BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|209571584 farnesyl diphosphate synthase isoform b [Homo sapiens] (353 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|209571584 farnesyl diphosphate synthase isoform b [Homo sapiens] 711 0.0 gi|209571582 farnesyl diphosphate synthase isoform a [Homo sapiens] 711 0.0 gi|4503685 farnesyl diphosphate synthase isoform a [Homo sapiens] 711 0.0 gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Hom... 45 1e-04 gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo... 45 1e-04 gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Hom... 43 5e-04 gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens] 34 0.17 gi|31377562 HAUS augmin-like complex, subunit 6 [Homo sapiens] 32 1.1 gi|239756261 PREDICTED: similar to hect domain and RLD 2 [Homo s... 30 3.3 gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo s... 30 3.3 gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo s... 30 3.3 gi|44681484 cell division cycle associated 2 [Homo sapiens] 29 5.6 >gi|209571584 farnesyl diphosphate synthase isoform b [Homo sapiens] Length = 353 Score = 711 bits (1834), Expect = 0.0 Identities = 353/353 (100%), Positives = 353/353 (100%) Query: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR Sbjct: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60 Query: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ Sbjct: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120 Query: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ Sbjct: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180 Query: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ Sbjct: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240 Query: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR Sbjct: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300 Query: 301 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 353 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK Sbjct: 301 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 353 >gi|209571582 farnesyl diphosphate synthase isoform a [Homo sapiens] Length = 419 Score = 711 bits (1834), Expect = 0.0 Identities = 353/353 (100%), Positives = 353/353 (100%) Query: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR Sbjct: 67 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 126 Query: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ Sbjct: 127 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 186 Query: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ Sbjct: 187 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 246 Query: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ Sbjct: 247 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 306 Query: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR Sbjct: 307 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 366 Query: 301 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 353 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK Sbjct: 367 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 419 >gi|4503685 farnesyl diphosphate synthase isoform a [Homo sapiens] Length = 419 Score = 711 bits (1834), Expect = 0.0 Identities = 353/353 (100%), Positives = 353/353 (100%) Query: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR Sbjct: 67 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 126 Query: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ Sbjct: 127 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 186 Query: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ Sbjct: 187 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 246 Query: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ Sbjct: 247 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 306 Query: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR Sbjct: 307 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 366 Query: 301 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 353 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK Sbjct: 367 VKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 419 >gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Homo sapiens] Length = 300 Score = 44.7 bits (104), Expect = 1e-04 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 30/229 (13%) Query: 93 ELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPY 152 E+L L+ DDI D+S RRG + G+ IN AN + L K+ + P Sbjct: 54 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVY--FLGLEKVLTLDHP- 109 Query: 153 YLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAA 212 + ++LF + + GQ LD+ TE+ YK++V KT +A Sbjct: 110 --DAVKLFTRQLLELHQGQGLDIYWRDNYTCP----TEEEYKAMVLQKTGGL---FGLAV 160 Query: 213 AMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG-DPSVTGKIGTDIQDNKCSWLV 271 + D +++ K +L +G FFQI+DDY +L + S D+ + K S+ Sbjct: 161 GLMQLFSDYKED---LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217 Query: 272 VQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 320 + + + PE Q+ + + R + E +D+ + Y ED Sbjct: 218 IHAIW-SRPESTQV----------QNILRQRT--ENIDIKKYCVHYLED 253 >gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo sapiens] Length = 300 Score = 44.7 bits (104), Expect = 1e-04 