Guide to the Human Genome
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Name: GADL1 Sequence: fasta or formatted (521aa) NCBI GI: 197383062
Description:

glutamate decarboxylase-like 1

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         36           2
 C cysteine            2.7         14           2
 D aspartate           6.3         33           1
 E glutamate           7.9         41           2
 F phenylalanine       4.2         22           2
 G glycine             6.3         33           2
 H histidine           2.1         11           1
 I isoleucine          4.2         22           1
 K lysine              7.9         41           2
 L leucine            10.6         55           2
 M methionine          4.0         21           2
 N asparagine          2.9         15           1
 P proline             4.8         25           2
 Q glutamine           2.9         15           2
 R arginine            5.0         26           2
 S serine              6.3         33           2
 T threonine           2.9         15           2
 V valine              6.7         35           2
 W tryptophan          1.9         10           1
 Y tyrosine            3.5         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate decarboxylase-like 1 
CSAD                  0.584   cysteine sulfinic acid decarboxylase 
GAD1                  0.469   glutamate decarboxylase 1 isoform GAD67 
GAD2                  0.465   glutamate decarboxylase 2 
GAD2                  0.465   glutamate decarboxylase 2 
DDC                   0.103   dopa decarboxylase (aromatic L-amino acid decarboxy...
DDC                   0.103   dopa decarboxylase (aromatic L-amino acid decarboxyla...
HDC                   0.101   histidine decarboxylase 
GAD1                  0.037   glutamate decarboxylase 1 isoform GAD25 
PDXDC1                0.033   pyridoxal-dependent decarboxylase domain containing...
SGPL1                 0.016   sphingosine-1-phosphate lyase 1 
AGXT                  0.009   alanine-glyoxylate aminotransferase 
AGGF1                 0.007   angiogenic factor VG5Q 
HSPA8                 0.006   heat shock 70kDa protein 8 isoform 2 
HSPA8                 0.006   heat shock 70kDa protein 8 isoform 1 
HSPA2                 0.005   heat shock 70kDa protein 2 
ZNF460                0.005   zinc finger protein 460 
SCN1A                 0.004   sodium channel, voltage-gated, type I, alpha 
CAMKK1                0.004   calcium/calmodulin-dependent protein kinase 1 alpha ...
CAMKK1                0.004   calcium/calmodulin-dependent protein kinase 1 alpha ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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