Search of human proteins with 212276121

Search of human proteins with 212276121

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|212276121 malignant T cell amplified sequence 1 isoform 2
[Homo sapiens]
         (182 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|212276121 malignant T cell amplified sequence 1 isoform 2 [Ho...   377   e-105
gi|7662502 malignant T cell amplified sequence 1 isoform 1 [Homo...   367   e-102
gi|56699485 ligatin [Homo sapiens]                                     61   6e-10
gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens]    30   0.88 
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi...    30   0.88 
gi|194272176 phospholipase D1 isoform b [Homo sapiens]                 29   2.0  
gi|4505873 phospholipase D1 isoform a [Homo sapiens]                   29   2.0  
gi|225543094 matrix metalloproteinase 1 isoform 2 [Homo sapiens]       27   7.4  
gi|4505215 matrix metalloproteinase 1 isoform 1 preproprotein [H...    27   7.4  

>gi|212276121 malignant T cell amplified sequence 1 isoform 2 [Homo
           sapiens]
          Length = 182

 Score =  377 bits (968), Expect = e-105
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 1   MGKGRFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI 60
           MGKGRFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI
Sbjct: 1   MGKGRFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI 60

Query: 61  EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP 120
           EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP
Sbjct: 61  EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP 120

Query: 121 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT 180
           GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT
Sbjct: 121 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT 180

Query: 181 YK 182
           YK
Sbjct: 181 YK 182


>gi|7662502 malignant T cell amplified sequence 1 isoform 1 [Homo
           sapiens]
          Length = 181

 Score =  367 bits (943), Expect = e-102
 Identities = 177/178 (99%), Positives = 178/178 (100%)

Query: 5   RFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILT 64
           +FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILT
Sbjct: 4   KFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILT 63

Query: 65  VNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKL 124
           VNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKL
Sbjct: 64  VNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKL 123

Query: 125 YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 182
           YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK
Sbjct: 124 YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 181


>gi|56699485 ligatin [Homo sapiens]
          Length = 584

 Score = 60.8 bits (146), Expect = 6e-10
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 7/177 (3%)

Query: 6   FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH----I 60
           F +   V +   +K S  + ++  +   FP +    +++++P K+ + IV+ + H    +
Sbjct: 2   FAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAV 61

Query: 61  EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP 120
            +    G  + F + E   YPT+  L  YP +LP        ++ ++ GA++M PGL  P
Sbjct: 62  TVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP 120

Query: 121 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMS-AEDIEKVNKGIGIENIHYLNDGLW 176
            A L       + AI   G +  + +GV  MS AE +    KG G   +H   D LW
Sbjct: 121 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLW 177


>gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens]
          Length = 719

 Score = 30.4 bits (67), Expect = 0.88
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 3   KGRFDEK-ENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDP 50
           +G+ D K E VSN + L   + +   N+L ++ P  +P  + I P+KDP
Sbjct: 528 RGKVDGKQEPVSNGVILPNGLEESPPNELSKERPADDPTASHINPQKDP 576


>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo
           sapiens]
          Length = 1435

 Score = 30.4 bits (67), Expect = 0.88
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 3   KGRFDEK-ENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDP 50
           +G+ D K E VSN + L   + +   N+L ++ P  +P  + I P+KDP
Sbjct: 528 RGKVDGKQEPVSNGVILPNGLEESPPNELSKERPADDPTASHINPQKDP 576


>gi|194272176 phospholipase D1 isoform b [Homo sapiens]
          Length = 1036

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 95  HQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAE 154
           H+  D G++K V SG ++           L PAA++++ ++  + K   +    ++ S +
Sbjct: 492 HRLTDVGSVKRVTSGPSL---------GSLPPAAMESMESLRLKDKNEPVQNLPIQKSID 542

Query: 155 DIEKVNKGIG 164
           D++   KGIG
Sbjct: 543 DVDSKLKGIG 552


>gi|4505873 phospholipase D1 isoform a [Homo sapiens]
          Length = 1074

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 95  HQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAE 154
           H+  D G++K V SG ++           L PAA++++ ++  + K   +    ++ S +
Sbjct: 492 HRLTDVGSVKRVTSGPSL---------GSLPPAAMESMESLRLKDKNEPVQNLPIQKSID 542

Query: 155 DIEKVNKGIG 164
           D++   KGIG
Sbjct: 543 DVDSKLKGIG 552


>gi|225543094 matrix metalloproteinase 1 isoform 2 [Homo sapiens]
          Length = 403

 Score = 27.3 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 62  ILTVNGELLFFR----QREGPFYPTLRL 85
           I T+ GE++FF+     R  PFYP + L
Sbjct: 221 ITTIRGEVMFFKDRFYMRTNPFYPEVEL 248


>gi|4505215 matrix metalloproteinase 1 isoform 1 preproprotein [Homo
           sapiens]
          Length = 469

 Score = 27.3 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 62  ILTVNGELLFFR----QREGPFYPTLRL 85
           I T+ GE++FF+     R  PFYP + L
Sbjct: 287 ITTIRGEVMFFKDRFYMRTNPFYPEVEL 314


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,033,020
Number of Sequences: 37866
Number of extensions: 290737
Number of successful extensions: 546
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 11
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.