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 30/229 (13%) Query: 93 ELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPY 152 E+L L+ DDI D+S RRG + G+ IN AN + L K+ + P Sbjct: 54 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVY--FLGLEKVLTLDHP- 109 Query: 153 YLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAA 212 + ++LF + + GQ LD+ TE+ YK++V KT +A Sbjct: 110 --DAVKLFTRQLLELHQGQGLDIYWRDNYTCP----TEEEYKAMVLQKTGGL---FGLAV 160 Query: 213 AMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG-DPSVTGKIGTDIQDNKCSWLV 271 + D +++ K +L +G FFQI+DDY +L + S D+ + K S+ Sbjct: 161 GLMQLFSDYKED---LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217 Query: 272 VQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 320 + + + PE Q+ + + R + E +D+ + Y ED Sbjct: 218 IHAIW-SRPESTQV----------QNILRQRT--ENIDIKKYCVHYLED 253 >gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Homo sapiens] Length = 246 Score = 42.7 bits (99), Expect = 5e-04 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 30/222 (13%) Query: 100 LVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIEL 159 L+ DDI D+S RRG + G+ IN AN + L K+ + P + ++L Sbjct: 7 LLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVY--FLGLEKVLTLDHP---DAVKL 60 Query: 160 FLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGI 219 F + + GQ LD+ TE+ YK++V KT +A + Sbjct: 61 FTRQLLELHQGQGLDIYWRDNYTCP----TEEEYKAMVLQKTGGL---FGLAVGLMQLFS 113 Query: 220 DGEKEHANAKKILLEMGEFFQIQDDYLDLFG-DPSVTGKIGTDIQDNKCSWLVVQCLQRA 278 D +++ K +L +G FFQI+DDY +L + S D+ + K S+ + + + Sbjct: 114 DYKED---LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIW-S 169 Query: 279 TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 320 PE Q+ + + R + E +D+ + Y ED Sbjct: 170 RPESTQV----------QNILRQRT--ENIDIKKYCVHYLED 199 >gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens] Length = 415 Score = 34.3 bits (77), Expect = 0.17 Identities = 55/222 (24%), Positives = 86/222 (38%), Gaps = 26/222 (11%) Query: 43 ARLKEVLEYNAIG-GKYNRGLTVVVAFR--ELVEPRKQDADSLQRAWTVGWCVELLQAFF 99 + LKE+ EY G GK R + V + R + + + QRA + E++ Sbjct: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRA--IALIAEMIHTAS 176 Query: 100 LVADDIMDSSLTRRGQ----ICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 155 LV DD++D + +RRG+ W +K V + +L A L ++ Sbjct: 177 LVHDDVIDDASSRRGKHTVNKIWGEKKAV----LAGDLILSAASIALARI------GNTT 226 Query: 156 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMY 215 +I + Q G+ L L + N + EK +K KTA S A+ Sbjct: 227 VISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFK-----KTA--SLIANSCKAVS 279 Query: 216 MAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK 257 + G H A + +G FQ+ DD LD GK Sbjct: 280 VLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGK 321 >gi|31377562 HAUS augmin-like complex, subunit 6 [Homo sapiens] Length = 955 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/38 (31%), Positives = 26/38 (68%) Query: 296 EKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYA 333 EK+ +V++L+ ++ +FL+ E + S +++L+ QYA Sbjct: 229 EKIQKVRSLWASVNETLMFLEKEREVVSSVLSLVNQYA 266 >gi|239756261 PREDICTED: similar to hect domain and RLD 2 [Homo sapiens] Length = 1102 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 281 EQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSH--------IMALIEQY 332 +Q Q+ ++NY Q+ + AR + ++ L+ E++ Y+H + L Q Sbjct: 353 QQVQLQRDNYAQQIKGERARWQQRMRKMSQEVYTLKTEKEHYTHRVEGLERSLSKLKNQM 412 Query: 333 AAPLPP 338 A PLPP Sbjct: 413 AEPLPP 418 >gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo sapiens] Length = 691 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 281 EQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSH--------IMALIEQY 332 +Q Q+ ++NY Q+ + AR + ++ L+ E++ Y+H + L Q Sbjct: 343 QQVQLQRDNYAQQIKGERARWQQRMRKMSQEVYTLKTEKEHYTHRVEGLERSLSKLKNQM 402 Query: 333 AAPLPP 338 A PLPP Sbjct: 403 AEPLPP 408 >gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo sapiens] Length = 1052 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 281 EQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSH--------IMALIEQY 332 +Q Q+ ++NY Q+ + AR + ++ L+ E++ Y+H + L Q Sbjct: 270 QQVQLQRDNYAQQIKGERARWQQRMRKMSQEVYTLKTEKEHYTHRVEGLERSLSKLKNQM 329 Query: 333 AAPLPP 338 A PLPP Sbjct: 330 AEPLPP 335 >gi|44681484 cell division cycle associated 2 [Homo sapiens] Length = 1023 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 251 DPSVTGKIGTDIQD------NKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKAL 304 + SV + T++Q N+ +C +RA P++ Q+LK +K K + K+L Sbjct: 518 EESVCNLLNTEVQPCKEKKINRRKSQETKCTKRALPKKSQVLKSCRKKKGKGKKSVQKSL 577 Query: 305 YEELDL 310 Y E D+ Sbjct: 578 YGERDI 583 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,685,409 Number of Sequences: 37866 Number of extensions: 528539 Number of successful extensions: 1117 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1110 Number of HSP's gapped (non-prelim): 12 length of query: 353 length of database: 18,247,518 effective HSP length: 103 effective length of query: 250 effective length of database: 14,347,320 effective search space: 3586830000 effective search space used: 3586830000 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.