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Search of human proteins with 208879470
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208879470 eukaryotic translation elongation factor 1 epsilon
1 isoform 2 [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208879470 eukaryotic translation elongation factor 1 epsilon ... 276 5e-75
gi|4758862 eukaryotic translation elongation factor 1 epsilon 1 ... 255 9e-69
gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens] 42 1e-04
gi|4503481 eukaryotic translation elongation factor 1 gamma [Hom... 34 0.034
gi|11125770 aminoacyl tRNA synthetase complex-interacting multif... 30 0.48
gi|14043022 methionyl-tRNA synthetase [Homo sapiens] 28 1.8
gi|47174859 tripartite motif-containing 46 [Homo sapiens] 28 1.8
gi|118722347 over-expressed breast tumor protein [Homo sapiens] 28 3.1
gi|11136628 eukaryotic translation elongation factor 1 beta 2 [H... 28 3.1
gi|4503477 eukaryotic translation elongation factor 1 beta 2 [Ho... 28 3.1
gi|83376130 eukaryotic translation elongation factor 1 beta 2 [H... 28 3.1
gi|4885409 high density lipoprotein binding protein [Homo sapiens] 27 4.1
gi|42716280 high density lipoprotein binding protein [Homo sapiens] 27 4.1
gi|169215618 PREDICTED: similar to Glutathione S-transferase the... 27 5.4
gi|148886661 exportin 4 [Homo sapiens] 27 5.4
gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens] 27 7.0
gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens] 27 7.0
gi|13540529 BCL2-like 14 isoform 2 [Homo sapiens] 27 7.0
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho... 27 7.0
gi|154707916 glutathione S-transferase, C-terminal domain contai... 27 7.0
gi|149588660 glutathione S-transferase, C-terminal domain contai... 27 7.0
gi|224589077 hypothetical protein LOC285600 isoform 1 [Homo sapi... 26 9.1
>gi|208879470 eukaryotic translation elongation factor 1 epsilon 1
isoform 2 [Homo sapiens]
Length = 139
Score = 276 bits (705), Expect = 5e-75
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MAAAAELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYL 60
MAAAAELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYL
Sbjct: 1 MAAAAELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYL 60
Query: 61 LGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILL 120
LGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILL
Sbjct: 61 LGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILL 120
Query: 121 YYGLHRFIIRKLRHTEVGN 139
YYGLHRFIIRKLRHTEVGN
Sbjct: 121 YYGLHRFIIRKLRHTEVGN 139
>gi|4758862 eukaryotic translation elongation factor 1 epsilon 1
isoform 1 [Homo sapiens]
Length = 174
Score = 255 bits (651), Expect = 9e-69
Identities = 128/129 (99%), Positives = 129/129 (100%)
Query: 1 MAAAAELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYL 60
MAAAAELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYL
Sbjct: 1 MAAAAELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYL 60
Query: 61 LGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILL 120
LGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILL
Sbjct: 61 LGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILL 120
Query: 121 YYGLHRFII 129
YYGLHRFI+
Sbjct: 121 YYGLHRFIV 129
>gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
Length = 1512
Score = 42.4 bits (98), Expect = 1e-04
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 32 VLQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDGHSSKNDI 91
+L + T + +I +L + A L GS E + WLE+ T++ SS +
Sbjct: 39 ILHVSENVIFTDVNSILRYLARVATTAGLYGSNLMEHTEIDHWLEFSATKL---SSCDSF 95
Query: 92 HTLLKDLNSYLEDKVYLTGYNFTLADILLY 121
+ + +LN L + YL G + +LAD+ ++
Sbjct: 96 TSTINELNHCLSLRTYLVGNSLSLADLCVW 125
>gi|4503481 eukaryotic translation elongation factor 1 gamma [Homo
sapiens]
Length = 437
Score = 34.3 bits (77), Expect = 0.034
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 24/110 (21%)
