Search of human proteins with 21265070

Search of human proteins with 21265070

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21265070 mitochondrial ribosomal protein L2 [Homo sapiens]
         (305 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21265070 mitochondrial ribosomal protein L2 [Homo sapiens]         617   e-177
gi|4506663 ribosomal protein L8 [Homo sapiens]                         45   8e-05
gi|15431306 ribosomal protein L8 [Homo sapiens]                        45   8e-05
gi|31742505 Rho family guanine-nucleotide exchange factor [Homo ...    33   0.31 
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]       30   3.5  
gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]               29   4.5  
gi|7706501 WW domain binding protein 11 [Homo sapiens]                 29   4.5  
gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]            29   5.9  
gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]            29   5.9  
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]    28   7.7  

>gi|21265070 mitochondrial ribosomal protein L2 [Homo sapiens]
          Length = 305

 Score =  617 bits (1591), Expect = e-177
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MALCALTRALRSLNLAPPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRPVLTSVALN 60
           MALCALTRALRSLNLAPPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRPVLTSVALN
Sbjct: 1   MALCALTRALRSLNLAPPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRPVLTSVALN 60

Query: 61  ANFVSWKSRTKYTITPVKMRKSGGRDHTGRIRVHGIGGGHKQRYRMIDFLRFRPEETKSG 120
           ANFVSWKSRTKYTITPVKMRKSGGRDHTGRIRVHGIGGGHKQRYRMIDFLRFRPEETKSG
Sbjct: 61  ANFVSWKSRTKYTITPVKMRKSGGRDHTGRIRVHGIGGGHKQRYRMIDFLRFRPEETKSG 120

Query: 121 PFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGD 180
           PFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGD
Sbjct: 121 PFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGD 180

Query: 181 AHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETC 240
           AHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETC
Sbjct: 181 AHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETC 240

Query: 241 VATVGRVSNVDHNKRVIGKAGRNRWLGKRPNSGRWHRKGGWAGRKIRPLPPMKSYVKLPS 300
           VATVGRVSNVDHNKRVIGKAGRNRWLGKRPNSGRWHRKGGWAGRKIRPLPPMKSYVKLPS
Sbjct: 241 VATVGRVSNVDHNKRVIGKAGRNRWLGKRPNSGRWHRKGGWAGRKIRPLPPMKSYVKLPS 300

Query: 301 ASAQS 305
           ASAQS
Sbjct: 301 ASAQS 305


>gi|4506663 ribosomal protein L8 [Homo sapiens]
          Length = 257

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 103 RYRMIDFLRFRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDT 162
           R R +DF        + G  +  V  + +DP R A +A V      R+   TE   A + 
Sbjct: 28  RLRAVDFAE------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81

Query: 163 ILNSNHIGRMAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217
           I    H G+     ++     G+  P+G +P GT++  +E +PG   +  RA+G    ++
Sbjct: 82  I----HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVI 137

Query: 218 RKVNGT--AIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAGR 262
                T    ++LPS  +  +     A VG V+      + I KAGR
Sbjct: 138 SHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGR 184


>gi|15431306 ribosomal protein L8 [Homo sapiens]
          Length = 257

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 103 RYRMIDFLRFRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDT 162
           R R +DF        + G  +  V  + +DP R A +A V      R+   TE   A + 
Sbjct: 28  RLRAVDFAE------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81

Query: 163 ILNSNHIGRMAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217
           I    H G+     ++     G+  P+G +P GT++  +E +PG   +  RA+G    ++
Sbjct: 82  I----HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVI 137

Query: 218 RKVNGT--AIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAGR 262
                T    ++LPS  +  +     A VG V+      + I KAGR
Sbjct: 138 SHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGR 184


>gi|31742505 Rho family guanine-nucleotide exchange factor [Homo
           sapiens]
          Length = 1114

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 89  GRIRVHG---IGGGHKQRYRMIDFLRFRPEETKSGPFEEKVI--QVRYDP 133
           G++ +HG   +   HK RY+M D +RF+P + +   FE  ++  ++R +P
Sbjct: 839 GKLLLHGPFSVWTIHKDRYKMKDLIRFKPSQRQIYLFERGIVFCKIRMEP 888


>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
          Length = 2217

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 18  PTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRPVL 54
           P++AAP P   PA  +    L   P A + +PCR ++
Sbjct: 841 PSLAAPLPPASPALPLQAVKLPHPPGAPLAMPCRTIV 877


>gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]
          Length = 590

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/91 (26%), Positives = 33/91 (36%)

Query: 7   TRALRSLNLAPPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRPVLTSVALNANFVSW 66
           +  L  L L  PT   P P    ++   ++ L   P     L   P  + V   + FV  
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADTPEIEASLTKVPPSSLVQERSFFVRM 251

Query: 67  KSRTKYTITPVKMRKSGGRDHTGRIRVHGIG 97
           KS        VK         TGR+R H +G
Sbjct: 252 KSTLTKRGLHVKASGYKVIHVTGRLRAHALG 282


>gi|7706501 WW domain binding protein 11 [Homo sapiens]
          Length = 641

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 15  LAPPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLP 49
           L PP   AP P LFP A + N G+L  P  L+  P
Sbjct: 511 LVPPLGPAP-PGLFPPAPLPNPGVLSAPPNLIQRP 544


>gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 223

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 258 GKAGRNRWLGKRPNSGRWHRKGGWAGRKIRPLPPMKS 294
           GK+GR R + +  + G WH     +  K+   PP+ S
Sbjct: 40  GKSGRTRTISEMESDGVWHEPRACSELKVPGTPPLLS 76


>gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 223

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 258 GKAGRNRWLGKRPNSGRWHRKGGWAGRKIRPLPPMKS 294
           GK+GR R + +  + G WH     +  K+   PP+ S
Sbjct: 40  GKSGRTRTISEMESDGVWHEPRACSELKVPGTPPLLS 76


>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
          Length = 2608

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)

Query: 17  PPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRP 52
           P +VA P PS+FP  Q         P+ L++LP  P
Sbjct: 853 PASVAGPVPSVFPLPQ-------DAPTQLVILPSEP 881


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,161,888
Number of Sequences: 37866
Number of extensions: 537806
Number of successful extensions: 1355
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 12
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.