Search of human proteins with 209862796

Search of human proteins with 209862796

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|209862796 heme-responsive gene 1 [Homo sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209862796 heme-responsive gene 1 [Homo sapiens]                    296   4e-81
gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo ...    31   0.33 
gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens]    31   0.33 
gi|21361112 solute carrier family 30 (zinc transporter), member ...    29   1.6  
gi|24476016 G protein-coupled receptor 161 isoform 2 [Homo sapiens]    28   2.1  
gi|71999131 opsin 3 [Homo sapiens]                                     28   3.6  
gi|110347451 platelet/endothelial cell adhesion molecule [Homo s...    27   4.7  
gi|170932505 neuromedin U receptor 2 [Homo sapiens]                    27   4.7  

>gi|209862796 heme-responsive gene 1 [Homo sapiens]
          Length = 146

 Score =  296 bits (758), Expect = 4e-81
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MAPSRLQLGLRAAYSGISSVAGFSIFLVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYM 60
           MAPSRLQLGLRAAYSGISSVAGFSIFLVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYM
Sbjct: 1   MAPSRLQLGLRAAYSGISSVAGFSIFLVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYM 60

Query: 61  QDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSYYLSSVWSFISF 120
           QDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSYYLSSVWSFISF
Sbjct: 61  QDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSYYLSSVWSFISF 120

Query: 121 KWAFLLSLYAHRYRADFADISILSDF 146
           KWAFLLSLYAHRYRADFADISILSDF
Sbjct: 121 KWAFLLSLYAHRYRADFADISILSDF 146


>gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo
           sapiens]
          Length = 231

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 26  FLVWTVVYRQPGTAAMGGLAGVLALWVL-------VTHVMYMQDYWRTWLKGLRGFFFVG 78
           FLVWT+V      AA   +  +L  WV+       +  +M++  Y   + K    +  + 
Sbjct: 117 FLVWTMV------AATHIVYPLLQGWVMYVSLTSFLISLMFLLSYLFGFYKRFESWRVLD 170

Query: 79  VLFSAVSIAAFCTFLVLAITR---HQSLTDPTSYYLSSVWSFISFKWAFLLSLYA 130
            L+   +   + +  VL +      + L DP  YY++S  SF +F    L  L+A
Sbjct: 171 SLYHGTTGILYMSAAVLQVHATIVSEKLLDPRIYYINSAASFFAFIATLLYILHA 225


>gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens]
          Length = 153

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 26  FLVWTVVYRQPGTAAMGGLAGVLALWVL-------VTHVMYMQDYWRTWLKGLRGFFFVG 78
           FLVWT+V      AA   +  +L  WV+       +  +M++  Y   + K    +  + 
Sbjct: 39  FLVWTMV------AATHIVYPLLQGWVMYVSLTSFLISLMFLLSYLFGFYKRFESWRVLD 92

Query: 79  VLFSAVSIAAFCTFLVLAITR---HQSLTDPTSYYLSSVWSFISFKWAFLLSLYA 130
            L+   +   + +  VL +      + L DP  YY++S  SF +F    L  L+A
Sbjct: 93  SLYHGTTGILYMSAAVLQVHATIVSEKLLDPRIYYINSAASFFAFIATLLYILHA 147


>gi|21361112 solute carrier family 30 (zinc transporter), member 3
           [Homo sapiens]
          Length = 388

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 17/96 (17%)

Query: 17  ISSVAGFSIFLVW--------TVVYRQPGTAAMGGLAGVLALWVLVTHVMYMQDYWRTWL 68
           + S+ G S+F +W        T+ +    +  +G LA V++LW++   ++Y+      ++
Sbjct: 113 VGSMMG-SLFSLWLSTRPATRTMTFGWHRSETLGALASVVSLWMVTGILLYL-----AFV 166

Query: 69  KGLRGFFFV--GVLFSAVSIAAFCTFLVLAITRHQS 102
           + L   + +  G +    SIA  C  L++A   HQ+
Sbjct: 167 RLLHSDYHIEGGAMLLTASIAV-CANLLMAFVLHQA 201


>gi|24476016 G protein-coupled receptor 161 isoform 2 [Homo sapiens]
          Length = 529

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 50  LWVLVTHVMYMQDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSY 109
           L VLV   +      R W+ G+    F  +L+  +S A+  T  V+AI R+ ++  P  Y
Sbjct: 76  LSVLVLPFVVTSSIRREWIFGVVWCNFSALLYLLISSASMLTLGVIAIDRYYAVLYPMVY 135


>gi|71999131 opsin 3 [Homo sapiens]
          Length = 402

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 52  VLVTHVMYMQDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSYYL 111
           V  T V  +++ W     G     F G LF  VSIA   T  VLA  R+  +        
Sbjct: 95  VTFTFVSCLRNGWVWDTVGCVWDGFSGSLFGIVSIA---TLTVLAYERYIRVVHARVINF 151

Query: 112 SSVWSFISFKWAFLLS 127
           S  W  I++ W + L+
Sbjct: 152 SWAWRAITYIWLYSLA 167


>gi|110347451 platelet/endothelial cell adhesion molecule [Homo
           sapiens]
          Length = 738

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 67  WLKGLRGFFFVGVLFSAVSIAAFCTFL 93
           W KGL     +GV+ + + IAA C FL
Sbjct: 599 WKKGLIAVVIIGVIIALLIIAAKCYFL 625


>gi|170932505 neuromedin U receptor 2 [Homo sapiens]
          Length = 415

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 56  HVMYMQDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLV------LAITRHQSLTDPTSY 109
           H+   ++Y        R  FF+ V  S V +  F   ++      L I +HQ++  PT+Y
Sbjct: 25  HLNSTEEYLAFLCGPRRSHFFLPV--SVVYVPIFVVGVIGNVLVCLVILQHQAMKTPTNY 82

Query: 110 YLSSV 114
           YL S+
Sbjct: 83  YLFSL 87


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.140    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,034
Number of Sequences: 37866
Number of extensions: 167962
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 9
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.