Query: 29 QIPVLQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDGHSS- 87
++P + ++G + IA ++ + E L GST E A V QW+ + + + +S
Sbjct: 57 KVPAFEGDDGFCVFESNAIAYYV----SNEELRGSTPEAAAQVVQWVSFADSDIVPPAST 112
Query: 88 -------------------KNDIHTLLKDLNSYLEDKVYLTGYNFTLADI 118
K ++ +L L++YL+ + +L G TLADI
Sbjct: 113 WVFPTLGIMHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADI 162
>gi|11125770 aminoacyl tRNA synthetase complex-interacting
multifunctional protein 2 [Homo sapiens]
Length = 320
Score = 30.4 bits (67), Expect = 0.48
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 65 AEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILLY 121
A ++ W++ + Q+ SSK + + +NS L +L G T+AD++L+
Sbjct: 227 AVNATLIDSWVDIAIFQLKEGSSKEKA-AVFRSMNSALGKSPWLAGNELTVADVVLW 282
>gi|14043022 methionyl-tRNA synthetase [Homo sapiens]
Length = 900
Score = 28.5 bits (62), Expect = 1.8
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 26/115 (22%)
Query: 29 QIPVLQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVD----- 83
++PVLQ ++G L + I + + L S E+ + QWLE+ T++
Sbjct: 47 KVPVLQLDSGNYLFSTSAICRY--------FFLLSGWEQDDLTNQWLEWEATELQPALSA 98
Query: 84 -----------GHSSKNDIHTLLKDLNSYL--EDKVYLTGYNFTLADILLYYGLH 125
G + L ++ L ++ +L G +LADI+L+ L+
Sbjct: 99 ALYYLVVQGKKGEDVLGSVRRALTHIDHSLSRQNCPFLAGETESLADIVLWGALY 153
>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
Length = 759
Score = 28.5 bits (62), Expect = 1.8
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 32 VLQTNNGPSLTGLTTIAAHLVKQANKE--YLLGSTAEEKAIVQQWLE-YRVTQVDGHSSK 88
V +T++G +T + + L + K Y+LG+ + + + E R T+V G +K
Sbjct: 251 VRRTHSGHKITPVLSAYQALKDKLTKSLTYILGNQDTVQTQICELEEAVRHTEVSGQQAK 310
Query: 89 NDIHTLLKDLNSYLEDK 105
++ L++ L + LE+K
Sbjct: 311 EEVSQLVRGLGAVLEEK 327
>gi|118722347 over-expressed breast tumor protein [Homo sapiens]
Length = 384
Score = 27.7 bits (60), Expect = 3.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 33 LQTNNGPSLTGLTTIAAHLVKQ-ANKEYLLGSTAEEKAIVQQWLEYRVTQVDG 84
L TN P+ TGL T+ L Q ++ Y L EE+A +Q + R + G
Sbjct: 56 LDTNQAPNWTGLQTLLQQLPPQDIDERYCLALGEEERAELQLFCARRKQEALG 108
>gi|11136628 eukaryotic translation elongation factor 1 beta 2 [Homo
sapiens]
Length = 225
Score = 27.7 bits (60), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 95 LKDLNSYLEDKVYLTGYNFTLADILLY 121
L+ LN YL DK Y+ GY + AD+ ++
Sbjct: 12 LQVLNDYLADKSYIEGYVPSQADVAVF 38
>gi|4503477 eukaryotic translation elongation factor 1 beta 2 [Homo
sapiens]
Length = 225
Score = 27.7 bits (60), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 95 LKDLNSYLEDKVYLTGYNFTLADILLY 121
L+ LN YL DK Y+ GY + AD+ ++
Sbjct: 12 LQVLNDYLADKSYIEGYVPSQADVAVF 38
>gi|83376130 eukaryotic translation elongation factor 1 beta 2 [Homo
sapiens]
Length = 225
Score = 27.7 bits (60), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 95 LKDLNSYLEDKVYLTGYNFTLADILLY 121
L+ LN YL DK Y+ GY + AD+ ++
Sbjct: 12 LQVLNDYLADKSYIEGYVPSQADVAVF 38
>gi|4885409 high density lipoprotein binding protein [Homo sapiens]
Length = 1268
Score = 27.3 bits (59), Expect = 4.1
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 45 TTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLL-----KDLN 99
TTIA VK++ +Y++G +Q+ LE V+ S + T++ + L
Sbjct: 296 TTIAVE-VKKSQHKYVIGPKGNS---LQEILERTGVSVEIPPSDSISETVILRGEPEKLG 351
Query: 100 SYLEDKVYLTGYNFTLADILLYYGLHRFIIRK 131
L + VY +FT++ + LHRFII K
Sbjct: 352 QALTE-VYAKANSFTVSSVAAPSWLHRFIIGK 382
>gi|42716280 high density lipoprotein binding protein [Homo sapiens]
Length = 1268
Score = 27.3 bits (59), Expect = 4.1
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 45 TTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLL-----KDLN 99
TTIA VK++ +Y++G +Q+ LE V+ S + T++ + L
Sbjct: 296 TTIAVE-VKKSQHKYVIGPKGNS---LQEILERTGVSVEIPPSDSISETVILRGEPEKLG 351
Query: 100 SYLEDKVYLTGYNFTLADILLYYGLHRFIIRK 131
L + VY +FT++ + LHRFII K
Sbjct: 352 QALTE-VYAKANSFTVSSVAAPSWLHRFIIGK 382
