGGGSG 127 Query: 104 CLSVSGAGLR-NGPRCLMNGEWGY 126 C S G G G C +G G+ Sbjct: 128 CFSSGGGGSSGGGSGCFSSGGGGF 151 >gi|67003568 skin-specific protein 32 [Homo sapiens] Length = 250 Score = 28.1 bits (61), Expect = 5.0 Identities = 9/16 (56%), Positives = 11/16 (68%) Query: 70 AGGKGCCGAGCCGNRC 85 +G GCCG+G CG C Sbjct: 204 SGSSGCCGSGGCGCSC 219 >gi|8394398 taste receptor T2R3 [Homo sapiens] Length = 316 Score = 28.1 bits (61), Expect = 5.0 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 15/51 (29%) Query: 12 LSLITLCLVCIVANALLLV---PNG----------ETSWTNTNHLSLQVWL 49 L+L+ + L+CI+ L+ PN + SWT TNHLS +WL Sbjct: 51 LALLRIILLCIILTDSFLIEFSPNTHDSGIIMQIIDVSWTFTNHLS--IWL 99 >gi|21314671 transient receptor potential cation channel, subfamily M, member 4 [Homo sapiens] Length = 1214 Score = 27.3 bits (59), Expect = 8.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 69 RAGGKGCCGAGCCGNRC 85 ++G GCCG C G RC Sbjct: 752 QSGRPGCCGGRCGGRRC 768 >gi|148613866 tudor domain containing 10 isoform a [Homo sapiens] Length = 366 Score = 27.3 bits (59), Expect = 8.6 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 11/53 (20%) Query: 107 VSGAGLRNGPRCLMNGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLF 159 + G+ + G RCL YH D A W+RC RV W V +F Sbjct: 240 LEGSTVMRGTRCLAE----YHLGDYGHA-------WNRCWVLDRVDTWAVVMF 281 >gi|157738623 olfactory receptor, family 51, subfamily B, member 2 [Homo sapiens] Length = 312 Score = 27.3 bits (59), Expect = 8.6 Identities = 14/37 (37%), Positives = 20/37 (54%) Query: 156 VTLFSLLVAASCLEIVLCGIQLVNATIGVFCGDCRKK 192 V L SL + CL I+ I ++N IG+ G+ R K Sbjct: 198 VILISLTIFLDCLIILFSYILILNTVIGIASGEERAK 234 >gi|148613864 tudor domain containing 10 isoform b [Homo sapiens] Length = 351 Score = 27.3 bits (59), Expect = 8.6 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 11/53 (20%) Query: 107 VSGAGLRNGPRCLMNGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLF 159 + G+ + G RCL YH D A W+RC RV W V +F Sbjct: 240 LEGSTVMRGTRCLAE----YHLGDYGHA-------WNRCWVLDRVDTWAVVMF 281 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.328 0.143 0.496 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,651,044 Number of Sequences: 37866 Number of extensions: 391621 Number of successful extensions: 1430 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1375 Number of HSP's gapped (non-prelim): 40 length of query: 197 length of database: 18,247,518 effective HSP length: 97 effective length of query: 100 effective length of database: 14,574,516 effective search space: 1457451600 effective search space used: 1457451600 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.