Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC48A1 Sequence: fasta or formatted (146aa) NCBI GI: 209862796
Description:

heme-responsive gene 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         16           2
 C cysteine            0.7          1           1
 D aspartate           3.4          5           1
 E glutamate           0.0          0           0
 F phenylalanine       8.9         13           3
 G glycine             6.8         10           2
 H histidine           2.1          3           1
 I isoleucine          4.8          7           1
 K lysine              1.4          2           1
 L leucine            13.0         19           2
 M methionine          2.7          4           1
 N asparagine          0.0          0           0
 P proline             2.1          3           1
 Q glutamine           2.7          4           1
 R arginine            5.5          8           1
 S serine             11.0         16           2
 T threonine           5.5          8           1
 V valine              8.9         13           2
 W tryptophan          4.1          6           1
 Y tyrosine            5.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heme-responsive gene 1 
LOC100287119          0.022   PREDICTED: hypothetical protein XP_002342305 
MALL                  0.022   mal, T-cell differentiation protein-like 
SLC30A3               0.015   solute carrier family 30 (zinc transporter), member ...
GPR161                0.011   G protein-coupled receptor 161 isoform 2 
OPN3                  0.011   opsin 3 
PECAM1                0.007   platelet/endothelial cell adhesion molecule 
NMUR2                 0.007   neuromedin U receptor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press