>gi|169215618 PREDICTED: similar to Glutathione S-transferase
theta-4 [Homo sapiens]
Length = 176
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 74 WLEYRVTQVDGH--SSKNDIHTLLKDLNS-------YLEDKVYLTGYNFTLADIL 119
WL+ + ++ G S++ H + + NS +L+DK+++TG +LAD++
Sbjct: 50 WLKLLIPKITGEEVSAEKMEHAVEEVKNSLQLFEEKFLQDKMFITGNQISLADLV 104
>gi|148886661 exportin 4 [Homo sapiens]
Length = 1151
Score = 26.9 bits (58), Expect = 5.4
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 59 YLLG--STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLA 116
YLL + E I + +EY + HSS+ DI+T L+ L S E + GYN T +
Sbjct: 548 YLLADDTQGETPLIPPEIMEYSIK----HSSEVDINTTLQILGSPGEKASSIPGYNRTDS 603
Query: 117 DILLYYGLHR 126
I L + R
Sbjct: 604 VIRLLSAILR 613
>gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 26.6 bits (57), Expect = 7.0
Identities = 21/84 (25%), Positives = 34/84 (40%)
Query: 5 AELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYLLGST 64
A ++EK S K SAQG+R + +++ L+ + L +A ++
Sbjct: 95 AFFGVVEKEDSQSTPAKVSAQGQRTLEYQDSHSQQWSRCLSNVEQCLEHEAVDPKVISIA 154
Query: 65 AEEKAIVQQWLEYRVTQVDGHSSK 88
IV W + TQ G SK
Sbjct: 155 NRVAEIVYSWPPPQATQAGGFKSK 178
>gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 26.6 bits (57), Expect = 7.0
Identities = 21/84 (25%), Positives = 34/84 (40%)
Query: 5 AELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYLLGST 64
A ++EK S K SAQG+R + +++ L+ + L +A ++
Sbjct: 95 AFFGVVEKEDSQSTPAKVSAQGQRTLEYQDSHSQQWSRCLSNVEQCLEHEAVDPKVISIA 154
Query: 65 AEEKAIVQQWLEYRVTQVDGHSSK 88
IV W + TQ G SK
Sbjct: 155 NRVAEIVYSWPPPQATQAGGFKSK 178
>gi|13540529 BCL2-like 14 isoform 2 [Homo sapiens]
Length = 252
Score = 26.6 bits (57), Expect = 7.0
Identities = 21/84 (25%), Positives = 34/84 (40%)
Query: 5 AELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLTGLTTIAAHLVKQANKEYLLGST 64
A ++EK S K SAQG+R + +++ L+ + L +A ++
Sbjct: 95 AFFGVVEKEDSQSTPAKVSAQGQRTLEYQDSHSQQWSRCLSNVEQCLEHEAVDPKVISIA 154
Query: 65 AEEKAIVQQWLEYRVTQVDGHSSK 88
IV W + TQ G SK
Sbjct: 155 NRVAEIVYSWPPPQATQAGGFKSK 178
>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
sapiens]
Length = 864
Score = 26.6 bits (57), Expect = 7.0
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 33 LQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDGHSSKNDIH 92
L++ N L T HL+ A Y L + +EKAI T++D D+
Sbjct: 746 LESFNEDFLKRNATSLQHLLSGAKMMYFLDKSRQEKAIA------IATRLDETIKDKDVK 799
Query: 93 TLLKDLNSYLE 103
TL+K + L+
Sbjct: 800 TLIKVSEALLD 810
>gi|154707916 glutathione S-transferase, C-terminal domain
containing isoform 2 [Homo sapiens]
Length = 546
Score = 26.6 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 104 DKVYLTGYNFTLADILLYYGLHRFII 129
+ V+ G FTLADI+L +H F++
Sbjct: 187 EHVFAEGLYFTLADIVLLPCIHHFLV 212
>gi|149588660 glutathione S-transferase, C-terminal domain
containing isoform 1 [Homo sapiens]
Length = 633
Score = 26.6 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 104 DKVYLTGYNFTLADILLYYGLHRFII 129
+ V+ G FTLADI+L +H F++
Sbjct: 274 EHVFAEGLYFTLADIVLLPCIHHFLV 299
>gi|224589077 hypothetical protein LOC285600 isoform 1 [Homo sapiens]
Length = 1275
Score = 26.2 bits (56), Expect = 9.1
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 10 LEKSLGLSKGNKYSAQGERQIP--VLQTNNGPSLTGLTTIAAHLVKQANKEYLLG----- 62
+EKS L +G+ E++I VL + P H++ Q N+EYL
Sbjct: 1104 IEKSTALQEGDVALELTEQKINTMVLDLCHKPGGREYLRQIYHIM-QLNEEYLKEQLFSM 1162
Query: 63 STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTLLKDLNSYLEDKVYLTGYNFTLADILLYY 122
+++EEK + + L+ + ++ S + + K + + D+V +T +N+ A +L Y
Sbjct: 1163 NSSEEKPLPIRPLKTTLRSIEDQPSAFNPFHVYKAFSENMLDQVSITKWNWNWAKLLPNY 1222
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,722,448
Number of Sequences: 37866
Number of extensions: 180402
Number of successful extensions: 411
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 22
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.